Array 1 59613-59431 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBEG010000015.1 Sporohalobacter salinus strain DSM 26781 Ga0454048_15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 59612 37 100.0 35 ..................................... GATTTGAATAGATTTGCGACCCTGACTTTCGAAGA 59540 37 100.0 36 ..................................... TGTTTCTTATAATACTGGTACAATTCTCTTCTTAAG 59467 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 3 37 100.0 36 GTTACAATACTTACTCCGCAAGCTAGGAGACTGAAAG # Left flank : GACGGCTACATAAAAATGGGATTTATGTTCATGTTTTGCAAATCGGAAAGGCAAATGATAAAGAAAAAGAGGTATTAAAATCTGTTGCTAATTTAGGTGGTGGAAAGTATTTTACTTATTCTGATAGACATGCAGTAGTTTCTACTATGAATTTGGTTAACAATAAGGGGGATTAATATTTAACTTAAAATTTTATAGTGATGTTCTGATAATTTCACATTAAAGACAGGAATTAAATATTAAATATAGAAATAGTTCATCAACATGATAAACTTAGTTTTCGCAAACTGAGTGAAAGTATTAGATATTGGATATGATTTAAGTGATGATTTTTTCTTTTCAATTGATATAATCCTTATTATAACAGGGGTTTATGGTAGTTTCGAAAAGCTCCGGGGGTTTCGTGCAAGATTTAGTTTTCGAAATGATTTCGGTGGTTTGAAAGAAGTTAAGTGTTATAAACCCCGACAGCATAGGATTGGTATTTCTATTTTGGCGCG # Right flank : AAAGATAATAAGGGTTTGTGAAGGAAAACATTAAAATTTTTTCTTATTAAAATCCTGGATCATTTTTATGATCCAGGATTTTTAATATTATAAGAATAATATCAATTTTTAACTTTGCTAAAGTTAAATCGGTCTAAGGCGATTTTAAGAGGTTTTAAGGTGTTAAAGGACAATAACTTAATTTGAATAAAAATGAAGTATTACATAACATATAAATTGGTTTTGTTGGAAAAGATATTAAATTACTAAATTAAAAGGAGGGCTAAACAAATGTTGAGTAAAAACTCTGTTAGAAATTCAACATTCATCTTAATTTTGCTGGCTATGAGTACTATTGTCATTGCTTTATCAACACCAGCATTTGCAAATGAAGTCATAGTAAAAAGAGGTTGGACGCCAATTCCAGATGGTGAAACGGGGACAAAGAAAGATATTACAATGAAAAATGATCAACTAGCAGTTACAATTACTGGAGCTGGTGGTTCAAAACCTCCTTGGGG # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAATACTTACTCCGCAAGCTAGGAGACTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.40,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 84404-84955 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBEG010000009.1 Sporohalobacter salinus strain DSM 26781 Ga0454048_09, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 84404 37 100.0 38 ..................................... ATAGAAACTAGAGTTTTATTGGGCTTTTGTCTAATTTT 84479 37 100.0 37 ..................................... ATCATTTCATATCTCCTCCTCGACTTGTTCTAACAAT 84553 37 100.0 35 ..................................... GTAAACGGAAGTAGGAAGTTTCAATTAGCATATGA 84625 37 100.0 34 ..................................... TTTTCCATCAAATCTTTTAGGTCGTCTTGAGCCT 84696 37 100.0 37 ..................................... CTCGGTGTTGTCGCACCGAGTTATTTATTTTTTTATG 84770 37 100.0 36 ..................................... AATCATCAAAACTGTGTGTTTTGCCTATTTTGATAG 84843 37 100.0 39 ..................................... GAGTACAGTTATCCACAACAGGCAATTAAGAAAATAATG 84919 37 81.1 0 ......G...........CC.A..........T..GT | ========== ====== ====== ====== ===================================== ======================================= ================== 8 37 97.6 37 GTTATAAACTACATTCCATTACAACAAGGATTGAAAC # Left flank : AGTAACTCGCTCTGCACTACAGAATGCTGCTAGTGCTGCTGCTATGTTACTGACTACTGAGACTTTAATAGTCGAAGATGAAGATGAAGATAGTGACGGCGGTGGAGCACCTGCCGGAGCACCTGGAGGCGGAATGCCTGGTGGAATGGGCGGAATGCCTGGAATGATGTAATTTAGCTTCATAGTTAGACTTTAATCCCTCTGGAGAATTTCTCCAGAGGGATTTTTATTTAAGTAAATTTTGGTAAATTAGAAGGAGATTCGACAGTCTTATCTAAATAAATAAGTGAAGGATAAGTCATTACGACGGTAAATTATTGACGTATAAATATACGGACTTTGATAATTTCTATAATAACAAGTTTAGTCCAGTGTTAAAATTCGCGGCAAACTGTTGAAAATAAGCCGAAATGTATAGATATGCAGTCTGAAATCGGCAACTTATTGTATAAGGAAATGCCGCTAAACACTGATATGACAGGAAAGCATGTCAAAAACGG # Right flank : TTACTGAATACTGTGTTATCGTTTATTCAAAAAGGAGTTTATATCTATGAAAAAAAGTAGGGCAGCTAAAATATTGGATATGTTAATGTTATTGCGATCTCACGGAAAATTAAAATCAGCTGAGATTGCTGATAAAATTGATGTTTCTCAAAGGATGATTAGAGAATATAAAAAAGATTTACAGGAGATTGGGGTTTATGTTAATTCTGAACTTGGGAGATGTGGAGGATATTATATAGAATTTGATAATACTATGTTAGATTTAGGACTTGATGAACAAGAATTTTCTGTGCTCAAGGTAGCTAAGAAGTATTTAAAACAAGAAGAGTTTGTTTTTATGCGAGAATATGAACTGATATTAGATAAGATAAATGCCTATTTACAAACTAAAGATGAAAATAAAGATCTGGGAGATTTAGTATTAGCTGCTAGTCCTAATATTGACCAGCAGGAAGAAAAGTTAAAGTATATGCAAATTAATGAAGCTCTTATGAATCATA # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:0, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATAAACTACATTCCATTACAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA // Array 2 95097-95731 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBEG010000009.1 Sporohalobacter salinus strain DSM 26781 Ga0454048_09, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 95097 37 100.0 38 ..................................... ATCAGAATGAGCAGGCAGAAAAACAGCCTTATATTGAT 95172 37 100.0 36 ..................................... GTTTTCTGTGTTCTCTAGACCAATGCAGGCTACTCG 95245 37 100.0 37 ..................................... CCGCCGTATCCCCAACCCTCGAATTTAATTCTGCAAT 95319 37 100.0 36 ..................................... CTATTAGATTTTTACATGGCTCCGAAGTTGCATGGT 95392 37 100.0 37 ..................................... ACTTTTCGTCCAAAATTTCCACCTTCTTTCAACAACA 95466 37 100.0 38 ..................................... GTCGGAGAATTTAGCTTTAATCCTATAGACTTCATTCA 95541 37 100.0 43 ..................................... TCCTAAAGCAAGAGAGCAGGAATTGATCGAAGATGCATGCAGA 95621 37 100.0 37 ..................................... TTTCAGACTATATAGGTTTGAAAGGTGAAAGCGAATA 95695 37 97.3 0 ....................................T | ========== ====== ====== ====== ===================================== =========================================== ================== 9 37 99.7 38 GTTATAGACTACATTCCACCAAAACAAGGATTGAAAC # Left flank : AATTTCAGATAATTATGATATTAAAGCTAATAAAGCATTTATAGTTTATATTAGAAGCAAGAACAAATTAAAAGAGATAACTATAACTAAAAATGATTTCAAGAAAGTAAAGAAAGTATTAGAAGAAATAATTCAAATAATAAAGAAGGGATATTATCCAAAATCGACTTCTTATCAAAAAAGGTGTAGAGATTGTTGCTATCGAAATATATGTATTAAGTAATTAGATAATGAAAGTAAGGTAATTAAAGGCAGGAAGTTCAGTGGTTTTATCTAAATAAATAGATAAAGGATAGAGTTATTACGACGGTAAATTATTGATGTATAAATATACGGACTTTGATAATCCCCATAATAACAAGCTTAGTACAGTGTCAAAATTCGCGGCAAACTGTTAAAAATAAGCCGAAATGTATAGATATGTAGTCTAAAATCGGCAACTTATTGTATAAGGAAATGCCGTTGAACACTGTTATGACAGAGTAGTATGTCAAAAACGG # Right flank : GTTTGGAGGGGAATTACCGAATTATAGCCAATTCATCCCCGCTGATGAATTGGCTATTTCAAGATTGGTTAAATACTAATCTTGAAATTCTTCTTTATGTTCTTTAAAAAGCAATTCTAATGCTTCGTCAAACAATTTAGATTTAGGTATTCTAGTTTTATTATTAAGAACATCTAACTTATTTACTAACTCATTTTTAATAGTAGTAGTAACTTTAGTTCTATTTTTTAAAGCCATAAATTTCACCTCCGCTAAAAATATTATATCACTTCATTAATATACTTGCAAGTACCATAACTATATGGTATAATATAATCAATTTGAAAGGAGGTGTAAATGATGAATAAGACTTATATACTACCTATCGAGCAACAAGATTTAGCTCATAAGTTATCTAGATTAAGTGGTCGTA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATAGACTACATTCCACCAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 1 81752-81349 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBEG010000006.1 Sporohalobacter salinus strain DSM 26781 Ga0454048_06, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ===================================== ================== 81751 38 100.0 37 ...................................... ACATTATGATCTGAAAGAAAGAGTAATAGAAGTAGAG 81676 38 100.0 36 ...................................... CGATAATGTGGTTCATACCTCATAGCATAAGTATCA 81602 38 100.0 33 ...................................... AGAAACTAGAGCGATTTTTTGATTTCTTGAAAT 81531 38 97.4 33 .....................................T TATTTGAATCTCTGAGGAAGTAACTATCTCCCT 81460 38 100.0 36 ...................................... GAGATTACTATAGATAAATTAGCTTATCCTAATGTT 81386 38 94.7 0 ..................................TT.. | ========== ====== ====== ====== ====================================== ===================================== ================== 6 38 98.7 35 GTTACAATACTTACTCCGTAAGGTAGGAGACTGAAAGA # Left flank : AAGAAATTGAACTAATAAAAGATACAACTAGCTGGAAAAGTTGGTATCGGTATTCAAATCGCCAAAACAAGAGAATAAAAATGAAAGGTTTGGTAGGAGAGGTTGCTTATCAAGGAAGTTTGGAAAAGTTTCTACCTTATTTGATTTTAGGGCAATATAGTCATATAGGGAAGAATACTGTCTTTGGATTAGGAAATTATAAAATACTGAAGTAGCATGTTTCCAATGCAGGAGATAATAGGATAGTATGGAAATAAATCATTGAAGGATAAATTAGTTTTTCGAAAACTACAAAAAATACTGGTCTTAATGCTAAGGTAAAGATGATTTTTTGAACATTGAAAGCTTAATAATTACTATTATGTCAAGGTTGAGGATGATTTCGAAAACCTACCGGGGTTTCGTGCAAGATTTAGTTTTCGAAATAACTTTGGGATTTTGGGAGAAGTGAAGTGTCATAAAGCCTGCCATCATAGGGTTGAGATTTTTGATCTGGCGCG # Right flank : CAAGGGTTTATTTGCTGATGTGTTAAAAGATTGCTGTCGATATGAGTAAAGCAGTTGAAATGGGAAATCTCCAGGGATAGTGGCGGAGATTTTTATTTTAGTTATGATTTCATTTATGAAATCATATAAACTTAAAAGCAGCCAATGATTGGCTGCTTTTGAAGGGGATGTGAAGAGTATACTGATTATTAGTAATTTATTAGAAAAAATAAGCATTTTAAGCAGGAATATATTATAATATTTAAATATTATAATAGACATAGCTAGAAAATTAAAATTTACAAGGAGGCCGAAAAAAATGACTGAAAAGAAGCAACCACAGATTGAAATTTATACTTTGAACGGGTGCCCATACTGTAATAAAGCTAAATCTTTCTTAAAGAGTAAAGGATTTTCCTACCAAGAATATAACATTAATGAAGATTCTGCTGTGAAAAAAGAAATGATAAAGAGAGCTGATGGGGCTAAAACTGTTCCCCAAATTTTTATTGATGATCAAT # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAATACTTACTCCGTAAGGTAGGAGACTGAAAGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.53%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.40,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 103774-103449 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBEG010000006.1 Sporohalobacter salinus strain DSM 26781 Ga0454048_06, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 103773 36 94.4 36 .....................AG............. GCCCAATACTACTTTTGGGATGATCAACATCCGGCA 103701 36 94.4 36 .....................AG............. GAGTTTTGCCGAATGGATTAGAACTGCTCGATCAGC 103629 36 100.0 36 .................................... GGTATTAGCAGAAGTGGACGACGTTATCTCTGCTGT 103557 36 100.0 37 .................................... GTTGTATGATAATCTTGCCACCTTAGCGGGTGGCTTT 103484 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ===================================== ================== 5 36 97.8 36 GTTACAATACTTACTCCGTAAGCTAGGAGACTGAAA # Left flank : GTTACAAACTAGATGAAGAAGATAAGAAAAAGATAGAGGTTAGAGCTAAGAGTAGATTGTCGGGAAACGAAAAGATTTTTCAAGATACAGAGTAGGAGAATTGCCCGAGGCTGGTTTGCATATCGATATGGACTTCGGAGAGAAAGAAGTATACGCTGAATACAATTACAGATTCTAATTTTTCCCCGCTGCCATTTGGTGGCGGGGTTTTTATTTTTATTGATAAGCAGGAATTAAATGTTGAATCTAGAAATAAATTATTAGCAAAAAATAGATAGTTTCGAAAACTGCAAAAAATATTGATTTTAATGCCAAGGGAAAGATGACCTTTTGAACATTGAAAGCTCAATAATTCCTATTATGCCAGAGGTTGAGGATGATTTCGAAAACCTACCGGGGTTTCGTGCAAGATTTAGTTTTCGAAATAATTTTAGTGTTTAGGGAGAAGTGAAGTCTTATAAAGCCTGCCAGCATAGGATTGAGATTTTTGACTTGGCGCG # Right flank : AAATTATGTTAATGGCTAATCTCTCATTGAGAGGGATTAGCCATTTTTTGTTTTAACTTTTTTCACCCAAATAAAAAAGGTAATAATCAAAAATTGAAAAAAAGAAGGAATTACATATTTTGGAAAAGAAGTATGTAATAAAGATGCTTTAAAAATAATTTAAAAAGGGGTGATTTTAGTGTTTTCAAATTTTAAGCCTAGGTGTATGATTTTATTAATGGTAGTTTTGGTTATATGGAGTAGTGCTGTTTTGGCAAATGATAAAACTATGAAAAGTAAAATTATAAGTGATATTAAGGCTAAAAGTAAAATTGATAAGGATTTAAATAGGAAGTTAAAATCTAGTTTAAGGGCTTCAAGTAATGCTTTAGAAGCTAATGAAAACCCAACTGTTGAATGGGCTCGTGCTATCGGAACAAAAGGATCTGAAGAAGCTGTTTGGTTTGAAAAAACAACAGATGGAGGATATATTATTGTTGGAGAGAATTCAGAGGGAAGTG # Questionable array : NO Score: 2.95 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAATACTTACTCCGTAAGCTAGGAGACTGAAA # Alternate repeat : GTTACAATACTTACTCCGTAAAGTAGGAGACTGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.40,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 3 135689-135115 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBEG010000006.1 Sporohalobacter salinus strain DSM 26781 Ga0454048_06, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =========================================== ================== 135688 28 100.0 38 ............................ CACAGTTAGCTCTATCTCTCCTACTGACGGCACAAGCT 135622 28 100.0 43 ............................ CTGCTCCATCTCTGCTCTCATTGATTATCTCGTGATGCTTCTC 135551 28 100.0 43 ............................ CGCGCAAGTGGTTCATGACTTAGAAAAAAGTTATGATTATCTT 135480 28 100.0 38 ............................ CGGACTTGGTAACTTCCCTACTGAGTACCGTTCGAAGC 135414 28 100.0 40 ............................ CTTAGCTTTTAAGTGAGCAGTCCTAGTTCTTTCATCAATA 135346 28 96.4 40 .......................G.... TTAGACATTATGTAACAAATTTGAATGTTACAGAATCAGC 135278 28 96.4 41 .......................G.... TGTGATGAAGCCAAATATCCATTTCATTGCTTTTCCTCCTC 135209 28 92.9 39 .................C.....G.... TGTAGATAACTGGTTTGAGGAAGCTGAGAAAAGTATAGA 135142 28 89.3 0 ...................G...G...G | ========== ====== ====== ====== ============================ =========================================== ================== 9 28 97.2 40 GTTTTACATTAACTATGTGAGATATAAA # Left flank : AGCATTTTATTGAAGATCAGACTTATAAATCTCTAAAGGCTTGGTGGTAAAATGTTTGTTATACTAACTTATGATGTAGGAGTAGATAGAGTAAATAAAATTAGAAAGTTGTTGAAAAAGTATTTAACTTGGACGCAGAATTCAGTTTTCGAGGGAGAAATAACTAAAGGAAAGTTAGATAAATGCTTGAGTGAAGTTGAAAAAATAGTTGATAAAAATCATGATTCAATATATATTTATACTATAAGGTCCACTAAGTTTATTTCTAAAAATATATTAGGAAATGAGAAGAGTTTTGATGAGTTATTTCTATAGTTTGCAGTAAACCTATTTTTTTGATAAGATGTCACAAAGTGTTGATATGATAGTGTTTTTGTTTGTTTCAAAGGAATTTAATTTACGCTACCTTACCTTTACTGCAAAATGGATTAATTTAGTTATTTTGAAAAGGGGAATGAGTCAAAGAGTAGTAACGATTGCAGGCAAGTAGTAAATTTGGG # Right flank : CAAGTATAATCTTAGCAGAAATCCATGAGGAAAACGATTTTATAAAACGACTAACATTTGAAGTATAATAGGTGTAAAAATAAAAAACATACATTTTAATTTGTGATTTTCAATTTAAAAACACTTCACAAATCATATCAATATTTTCAGATATTGTAATAATAAATTTGCTTTAAGTATAAGAAATAAGGAAGAACATTTTGTCTTACTGATTTTTAATTTTTTTGACGATTTCAGATTTAGAAGCGAAGCTGAATTTAAAGTTCTTGTTAGTTAATTCTTGCATTGCTTGTTCCAATAAACTTGAATAATGATTTTTAAGCTGATCAGATTGAAATTCGTTAGCTGTCAAAAATATTAATTTATTATCAATATTAGTAACTAGCTTAAGGTTTGAAAACCAAGTATTAAAACTTGAAGCAGGTAATTCTTCCTCAAGAAGTTTATATAATTTTTGCCATTCTTTTTTAATATTTTCATCAATTTCAGATTTGTATTTG # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTACATTAACTATGTGAGATATAAA # Alternate repeat : GTTTTACATTAACTATGTGAGATGTAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:78.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 4 140840-140283 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBEG010000006.1 Sporohalobacter salinus strain DSM 26781 Ga0454048_06, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 140839 29 100.0 37 ............................. TAAAACAAGATGCCCTATCTGCTCTAACAACGGAAGG 140773 29 100.0 36 ............................. TTGCTAGTGTTTGAATAGCAGCATCATAACCTCCGA 140708 29 100.0 35 ............................. AAAAACATTTAACTTTCATAAATTATCACTCCAAA 140644 29 100.0 38 ............................. CTGCCACTAGACCCATCAATCACCCAATTATCCGTCCA 140577 29 100.0 35 ............................. GAGACTGATGTAATCGCTAGTTATGATAACTCTAA 140513 29 96.6 37 ......C...................... TCAGCAGAAATGAAGGTTTTGAGTGTTGAAGAAGCAG 140447 29 96.6 37 ......C...................... TAATTTAAGCTAGAACAAGAAGTTTTGGCTAATTAAT 140381 29 100.0 38 ............................. ACTAATCCAGATTACGACCCGATTTTTGTTTCTAATGA 140314 28 93.1 0 ...................A...-..... | T,AA,C [140286,140291,140295] ========== ====== ====== ====== ============================= ====================================== ================== 9 29 98.5 37 GTTTTATATTAACTATGTGGGATGTAAAT # Left flank : AATATTTAAGTTTGGGAAGAAGAGAAGATTTAATAAGAATTGATGAAATTAAGTTTGTGGATTTAGACGAATATGATCCTTGGGAAAAAGGAAAAAATTATTTTATTAAATATCCAATTTATATTCCAATAAATAAAATCACTGAAGAAATAGAAGGGATAAACTATAGATTAAATTGGAAATACAAAATAATTGACGATTTAAGACAATGGGAAAAAATTGATGTTAAATATGTAGAAAAAGGCTCAGAGCTTTCTGATGAAATAGATATAACTATTGATGAAGATAAGGATTTAGTATTTTTCAATTTATAGTTTGCAGTAAACCTGTTTTTAAGAGGAAAGAGCATAATTCCTTGATATAACTGCGATTCTAGAGGTGATTATTAGAATTGAATTTACGCTATTTGAGGTTTACTGCAAAATGAGCTATTTTAGAGCTTTTAAGAGATACTCTAAGTTAAGGGATGACAATGGTTGAGAGTGAATAGATGATTTAGG # Right flank : AAAAGGAGGTTGAAAGTTGATATATGCTAAGTCAAATCCAATAGAGAGTTTGAAAGAACATACTAATAGTCTAGTGAACAATTATAAAGAATTGAAAAAAAGTTATGGAGAAAAATTAGATGAAGATAATTTATTAGATCTATTAGAAATTGCAGTTAAATATCATGATGCTGGTAAAGTATATAGTCAGTTTCAAAATATGATTATTAAAAATATTAATAAGTATCAAGATGAAAATATTAAGAGAATTGAATCAGAGTTTGAAGAAAATGTACCTCATAGTTATTTATCTCCTGCTTTTTTGCCTTATCAAAATTGGAATTATAACAAAAAAACATTAAAAGTATTATTTCAAACAATAGCATATCATCACGAAAGAGATACAGAACCAGATAGTAAAATAATTGCTAAGATAGTAGAGAAAGAATTAAATAAGAAAATAAATGAAGTTAGAGAGGAGTTAGAAGTAGAAATCAATGATAGATTAGTTTCTTTATATA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGGATGTAAAT # Alternate repeat : GTTTTACATTAACTATGTGGGATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //