Array 1 422688-424997 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBTG02000002.1 Pasteurella multocida strain FDAARGOS_220 unitig_0_quiver_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 422688 28 100.0 32 ............................ ATACTGTACAGACACGCCGTCAAACTGGCGAT 422748 28 100.0 32 ............................ ACCGGCTCTCGATTCTTCAGCAAGAACACTAT 422808 28 100.0 32 ............................ CAAGTTTTCTGAATACGTCACGATGTCAGCAC 422868 28 100.0 32 ............................ TTTGCCGTGCCGGTGATTTGATTTGTTTAGAT 422928 28 100.0 32 ............................ GGGCGATGTTATTCGCGTAGCAGACTGTGATT 422988 28 100.0 32 ............................ AAAATCCTGTTCTATTGCTAGCCAATCAATGT 423048 28 100.0 32 ............................ ACTCGCCCAACGCATAGCATAATAAGCAGTAG 423108 28 100.0 32 ............................ TGCAAAGAATGAAGAAGTACCATAAAAAGACA 423168 28 100.0 32 ............................ ATTGAGGCAGAGTTGGAATATACTCACTATCA 423228 28 100.0 32 ............................ GCCCAGCTTAAAAACTGGGCTTTTTTAACTCT 423288 28 100.0 33 ............................ AGGAATAACATGGGTGATTTCCCCTAAATTCTC 423349 28 100.0 32 ............................ TTGTTTCGCATGGGACTTTCTCTTTAGTGAAT 423409 28 100.0 32 ............................ TGTAAATAAACCCAATAAAGATGATTCTTTTG 423469 28 100.0 32 ............................ TTTAATTCTCATTGTTGACTTTGCAACACCTT 423529 28 100.0 33 ............................ AGAGCTTTCTAAAATTCAACTTGTGACAACTTC 423590 28 100.0 32 ............................ ATAGCCATTAATCTTTGTTGAGTGGTGTGATA 423650 28 100.0 32 ............................ TCAATATTTGTCACAATACGACGACCACGCTT 423710 28 100.0 32 ............................ TTTTGAAATGAGCGGTAAAGATCTAGCTGGAC 423770 28 100.0 32 ............................ ATATCAAACACCCCACTAGTTAATAAAAGGCA 423830 28 100.0 32 ............................ GGTAAAAATATCTCGAGCAAAATAGAAATAAT 423890 28 100.0 32 ............................ ATATAAACAGGTTAAAGGGAAAAGCCCTTAAG 423950 28 100.0 32 ............................ TTTACGGCCACCTTCCATAGCCCACTCACGTG 424010 28 100.0 32 ............................ TTAATTTTCAAATCTGTTAAGTAATAAAAAAC 424070 28 100.0 32 ............................ TTAAATTGAGATTGATATTACTCTTAAATTTT 424130 28 100.0 32 ............................ ACGGGTAATTGTTATAACAAAAGGTTTTGACA 424190 28 100.0 32 ............................ TTCTGATGCATTGATTAAAGTTCAACAGAAAA 424250 28 100.0 32 ............................ GTTTGGAAAACGAAGAGGTCAATATCTTGCAT 424310 28 100.0 32 ............................ TTATTCTTTTATTAATGGGCGAGGAAGCGGTT 424370 28 100.0 32 ............................ GAAGTATGCCGTAGAATTGCAGTTGTTGGACG 424430 28 100.0 32 ............................ TGTACAAACCTTGGTGTTGGATTTGTTACCAC 424490 28 100.0 32 ............................ CCACTTTCTACGCCCGCTATTTTTTTTATAAA 424550 28 100.0 32 ............................ TTACCAAGACTCGGGTCAAGTGCGCCGAAATA 424610 28 100.0 32 ............................ ACTTCGTTTTCGAATTTATCAAACATGGCCGC 424670 28 100.0 32 ............................ GACCGAGTTTACCAGCAAGGCGACGTGGTCAA 424730 28 100.0 32 ............................ AATTCAACGCGGTGATCAAGAGATTAAAGAAA 424790 28 100.0 32 ............................ ATATTTCTAATTCAGTATCAACTAATGCGTTT 424850 28 100.0 32 ............................ CAAGACGTTTAATATCAGCTTTACTGTGACTG 424910 28 100.0 32 ............................ CACTTCACACGCGACAAATTGAACAATTATTA 424970 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================= ================== 39 28 99.9 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGCCTACCGAGCACCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAACGCAACCGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAAAGTTTCCGAACAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : AACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTCAAGACCGGTGTATCCAATGCCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAGACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCTAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1434251-1435541 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBTG02000002.1 Pasteurella multocida strain FDAARGOS_220 unitig_0_quiver_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1434251 36 100.0 30 .................................... TAAACGCGGTTCGCGATCATTTGCTGATTT 1434317 36 100.0 30 .................................... TGACTTAACAGCATTTCTCCATGAGTTGAC 1434383 36 100.0 30 .................................... TACCAACCTTAACTGTATCAATCCATTTAT 1434449 36 100.0 30 .................................... CCTAAAGCTTTACCATATATTAAACAAATG 1434515 36 100.0 30 .................................... TTTAGAACTGCGATCTTGATAAAGCCATTT 1434581 36 100.0 30 .................................... TTGATGATTGGCATTTCGACGCGCATTTCC 1434647 36 100.0 30 .................................... AAAATGGGGCGTTATAACAACTCGGTTGTT 1434713 36 100.0 30 .................................... GTGTAGTGGTCATTTGTCAAGGTGAAAAGC 1434779 36 100.0 30 .................................... TTAATAAAGTAATTATGTGCCGTTAATCCA 1434845 36 100.0 30 .................................... CTTATCCTATGCGTCTTCTCAGCTTTCCAC 1434911 36 100.0 30 .................................... TTATCCATGACGGAAGGGGCTACTTCTGTA 1434977 36 100.0 30 .................................... ATCACACCGACGCAGATGGTGTGGCAACAG 1435043 36 100.0 30 .................................... TTATTTGTCTAGCATAAACGTTGTTAGTTC 1435109 36 100.0 30 .................................... AAAATTCTGATAAATAAGTAACGTCGCGAT 1435175 36 100.0 30 .................................... GAGCGAAAGTTGGATCGACAAAAACACGAC 1435241 36 100.0 31 .................................... ATAATTAAATTGCAATATATATTACAATTTA 1435308 36 100.0 30 .................................... TTAAGTGAATTTGTTAAGAAATATAGAGTA 1435374 36 100.0 30 .................................... TAATCTGGGGTAAAAACTATCCACGTCTAT 1435440 36 100.0 30 .................................... CTCGCAATCGAGCGTTATCAAGTTATCAAT 1435506 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 20 36 100.0 30 GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT # Left flank : TAGATAAAAATAATCCAAGTAATGAAGAAGTTAGATATGGCTATGTGAAAAAAGAGGGATTTAATAAAGCAATACATGACAGCTTCAAAGATGTATCAACCAATATAGAAAAACAAAATAATAGAATCTATGATGATAAGAAATAGGAGAATTTTATATGTTAAAGAAATTAATCCTTTTCATGAAAAAATTGAGCTTGTTCTTAGATAAATTAAATGAAGAACAAAAGAAATTGAACCAAAAAGAAAAACCTCAATTTATCCGTACGAATATAAATGGATTGCCATTAAATAGACATGGCGTTGATATGGAGGGAAATATCTATGGTACAACAAGTAGTGAGGAAGAATAAAAAATTATCAACATACTGAACCCAAAAAACATGAAAATTAGAGAATAAATGATTTGATAGATAGGTTAGAAAATGAGCTTTAACGCAAAAAATATGACACAGGGCGGTCAAGTTATTAAATACATGATCGGTATGTTCATGCAGATTA # Right flank : TTGTTTCTGCCCTTATCCCTTATAACACAAGGGATAAGGGCATTTTTAATACTCAAAAATTACTTAAATTTACGATATTTAGTAGTCTATTTTTAGAAATTTTTTCTTAAAAAAACAATTGATTTTGTCTAATAGAGATAGCATCTGTTGTATGTTCCCCCTGTTTCTGAGTCACTCTAGGCTAGAATATAGAATAGTCTTTTCGTTTATTTTTATAGAGTATATAAATAGTCTACTTAGAAAAGTAGCATTTGATTTGCGTTTACTTTTTTCTCTTGAAGTTTCAACTTCCCTAATAGAATTTTCATACCTGCAAATTGTTTTTCAGTCACTTCTAAACAGCGTATTGAACCTTCTTCTGGGAGATGATCACTGAGTCGTTTATTATGCTTTTGCATGGAGTCTCGACCTCGAATAATTCTAGCATATACAGAAAGTTGTAACATTTGATAACCATCTTTTAATAAAAATTGACGGAATTGATTTGCTGCTTTACGTTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 3 2223851-2229041 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBTG02000002.1 Pasteurella multocida strain FDAARGOS_220 unitig_0_quiver_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2223851 28 96.4 32 ............G............... TCTCCGATATAAGTCGAACAAAGTGCGTTATG 2223911 28 100.0 32 ............................ CGCAGGGTGAGCCGCTTTTATCAACAATAGAT 2223971 28 100.0 32 ............................ ACAAAAAATCCGAAAAAAGATAAATGCAGTTG 2224031 28 100.0 32 ............................ GCTTTTATCAACAATAGATCGTCAAACACAGA 2224091 28 100.0 32 ............................ TTGCCCAACTGATGAAAGCTCGCTAGATGACT 2224151 28 100.0 32 ............................ TTTAACTGCTCGCATCGCTTTAATTGCAGTCC 2224211 28 100.0 32 ............................ GTAAATGCGATATTTTGCGTTTAGATGAATTT 2224271 28 100.0 32 ............................ AAGACAGATCAATTCAAATTTGGAGTGAATTC 2224331 28 100.0 32 ............................ AAATTGGGTAACAGTCACATTCGGGGTGACCT 2224391 28 100.0 32 ............................ AACAATGCAAGGTTTTGTTACTCGTCAAGTAT 2224451 28 100.0 32 ............................ ATTTCACTTAAATCTTGTTGTAATGCTTGCAC 2224511 28 100.0 32 ............................ TATTTAATCCAACAAGCCACTTGATTGTGGCT 2224571 28 100.0 32 ............................ ATCATAATTGAGCCGAAAAATAAAGAATAAAT 2224631 28 100.0 32 ............................ GATGGGCTTTAGAATAACCAAAGATGTGAAAG 2224691 28 100.0 32 ............................ TACAGTTAAGAATGGCGCGATTGATTTAAAAA 2224751 28 100.0 32 ............................ TACAATTGAATTAAAATAAAATAAAAAGGTAG 2224811 28 100.0 32 ............................ ATACGAATTAATGAACCTGAAATTCTAATACT 2224871 28 100.0 32 ............................ TACTGGAAAGGTTACGGCTTGCAATGCTTTTC 2224931 28 100.0 32 ............................ GCTCACTAAAGATGTAGCTTTCAACGCAAAAT 2224991 28 100.0 32 ............................ GATGTGGTCGATAATTTGTTGCACAAACTCTT 2225051 28 100.0 32 ............................ ATGCGAAACAAGGCCAGTATAACAGAAAATAT 2225111 28 100.0 32 ............................ ACACAAGAAAGCTTGATTAAACGCTATACCGC 2225171 28 100.0 32 ............................ AATTTGTTTAATCGCCGTTTCTACCTCTTCAC 2225231 28 100.0 32 ............................ TGTTGCCAGTCTTACAATTAAGTTGTCTTGAT 2225291 28 100.0 32 ............................ ATATCCCGATTAATCCGTATCGTGCAGAAATC 2225351 28 100.0 32 ............................ GTATTAATGCTACAGACAGAGAGCGGATTATT 2225411 28 100.0 32 ............................ ATATCGAATGACTGCAACAGATGTAATAAATA 2225471 28 100.0 32 ............................ AGCCGTTGTTTTTTTGAAATTCAACAATCTCT 2225531 28 100.0 32 ............................ ATTTGATGTTCAAGAGGGCGTTTTGCTTTTGT 2225591 28 100.0 32 ............................ CCGAGCATAAAGCCAGATTTTCACATTGAAGA 2225651 28 100.0 32 ............................ ATTAAATAGTCAGCTTTAGGGAAATTAACATC 2225711 28 100.0 32 ............................ ATATTTCATCCATTCGCAAACTCCGCCAAATT 2225771 28 100.0 32 ............................ AAGCTTGATAACGCTTAAAATAAACGAGTTCT 2225831 28 100.0 32 ............................ GTGTTGAAGGTGGTGCAGCGGTCGATAACGAG 2225891 28 100.0 32 ............................ ATTGCTTGTTTTGAAAGAATTAGGTGGATGGG 2225951 28 100.0 32 ............................ AGAACCAGTGCCAGAATCACCAGAACCAGTGC 2226011 28 100.0 32 ............................ ACGTTTTATCAAGGATAGAGTAGAAACTACTT 2226071 28 100.0 32 ............................ TCCATAGTTGTCATTAAGGATATTCCCAACAG 2226131 28 100.0 32 ............................ TAGTTTCGGTTTGTTATCGTTACAATAACTAC 2226191 28 100.0 33 ............................ CAACTGGTCTGACCACTATTCCCACAAAACTTT 2226252 28 100.0 32 ............................ CATGAGCCTCATTTATTAATTAAGTACATTAT 2226312 28 96.4 32 .........A.................. GATCGGTGAAAAAATCGGGCGTGATTTCGAAA 2226372 28 100.0 32 ............................ GATCGGTGAAAAAATCGGGCGTGATTTCGAAA 2226432 28 100.0 32 ............................ TCGCTTTGTCGACAAGCCTAATACGTTATTTG 2226492 28 100.0 32 ............................ ACAAATTACAATCACAAAGAAAAGCGGGGATA 2226552 28 100.0 32 ............................ GCTGTCGGTGATGTTGTGTGTCACGCTTGTGA 2226612 28 100.0 32 ............................ AGAAAGTCTTTGTTGCTAAATGTACACAGCAA 2226672 28 100.0 32 ............................ TCTACTATCTACCTCTAGTCACACCAACAGAC 2226732 28 100.0 32 ............................ ATAAATTAGTCATAGGAATACGCTACGGGAAA 2226792 28 100.0 32 ............................ TTTTGTAGCAGAAAGCGCACTTAACTTTTCTT 2226852 28 100.0 32 ............................ AGTATCAGCTCGTCTTTTTGCGCTTCTGGAAT 2226912 28 100.0 32 ............................ TTACCAGAGCCAAAAATCACGGTTTTAACAGC 2226972 28 100.0 32 ............................ TAAAAATATTTTAGAAATTGCCACCGCACTTG 2227032 28 100.0 32 ............................ CTTGGCACTGGCTTTCTTTCAACATTGCACAA 2227092 28 100.0 32 ............................ TTATTCTGTTTTCGGTGTCCGTGGAAGCGGTT 2227152 28 100.0 32 ............................ AAAAGCAAGTCTTGCGCACTGAATCATCGCTT 2227212 28 100.0 32 ............................ TTTCAAATCAGTAACTTACGGCTTTTTTGTTT 2227272 28 100.0 32 ............................ GATAAGTGGTGGAATAACGGGGAACTCGTGGA 2227332 28 100.0 32 ............................ AATAATAATGTTTCATCATTTTGGCTAATACC 2227392 28 100.0 32 ............................ ACAACATAATCATCCAGCTTATGCGTGGGTCA 2227452 28 96.4 32 ............G............... AGATTTATATAATGCTAATAATTACGGATGGC 2227512 28 96.4 32 ............G............... AAGTTGGTTTGTATATGCCAATGATGAAGTTA 2227572 28 96.4 32 ............G............... CAACGTTGCCACGCACGAGGGGAAACATTTCC 2227632 28 96.4 32 ............G............... TTTAAATTATTTGAAACTAAAATAAAAAGAAT 2227692 28 96.4 32 ............G............... ACAAGCGCGCACAACATTCTCTAGTTATAAGG 2227752 28 96.4 32 ............G............... TCAACCAATCGATACATCCACAGAATACAGAA 2227812 28 96.4 32 ............G............... TTTTCAAACATTTGAGCGTGAAAGCAGTTGGC 2227872 28 96.4 32 ............G............... GTCGTGGTCGCTCAATTCTAAGTCTAACAAAT 2227932 28 96.4 32 ............G............... GAAATGTATCGGCGTGGGCGAGAAAGTGGCGC 2227992 28 96.4 32 ............G............... AATAAGCCCAAGAACGTTGGGTAACTCCACCA 2228052 28 96.4 32 ............G............... CGTGCGTCCAGTTATGCACGCCCACTTTCAAT 2228112 28 96.4 32 ............G............... TACTGGTATTTCTGCACAAATTACCAAAATGA 2228172 28 96.4 33 ............G............... AAAAAATGGCACTAGTACCAGTACCAAAAAACC 2228233 28 96.4 33 ............G............... AGTAAACGAAATAGCTGATAAAAACTGCGTTTT 2228294 28 96.4 32 ............G............... ATCTTTACTGAAAATCTAAACTACTCAGAACA 2228354 28 96.4 32 ............G............... ATCAGTTTTTCTTATACTGATGCAGAAGGGAA 2228414 28 96.4 32 ............G............... TAAATACGTTTTTAATTGGTTACGCCATCGCT 2228474 28 100.0 33 ............................ TGAAATGTATTCCGCTTTTTCCATCCAACCTGC 2228535 28 100.0 32 ............................ GCATCCTTTCCCGCTAATAGGTTTACCGTAAA 2228595 28 100.0 32 ............................ TAGTTTGATCACAACTAACCGTTGACCTTTAT 2228655 28 100.0 32 ............................ ATTCTTGTGGCTTACCAATGACTTCTGCTGGT 2228715 28 100.0 32 ............................ GCTACCGTTTAAGCAAGTACCACGCATTTTAA 2228775 28 100.0 32 ............................ AACAGTGCGGAAATTCTTCAATTCACTAAAAC 2228835 28 100.0 32 ............................ AGCGGTCAATGCTTCCACCACTTGATAAATAC 2228895 28 100.0 32 ............................ GTATTCAGCAAAATTTAACTCAGGAATGAGAC 2228955 28 100.0 32 ............................ TTGGATGGGACAATTCGTCCAGCGACAGATCT 2229015 27 85.7 0 ....................-..TC..T | ========== ====== ====== ====== ============================ ================================= ================== 87 28 99.0 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCGGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGCTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAACAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTGCGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACTTCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTTTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATCGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : TTGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCAGCCTGTTAGCTTATATTGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCTATCAGTTTGGGATCCGTGGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCTTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTCTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAAGGCATCGTTTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //