Array 1 19509-21305 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQJR01000030.1 Erwinia amylovora strain VTBL01-1 NODE_11_length_63169_cov_59.3603, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 19509 29 100.0 32 ............................. TTATTCATGAGCCTTTTTATCTTCGCGGCATG 19570 29 100.0 32 ............................. GTAAATAGCAAAATGATAAATAATTTATCAAT 19631 29 100.0 32 ............................. CTATGCAGAAGCGGAGGGCGGCGAGTGATGGA 19692 29 100.0 32 ............................. AGCATCTCGGGAACTGTGTTTTTTGTATAAAA 19753 29 100.0 32 ............................. AAGATGCTTTGACATTAATTATCTCCATAAAA 19814 29 100.0 32 ............................. CAGGTATTTCGGATAGCCGGTTGTCTCGGCGG 19875 29 100.0 32 ............................. ACTGAAATTTAAAATCACCGCTAACCCGCCAG 19936 29 100.0 32 ............................. GGCGATGAGGGAGTACGCGGAGCGGCAGGGTA 19997 29 100.0 32 ............................. AAAAGCCAACCGCCCGCCCGTAATAAACCTGA 20058 29 100.0 32 ............................. GTTGCAGAGACTTAAAGATCGTCTGCTAGTTA 20119 29 100.0 32 ............................. TAAAGGAGCATGCTTATACAACTGACAAAATC 20180 29 96.6 32 ...........A................. AGATTTGGCGGAAATGTCGGCGGAGATGCCCC 20241 29 100.0 32 ............................. AAATGTCCTGTGGCTCGGCCCGATGCTGCAAT 20302 29 100.0 32 ............................. GAGATCATTCTCATCCCTCATGTTTTCCAGGA 20363 29 96.6 32 ............................A ATTGTAAAATCCTCTCCGCCAAATTTGATTAC 20424 29 100.0 32 ............................. AAACTCTCGCATACATGGACGGAATTTAACGA 20485 29 100.0 32 ............................. ACGATTTGCCTGAAACCTCAACGAAGTTCGAC 20546 29 100.0 32 ............................. CTGATGGCGTCACGAGCCATACGGAATGTGAC 20607 29 100.0 32 ............................. CAAAAATTTGCGCATGTCATCTATCTTTTTTT 20668 29 100.0 32 ............................. TACATCGAACAATGCCAATTGTTGACGTTCTT 20729 29 100.0 32 ............................. CCGCGAAAATCCGCAGTGAGCTGGCAATGAGC 20790 29 96.6 32 .............T............... GCTGTCTATCTGGGCTGCCTCTATCCAGCAAT 20851 29 100.0 32 ............................. ACTTCGGTGAGAATGTCGAATTGCCACCAGAT 20912 29 96.6 32 ............................A TTGAATCAGAGTCTTTCAGGGACGATGTTTTC 20973 29 100.0 32 ............................. TGAAGCAGCCAGAATCCCATCCGGCCTTTATC 21034 29 100.0 32 ............................. GCTTTTGTACCCTTTACAGTCAACGTACTGCT 21095 29 100.0 32 ............................. AGATTGAGATCTTATCAACGGACTCTGACGCC 21156 29 96.6 32 .................A........... TTTCTTCACACACAACGGTGAGGGCATTGTCT 21217 29 96.6 32 ..................T.......... TGATAAAGTAACGTTCCGAATGGCGCGTGATG 21278 28 93.1 0 ...........A.....-........... | ========== ====== ====== ====== ============================= ================================ ================== 30 29 99.1 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : TTCCGCTAAGCATTGGCAGAGAGCGTTGCAGTGTATCACGCCGCGCGCTTCAACCCGGAAAAGCGTCCACGAAAAAGGCAGGGGCGGTTAACTCCCTGTCTTATTCGAGTGACTTCAACCCTTAAGGCGTCCGGTCGGTTGCTTAATAGCAACGATAATCAGCAAACTGACGTGCCGTATCTGCAACATCAGCAGGATTGCTCCCGGCGTTATCACTAGTATTGCCTTGATATAAGAGCGTGCGCGCAGCCTGTAAGTGCGAGCACGTAATGGTCGACAAAAATCAATCCGGTTTACAGGCCGGTTTTTTTCCGCCGCCACGCTGCCATTTCCGCTATATTCAAGAAGTTCACTTAGTCGATTACCCTTGTATTTGGCCGAGTATCAAGCCGACTTTTCCCGTTTTGAGTAGCAAATCCGTGCGTGCTTTAAAGTGGAAAAAAGTTGGTAGAATTGTAGGGCGGTAAAAAAATCACTAAGATCAGTCAGATAGTTTTAGA # Right flank : GCCATGCCGGACAGTATTGAGCAACTGGCCGACGCCGCTTTACAGGCGCTGGATACCATATGTGACAAACAGATCGCGTTTTTTGGTCACAGCATGGGGGGACTGATTGCTGTTGAACTGGCGCGCAAGATGGAAATCTGTTGGCGCAAACCCGCGCGCGCGCTGTTTGTTTCCGGTTGCCGTGCGCCTGGCGAACCGCTAACGCGCTGCCTTAGCGGATTGGATGATGAGCTGTTTATCAGACAGTTGGCCGGTTTAGGAGGCACAGAATCCGTATTGCTGGAACAGCCGGCACTATTGCGGCTGTTTCTATCCACGTTACGTCAGGATATTGCGCTGTGTGAACGTTATGCCGGGCCACCCCCTGCACCTTTGCAAACGCCAATCCATGTTATATGGGGAACGGAGGACGACTTAATTACGGATGTGATGATCGATTCCTGGCGTAAATTTTCTACTGAGGGGAACGTCTTTTTTTATCCTCTTCAAGGTGACCATTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 32213-34379 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQJR01000030.1 Erwinia amylovora strain VTBL01-1 NODE_11_length_63169_cov_59.3603, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 32213 29 100.0 32 ............................. CCATTTTATGACAGTCTGGCGCAAAAACTGGA 32274 29 100.0 32 ............................. GAGATGCACTGGATATACCGACTCCTCACTGA 32335 29 100.0 32 ............................. GCTCGGGGGGACATGAGCTTGTACAAAACAGC 32396 29 100.0 32 ............................. TTTTTAGCAGCGTGACAGTTATGGAGCCGCTC 32457 29 100.0 32 ............................. ATTATAAGGATCACTTGCTAGGGCATTATATA 32518 29 100.0 32 ............................. ACTTGACTGTTTATGCAGTGGTTGTATTTCTT 32579 29 100.0 33 ............................. ATCGGAACGACTTAGATTAGCGTCCTTGCACAT 32641 29 100.0 32 ............................. TAACCGCAACCATCGCCGCGATAAATCCACTG 32702 29 100.0 32 ............................. GTTGATACGGCTGATTACAATAAAATGTCACT 32763 29 100.0 32 ............................. TAAAAAATGCCGCCATCGAATCAGCAAAATCG 32824 29 100.0 32 ............................. CTGCGGAGCGTCAAACGGGCGTTAACTCTCGA 32885 29 100.0 32 ............................. CCCTTCTGGTGTTTTGATTCTCCTAGGTGATT 32946 29 96.6 32 ............................T AATGGACGAGATTTCACAGAAAATATCTGTTC 33007 29 100.0 32 ............................. GCTACTACGTGTACGCACAGCCGCTGGCCAGT 33068 29 100.0 32 ............................. CAGATGAGGCTGCAAATTCCAGGCACTTTTTA 33129 29 100.0 32 ............................. GATGGTCGTACCGATGTTTGCGAAAGATTCGC 33190 29 100.0 32 ............................. ACGGTCAGATGGTGGCGCTGGTTGCGCTGGCA 33251 29 100.0 32 ............................. CTGTTTATGAAAAATGCCAACAAACAGGAAGC 33312 29 100.0 33 ............................. ATTTTTCAGGAACGGGCCGACACGAAAATTTAT 33374 29 100.0 32 ............................. ATATTTACTAGCATTTCCCCATGCTGTATCAC 33435 29 100.0 32 ............................. CTGGAGCATGAGACGAAATCGGGGGTAGTGCT 33496 29 100.0 32 ............................. CCGGTTCAGGTTTGATAGGTTCTGCCTAACTC 33557 29 100.0 32 ............................. TTCGCATACGACAATCTCCCGGCACTGATTAA 33618 29 100.0 32 ............................. AGGGTGACGCAACGATTGTTGCAATTCCTAAC 33679 29 100.0 33 ............................. CACCAGTGTGTACATTCCAGACTCAGAAACCAC 33741 29 100.0 32 ............................. CCTCGAGGTGTTCTAAGCACTCCGGGGCTTTT 33802 29 100.0 32 ............................. GACGCTCAAATCAGTGGCGGCGAAACCCGACA 33863 29 100.0 32 ............................. CCAGAGGGGATTTAGCAAACGTCATTTCTGAC 33924 29 100.0 32 ............................. TCATCTGCGGGTCGGGTAGGCTGCTTACGGGT 33985 29 100.0 32 ............................. TCATCTGCGGGTCGGGTAGGCTGCTTACGGGT 34046 29 100.0 32 ............................. CAGCTATTCCCCGCATCGGTCAGTACTGCGCT 34107 29 100.0 32 ............................. TGGCCCACAATGGTAAAACCGGCGGCTTTCCA 34168 29 100.0 32 ............................. GCCAATGGATTCAGGATTGGAGCCAGAATTTA 34229 29 100.0 32 ............................. AAAAAAAGCCTAAAGCTCGAAAGAATAAAAAT 34290 29 96.6 32 .........A................... ATGATGGCGCTGATAGTTTTATTAGATGTCGA 34351 29 79.3 0 ...........AC..A.....C...T..A | ========== ====== ====== ====== ============================= ================================= ================== 36 29 99.2 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : ATTCCTCTGATCGAAACGGTGCTGGCTGCCGGAGAGATCTCCCCACCCCCACCCCCGCCGGATGCCCAGCCGGTTGCCATCCCTGAACCACAGTCTTTTGGCGATGTCGGGCACCGGAGTGCGTAATATGAGTATGCTGGTGGTGATCACTGAAAATGTTCCTCCCCGTCTGCGCGGACGTCTTGCCATATGGCTGCTGGAAGTGCGTGCGGGCGTGTACGTGGGTGATGTTTCGCGCCGCGTGCGGGAAATGATTTGGCAGCAGCTTAATCAGCTTTACGAGAATGGCAATGTGGCGATGGTATGGGCCACTAACAGCGAGTCGGGTTTTGAATTTCAGACGCTGGGTGAGAATCGCCGCCTGCCGGTGGATTTGGACGGTCTGCGGCTGGTGTCATTTTATCCCGTCTGACATGCAAACCGCGGCTTTTGACAGCAAAAAATCCGGTAGATTTTGACGGGTAAAAAAAGCCGTTATGGTTCAATGGTTTGTATCTAGA # Right flank : AATAATATGTTTAATGCCAGCCCGGCTTCGGTATTGCCTCGCCGGACTGAGCCTGGCTACATTACCGGTAAAAGAGGGTAACGCTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGCCTGGTCGAATATCGCCCTGGGTTCGATTGTTAAAACCATGCAATACGTATTATTGGCAGATGCTAAGTGGGCCTCCTTTGAAACCAGCAACGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAACCCCTCTTTGGCTTGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCAC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 43843-44171 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQJR01000030.1 Erwinia amylovora strain VTBL01-1 NODE_11_length_63169_cov_59.3603, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 43843 28 100.0 32 ............................ TTTACGTTTGCGTTAACAGTAAGCTCTGCAAC 43903 28 100.0 32 ............................ ATCGCACCCCACTGATTGAAGAGCAGCACACT 43963 28 89.3 32 ......C..T..........T....... TAGCAATAAATTCGATAGACGCTGATTTGCGT 44023 28 96.4 32 ...................T........ TGGCTTCAATTGCGGTCGGGTGTGATGCATCA 44083 28 96.4 33 ..........................G. GCCAACGTTCACTGTCATTTAGCCACGCTTCCG 44144 28 78.6 0 .....A........G.....T...TTG. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 93.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGGCGTTTAATATGGATAAACCGTCGTATGAGGTTAAGCGGGGCGTTTATGAGAAGTGGACGATCTCAGGCGAAGGCGATGAGATGCTGCATCCGTTCCATATTCACGGTACCCAGTTCCGCATCCTGTCGGAGAACGGCAAACCTCCTGCCGCGCATCGTAGCGGCTGGAAGGATACGGTACGTGTTGAAGGCTGGCGCAGCGAGGTGCTGGTGCGCTTTAACCACCAGGCAGACAGGGCACATGCCTATATGGCGCACTGCCATCTGCTGGAACATGAAGATAGCGGTATGATGCTTGGTTTTACCGTGGCGTAATAAATACAGACTGGCGTTATAGGATGGTTTTCGCCGGGTAACAGGCCTGTCTGGCGAACCCTTTTTTCTAAGATTTAACTTGTTGATTTCTAAAGCGTGATAATTCAACAGAAAAAAGGGTACAGCACGGTTAAGCTGGTAAAAAGTTAATGCGATAAGCCAGTTAGCCCGGTAATGTAACG # Right flank : AGGACTGAATGACTTCTCCCCTTGCCTGAAAGCATACTTTGCTTCACGGGCTTCTCATGCTGTGGACATTACGCTGACAGGCAGAAAACAGGTTATCCGTGGCACATCTCCGCTGGCGCCAGCGGCTTCACCGGTGCGCCTGACCTTACCTGTGCAGTGCGGTCTTACCGCCGTTGTATGCAGATATGATTAAGACGGTTGTTTCACTGCAATTAAATCAGCTAAATGTAAAATAAGAAAAACCCCCGGTTAAAGTTCTTAATTTGAGAGTATTAAGTGGGGGTTTTTCACGGTTTTTTTACAATAAAAAAAGAAAGATCTTATATTTTTTTTATGCTCATAATTTGGCTGTTGAACCTGTTTTTAAGCTATTTGAAATTTTTTTACTCAATAATTTCCAGAACTTTCATTTTGAGTTAGCCACTTTTTTTCTCTCCTTTTTCTTCGATAATGGTTCCGCATGCAGTGCAATTGACGTTTTTTGTATTGAATGAAATGCA # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //