Array 1 113712-120581 **** Predicted by CRISPRDetect 2.4 *** >NZ_VMHJ01000004.1 Bifidobacterium polysaccharolyticum strain W8111 NODE_4_length_288345_cov_294.905745, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 113712 32 100.0 34 ................................ AATTTGAACTTGACCGGATAACTGGCGGGTTGGG 113778 32 100.0 33 ................................ TCCGCATAGATCCTCCATCCGGACTCCCTGGTC 113843 32 100.0 34 ................................ AATTATGACCTGTGGGGTTTCCACAGAACTCTTT 113909 32 100.0 34 ................................ TCGGCCACAAACTGCCAGTATCCGGCGGTGTTTT 113975 32 100.0 34 ................................ CAGAAAATATCCTCACCGTAGGTACCAAATCCTT 114041 32 100.0 34 ................................ ACTGTAATAATCCTCTTTATCGAGGATGGTTAAT 114107 32 100.0 35 ................................ CTCGCGGGATTGTCAAAAACACATGTTGAGCGGTT 114174 32 100.0 35 ................................ TTCGATTCCGATTCAGCCATGGCCGCATTCATGAG 114241 32 100.0 34 ................................ CGAACCATGGCGTTTCAAAGCGCACAGGGGTACG 114307 32 100.0 34 ................................ CGATAGGTTCTCACCACTGGGGGTCGGCCTTGTC 114373 32 100.0 34 ................................ CTGCTCCGGTATCGAAGTGGCCGAGCAAAAGCGC 114439 32 100.0 34 ................................ CACTAGTCCGGCTGCTATCTGAGTCTGTGGCGCT 114505 32 100.0 35 ................................ CGTTGGATACGGCACCACTTATGCCATCCCATATA 114572 32 100.0 34 ................................ ATCGTGATGTCGTCGCGGTCGGTGACTTTTGCCC 114638 32 100.0 35 ................................ TAGCTCGGATCGGGCGTGCTCATTGAGGGTCTCTT 114705 32 100.0 34 ................................ GACGATTTTGCAAACTATCTCTGGGCGCACCCGA 114771 32 100.0 34 ................................ TGCCCGGGCTCGGCATAAAACCACTGCCGATTAG 114837 32 100.0 33 ................................ ATCGCCAGGAACGCCGCCCGCATCCCTATGAAG 114902 32 100.0 35 ................................ TGTCATCTCTCGCGGGTCGGGTACAGTGGTGCAAG 114969 32 100.0 33 ................................ CGCTCAGTAGTCGATGATTCTGCCGAGACCCAA 115034 32 100.0 34 ................................ AGCAGTTTAACGACGCCGTTGTCAATTTGGATAA 115100 32 100.0 35 ................................ ATCGCTCGCAGCTCACGCTGCGCGTACGCGAGATC 115167 32 100.0 36 ................................ ACGCCGGAGGAAGCGGAGTACGCCGTGCAGCATCTT 115235 32 100.0 34 ................................ TCCGTGGAGATCTGCATGTAGATCATGGGCTTGG 115301 32 100.0 34 ................................ CGCAACGTGTGCGACGGCTACAACACGCTGTTTT 115367 32 100.0 34 ................................ ATACGTGGGCAAGCAGGAGCGGGGCATCTTGATC 115433 32 100.0 35 ................................ GGTGGTCTGGCAAGAGGACGCGCCAAAATGCACTT 115500 32 100.0 34 ................................ ATCGGCAAAGGTATTAACATAGTCCTTGCCATCG 115566 32 100.0 36 ................................ AGCAAGATCAAAGATCATGCGACGGTGGGTTGGAAC 115634 32 100.0 34 ................................ CAAATGGCCGCCAAGGCGGTCAAACTCTACCAGA 115700 32 100.0 35 ................................ TGATACTCTCTGGCGCATAGTATGAGCGTCGGATA 115767 32 100.0 34 ................................ GACTGCCCGGAGGTCGAGATGGCCCCCGAATGGG 115833 32 100.0 35 ................................ CCCTTGACTCATTACATTTTAGGTGCATCAATCGG 115900 32 100.0 34 ................................ ACAGATTGGACTGATTGGCAGGTCTATGATTCTT 115966 32 100.0 36 ................................ CCTATGATCCATCCAAATTGACCATAGAAACATAAG 116034 32 100.0 33 ................................ TTTGCGATTCAGCCGTATAACACATGCAAAGTG 116099 32 100.0 35 ................................ TGGATGCCTTGCAGATAGTGGGCGAGCGCGCAATA 116166 32 100.0 35 ................................ ACATTGCCCACCACACCGACAACCATGCACTGCAC 116233 32 100.0 35 ................................ GATTGTCTGCCATACGCTGGTGATGACTGTGATGA 116300 32 100.0 35 ................................ ATCGCGTTATACAAATCCATCTGGTTGGCTTTGTC 116367 32 100.0 35 ................................ TTGATACTGCCCCAGACCCCTGAGAAGAAATCACC 116434 32 100.0 35 ................................ ATCCTTGAACAGCCTGACAAGTTCGTCCATCGAAT 116501 32 100.0 34 ................................ TTGCTGTATCTGCTGTGCTGGCTGACTCATGACG 116567 32 100.0 35 ................................ AATGGGTTGGAATGCTGGAAGGGCATGTGGCGGCA 116634 32 100.0 35 ................................ GTGTCGAACTTGACGATCCGCAGCCTGGGGGTCAT 116701 32 100.0 34 ................................ GATCAAGCACTCAAATACTTAAAGGATCATCGCG 116767 32 100.0 35 ................................ TTGCCAACGTGGCCGATTCCACGGCGTTCGTACGT 116834 32 100.0 34 ................................ AGTTCCATAGCACGTGACCCCGGTATTCAAGTGG 116900 32 100.0 34 ................................ TTGAGCGGGTTGAAGTCCGGCGGGGTGTTGAACA 116966 32 100.0 34 ................................ ACCGCCATCATCCAACTCCTTACTTGTGGGGCGA 117032 32 100.0 34 ................................ CGCGTGCTGGCCCCTGGCGGCGTGCTGATCTTCA 117098 32 100.0 34 ................................ CGGTTGTATACATGGTCGTCGGCGTGTGAAGCGT 117164 32 100.0 33 ................................ CAAGGGCCATAAGCCCTCCATGCCGTCCGGCTT 117229 32 100.0 33 ................................ AGCATGTCGTAAATCTCGATACCGAAATCAATC 117294 32 100.0 37 ................................ CGATGGATCCCATGGTATCAACTGGATCTTTAGGCAC 117363 32 100.0 34 ................................ CCGTTGAATCTGCTCCACGTTATCCAGCTGCCCG 117429 32 100.0 34 ................................ TATCACTAATCTGGGAATTGTCAAACGCCATTAG 117495 32 100.0 36 ................................ CTCCCGTCCCTCCGCATACACGCTCATGCGGAGGGT 117563 32 100.0 35 ................................ CGATACCATGGTGAACACCACGCCAAGCGTGGATG 117630 32 100.0 33 ................................ TTGGCCGTGGCCTTAGTGGTCTCGGTCCGTGGT 117695 32 100.0 35 ................................ TGCTGTCAACTCGCCGTCCGGATCATCGTTGGCAT 117762 32 100.0 34 ................................ CAGCATGATTGTGGCGGATTCGAGGTCGTCGCCG 117828 32 100.0 35 ................................ GTTTTGACCAACATTGGCAAAAAACCCGCCTTCGA 117895 32 100.0 34 ................................ CAGTGCAGGAGCCACCCGGCATGCCTGACCAGGC 117961 32 100.0 35 ................................ ATTGTTTGATCTTCAATGCGACTCTGAACACTGGC 118028 32 100.0 33 ................................ GTTCAGATGGATGGAATCAGTGTCCGAATACAT 118093 32 100.0 35 ................................ TGGTTTGAATTGTAGCCGACCGTGGCGTCCAACGT 118160 32 100.0 35 ................................ AAACGCGTCCTCCGCAGGACGGGCACGGAGCGCGT 118227 32 100.0 35 ................................ GTTGCCTGAGTCAATATCCGGCGATTTATATACTG 118294 32 96.9 35 .....................T.......... ATAAGCTGGTAGATGCTTTGAGGCATGGACATTAT 118361 32 96.9 34 .....................T.......... CGACGCGGGAAGCTATAGCAAATGAAAGAGCGGA 118427 32 96.9 34 .....................T.......... ACAGCCGGTCATGAAACACTGGCCCTTTGCTGTG 118493 32 96.9 34 .....................T.......... GCATAGGCTTTCCATGGATCGTCATAGCCGACAC 118559 32 96.9 34 .....................T.......... CGAACCGTCACGGTTGTATTTGATGGTCAGGGTC 118625 32 96.9 34 .....................T.......... TCAGAAAAGGCAGGCAGGAGAGCGGCACCTATTA 118691 32 96.9 34 .....................T.......... CTACAACCACAGGAACGGCAAATGGCGGCAAATG 118757 32 96.9 37 .....................T.......... ATCACCTCGTATATTCCCATCAGCGGGGATCCTGCCG 118826 32 96.9 34 .....................T.......... GGGTCCAGCGAGTACATCCCCTCGAGCTGGACCA 118892 32 96.9 35 .....................T.......... CATTATACAAGGCAGCCGTCACCGATAGTGTACGC 118959 32 96.9 34 .....................T.......... ATGGGGGTGAAATTGACGTCCAAAGTGGTCGGGT 119025 32 96.9 35 .....................T.......... GGCGCAGGGCCCAGTTTTGGGGGCGGCCCAAGCTT 119092 32 96.9 34 .....................T.......... CTGTGCCTGTGTGGCCGATGTCGCCATGAAAATC 119158 32 96.9 33 .....................T.......... CACATCAAGCCGGGTAAATTCCCTTTTATACAG 119223 32 96.9 34 .....................T.......... ATCCACAATCCGTACTTCTCATACTATGGCGTAA 119289 32 96.9 34 .....................T.......... TGGAATGTCATCCACGGGATCCTGGACAAGGTCT 119355 32 96.9 34 .....................T.......... GGCAACGTCGACAGCCTGGGCGAAGTGGTCATGC 119421 32 96.9 36 .....................T.......... CTTCGCGTAGTTTTGCTCCGAGAGCCCTTGCTTTTA 119489 32 96.9 34 .....................T.......... CCGTTTATCCAGTCAGGCAAGCACATATGGACGG 119555 32 96.9 35 .....................T.......... TAATAGGCGTTTTGGTCGTAAGTATTGGTTTTTGT 119622 32 93.8 35 .............A.......T.......... ATACAATCCGGTAAACACATCTGGACTGCTGAAAC 119689 32 93.8 34 ...........T.........T.......... CAGAACGACGGCACAAGACGATTCGTCATGTGGA 119755 32 96.9 35 .....................T.......... ATAGGACGTGTCAGGGTCGCCTCTACGCGTCGGAG 119822 32 96.9 33 .....................T.......... ACTTGGCAGAACTATGACCTTCGCGACGCTGAT 119887 32 96.9 34 .....................T.......... GGGGAAGACCGTAAATCTGCTCGAAAAGATGGTC 119953 32 96.9 35 .....................T.......... ACGCGAAACCCTTTAACCCCGGAAGATGTCATAAC 120020 32 96.9 34 .....................T.......... CGGCAAGGAGTTCATGCACGATCCAGCCACAGGG 120086 32 90.6 33 ...............T.....T.A........ TCGTTCGGGTCCAGCGTGTAGCTCCCCTGGAGC 120151 32 96.9 35 .....................T.......... ACCTGGTGTTGCGCCTGGTAGGCCCGATACATCTT 120218 32 93.8 34 .....................T.....A.... ATCAGATTCCATTTGGATCACCACCATATGCGTA 120284 32 96.9 34 .....................T.......... GCCAGCTTGCTGTCTACGATCATTGCCGCACCTG 120350 32 93.8 34 .............T.......T.......... GATTATGCTCAATCACAAGACGACGATATGGCAC 120416 32 96.9 34 .....................T.......... ATCAATGCAAAGGCAAAGATTTCACCATCTATGG 120482 32 87.5 34 .....GT............T.T.......... GCCCAGTCTTGCGCCCGCCAAGGCAATGAGAACG A [120497] 120549 32 75.0 0 .A..T..T....GT.....T.T......G... | G [120576] ========== ====== ====== ====== ================================ ===================================== ================== 104 32 98.5 34 GTCGCTCCCTTCACGGGAGCGCGGATTGAAAT # Left flank : CCATTACTACGGGGTGAGGCGTCATATCCCTGTTGACCAAGTGATGATGCTATAGAGTTATGTGTCTTTGTTGTACTGTTTTGTTTTAGCCACGGAAATTAGACGATAGCTAAGTGGCTGGTGTAATTCTGTAAACGGTGCAGTATGTTGACTACTGTTGTGGATCATCGTTGGCGCGAAACGCTAGCAATCATGTATTCACCTGATCCTTCGCGCCGCAAATCTTTACTTCAGGACGATATACGGTCTTAATCTCGCATTTTTTTTTTGAGCTGAGTTCTTTTCACATTTCAAATCAGAGGCTATTTATACGAAGGAAGCTAGAATTTTAGTGAATCGAATGAACAGTTGTTTGATAACTGAATAGTGATGTTATCAACTTGAAGTATCATCTCAATTGCTCGACTATGAACAGGAGCTGGGTACCTAGTTTGGGCTGTTGGGAGTCGTCAGCCATTAAAAGCTGATCATATATTGGTCATCGGATGTATCATTGTGCT # Right flank : TACCGCTACGAACGGCTCTCTGCTTGCGGCAAATGCATTGCCTCCTACGTGGATTACCTCCTATGTGGAAGCCTAAAAACGGAAAACTAATCGCTCTACTTTGAATTAACCAGACAGCACTGCCTCTTAGCTGGAATATGTATTAAATCAGTTCTTCCCTCAGAACTCTTTTATAAATTCTGCTCCTCAAAAACATAAGTATGAGTTGCTGCTTTGGTATAGTACCGATCATTTTCATGCCATTCTCTCATTCCTAGGCGCGGGTGTGCCGCCCGGTATAAGCTTGTATGCGGTGTGTCCACGAGTAGCGGACTTGGAGGTGTGGTCGCCGATGGAGCAATTCGACGATGCAGGTGGCGCGGAATCTGGCAGAAGCGCTTCAGCCGGTTCTGCATCTGTGCCATCGCACCTGGATGACGCGACTGCTGTGAACAAGGTTTCGGCCCACCCTGAAGCGACTATTCCGGATTCGGAATATTCTCTGGCTGAGATTGAGCAGC # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTTCACGGGAGCGCGGATTGAAAT # Alternate repeat : GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-28] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //