Array 1 2271-1848 **** Predicted by CRISPRDetect 2.4 *** >NZ_QOKX01000020.1 Pseudoalteromonas sp. JC28 scaffold20.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 2270 31 100.0 34 ............................... CAATGGACTTCAAACGTCAAATGCAAACGGTTAT 2205 31 100.0 34 ............................... AGCAATGGTGATGGTGTTTTGGGTTAGCTCATAA 2140 31 100.0 36 ............................... TGTCTCAGGCATCGCACCTGAGTAGAAGAACGCAGT 2073 31 100.0 33 ............................... ACACTATTGCGTAACAGCTGTAAATATCGTGGC 2009 31 100.0 34 ............................... CGCGCAATGGACGTTAAGTTAACTGAGTGTTGTT 1944 31 100.0 35 ............................... CTCGAATTGGGAACCACGCTTCACGAGAACATTAA 1878 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ==================================== ================== 7 31 100.0 34 GTTACACCCCGCACACATAGGGGATTGAGAC # Left flank : AAAGTCGCTGCTACGACTTGGACGGCCGAAGCGGTTAGCGCTTCATGGACGAATCAATGTGCACGGCCTAAAACTAGAAAGCTTTATAGCTAGATACCCCGTTTAATAGGTTGAAACCCGTCTCGAGACAAGCGAGTTAATAGATTCGCGACGTAAAGTCATAGCAACACCAGCCCCGTAGCAGCGGGTTTATCCCGCGATAGGAACTGTAAAATCACTTTAAGATATCTAATTTAAGAGATTCGCGACATAAAGTCGCTGCTACGAGTTATACGCCCTTCCCCCAACAATGCGCTGATGCCATAGCTTTTGATCTGTACATTATCGCTAGCCTTAGGCTCTCATCAAAATCCCTCATAGCTAGCGGCAAGTTAACTTTATGAATACCTTATAGTTTATTTAACAACCAGTAGCACAAGATCAAAAATAGCAGTACAATGACCATATCTAGCGGAAAACCGCTGATTCGCTCTTTAAAAATAGTCGCTTTGGCGCTGGCT # Right flank : CTATCCGTTTTTTCTCACGGATAGATTGGTTTTTTTGTTTGGAGATACCCTGTCTAATAGGTTGAAACCCGTCTTGAGACAAAATAGATTCGCGACATAAAGTCGCTGCTACGAGTTGGACGGCCGAAGCGCTTCATGGGCGGATCAATGTGTACGGCCTAAAACTGTAAAACCAATTAAAGATATCTAATCTAAGAGATTTGCGACGTAAAGTCACAGCTACGCCAGCCTCGTAGCAGCGGGTTTATCCCGCGATAGGAACTGTAAAGCCAATTAAAGATATCTAACCTAAAAGATTCGCGACGTAAAGTCGCTGCTACGGGCTATATGCCCAACTGCTCCCTCTACGTACATAGATTTAAACCCATAATATTAAACCAAACCAATATCCTAGGTTTGTTGAGCCACTTTTGGGCATAAACCTTGCTGAAGTTGTTATACATATTTCAGAAGGATTTGCTAAATGAAAGTTCAACACCAAGCAATGCTATATAATCAGG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACACCCCGCACACATAGGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.60,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.74 Confidence: MEDIUM] # Array family : NA // Array 2 3235-2922 **** Predicted by CRISPRDetect 2.4 *** >NZ_QOKX01000020.1 Pseudoalteromonas sp. JC28 scaffold20.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =================================== ================== 3234 35 100.0 35 ................................... GGCTTCAAGAATAAAACTCTTTCGCATACCAGCTT 3164 35 100.0 35 ................................... TCAGCACCAAAGTGCTGCTTGACGTCTTTCAAAAT 3094 35 97.1 35 .....A............................. TTATTATATCTAAAAGACAAACCCAGCTTGTGAGC 3024 35 100.0 33 ................................... ATTTTTTCAACGAATATAGCATCGTCAAAATCT 2956 35 74.3 0 .........................TTGAA.CCCG | ========== ====== ====== ====== =================================== =================================== ================== 5 35 94.3 35 GTTTGGAGATACCCCGTTTAATAGGGGATTAAGAC # Left flank : TAAAAATAAGCATTGAAACTTCATAAAGTTAGCAAGATTGTATACAAGTTCCTATTTTATACTGTGCACAAGTATTTAGTTAGTCTAAAAGCATACACAATGAGCTATATTTGAGTTATTAAAAACCAATCAACATAACCAAAAAGAATAAAAGGTTTACACACTTTTTACCTTCTAATGCACTACACTTGCGGTTATCCACAAAATTCGACCACATAAAACTTGCTCACTTTATAAGCTGTGGACTGTAATCGACTTTGCTCTTTAAAAACATCATGTTATCACTGTACCCATGACGTAATATGACAAACTCATCGGAACAGACAAAAACGCTAAAAACCGCACGTTCTGAAGCCATTGAACTTTATCGGTTTTATGCAATAGCCCGTAAGCTAAATCGCACATATGTCAGTAGCTATTGACTATTTTAATAACTCTGGTAAAACTATGTGTTATCCACCGCTGCAGGCCGCGCCACACAAAGCGTCAACACTGTAAGG # Right flank : TCTTGAGACAAGCGAGTGCTCGCAGCTTGGCTAGGGTTGAAACTGAGGCCTTGGACGGCCGAAGCGGTTAGCGCTTCATGGACGAATCAATGTGCACGGCCTAAAATTGGAAAGCCACTTTAAGATATCTAATTTAAGAGATTCGCGACATAAAGTCGCTGCTACGACTTGGACGGCCGAAGCGGTTAGCGCTTCATGGACGAATCAATGTGCACGGCCTAAAACTAGAAAGCTTTATAGCTAGATACCCCGTTTAATAGGTTGAAACCCGTCTCGAGACAAGCGAGTTAATAGATTCGCGACGTAAAGTCATAGCAACACCAGCCCCGTAGCAGCGGGTTTATCCCGCGATAGGAACTGTAAAATCACTTTAAGATATCTAATTTAAGAGATTCGCGACATAAAGTCGCTGCTACGAGTTATACGCCCTTCCCCCAACAATGCGCTGATGCCATAGCTTTTGATCTGTACATTATCGCTAGCCTTAGGCTCTCATCAAA # Questionable array : NO Score: 2.77 # Score Detail : 1:0, 2:0, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGGAGATACCCCGTTTAATAGGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.50,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 99706-100363 **** Predicted by CRISPRDetect 2.4 *** >NZ_QOKX01000012.1 Pseudoalteromonas sp. JC28 scaffold12.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ========================================= ================== 99706 31 100.0 38 ............................... GTCAATAAAGACGACTCCCATGATGATTGTTACTGTTC 99775 31 100.0 38 ............................... ACGCTTTCTTCAGATTTAGAAATAATCTCTGAATGTTC 99844 31 100.0 39 ............................... AGGACGTTACTCCCCTCTCGTAAGTACGATTGCGTGTTT 99914 31 100.0 41 ............................... TAAGAAACCCATGCTTCTATTAATTCGTCAGTTGCGGGTTT 99986 31 100.0 38 ............................... TTACCCAGAAAAGCCTGATCTCTTCCAGTTTCTAGTTT 100055 31 100.0 39 ............................... AAACTAAGCCTAAAAATAAAATAGGGAAGATGATAGTTC 100125 31 96.8 41 .................C............. CATCCACATGTGCAGATGTTATTACAATTGCTTCTGCGTTC 100197 31 93.5 37 .................C...........G. TCTACCTGAGTGTACCCTGTGCTTCGAAAAGTTGTTC 100265 31 100.0 40 ............................... CAGTACTTACCGTCGACGAAGCCAGAGGCTCCGAAGGTTC 100336 28 80.6 0 .....................---C.G.A.. | ========== ====== ====== ====== =============================== ========================================= ================== 10 31 97.1 39 GGAGATACCCCGTTTAATAGGGGATTAAGAC # Left flank : AATAAAAAATGAGATTTCAGCAAGTTAGCAAGATTGTATACACGTCCCTATTTTATACTGTGTACAAGTATTTAGTTAGTCTAAAAGCATACACAATGAGCTATATTTGAGTTATTAAAAACCAATCAACATAACCAAAAAGAATAAAAGGTTTACACGCTTTTTACCTTCTAATGCACTACACTTGCGGTTATCCACAAAATTCGACCGCATAAAACTTGCTAACGTTATAAGCTGTGGACTGTAATCGATTTTGCTCTTTAAAAACATCACATTATCACTGTACCCATGACGTAATATGACAAACTCATCGGAACAGACAAAAACGCTAAAAACCGCAAGTTCTGAAGTTATTGAACTTTATCGGTTTTATGCAATAGCCCGTAAGCTAAATCGCACAAATGTCAGTAGCTATTGACTATTTTAATAACTCTGGTAAAACTATGTGTTATCCACCGCTGCAGGCCACGCCACACAAGGCGTCAACACTGCAAGGGTTC # Right flank : CCCGTCTCGAGACAAGCGAGTTGAGACATTCGCGACGTAAAGTCGCTGCTACGAGTTATGCCCCCTCCCCCTCAACAATGCGTGTATGATCCAGCCTTTGATCTTATTATCGCTAGCCTTAGGTTCTCATCAAAACTCCACACAGCTAGCGGCAAGTTAACTTGATGAATACCTTATAGTTTACAAAATGACCCGTGGCACAAGATCAAAAATAGCAGTACAATGACCATATCTAGCGGAAAATCGCTGATTTGCTCTTTAAAAATAGTCGCTTTGTGTTTAATTTAAACATAACACGCTACACCCCGCACACATAGGGGATTGAGACCATGTTTTCGCATTTCGCTAAAACCTGCCTGACGTGCTACACCCCGCACACATAGGGGATTGAGACCAGAAGGGCGAGATTATCAATAACGGAGGACGCAGTTTGGAGATACCCCGTTTAACAGGGGATTAAGACATAAGTTGACAGCACCAGCTGGCACCATGTTCTTAGT # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGAGATACCCCGTTTAATAGGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.84%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 102371-103023 **** Predicted by CRISPRDetect 2.4 *** >NZ_QOKX01000012.1 Pseudoalteromonas sp. JC28 scaffold12.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ==================================== ================== 102371 35 100.0 33 ................................... CTCTATAGAAATAGGGGTAGATGGTGATATTGG 102439 35 100.0 33 ................................... TGATAGTGGTGTTTTCATCCACCTCAGTCATTT 102507 35 100.0 34 ................................... CGTTTGTTCGCCGTCCGCTCAAAATTATTTAAAG 102576 35 100.0 34 ................................... CAATAGTCAAGCCCTCCCAAATCACGGATAATGG 102645 35 100.0 35 ................................... GTATCCCCGGTGTTGTAACGAATAGAATCGTTTAA 102715 35 100.0 35 ................................... CCATCGCTGATCAACGTGTTTTTTTCAATACGAGT 102785 35 100.0 36 ................................... AACCAGTCCGAATTCGGCTTTACACTTACAACTTGT 102856 35 100.0 33 ................................... ACATTTATATTTAGCTCTCTGGCTGTGATTTGG 102924 35 91.4 33 ...C...A.............C............. TTGGCGTGCCCATCCACTGTGTGAAAATCACGA 102992 32 85.7 0 .........................---..G.A.. | ========== ====== ====== ====== =================================== ==================================== ================== 10 35 97.7 34 GTTTGGAGATACCCCGTTTAATAGGGGATTAAGAC # Left flank : ATAACAATAAGCAATGAAATTTCAGCAAGTTAGCAAGATTGTATACAAGTCCCTATTTTACACTGTGTACAAGTATTTAGTTGGTCTATAAGCATACACAATGAGCTATATTTAAGTTATTAAAAACCAATCAAAATAACCAAAAAGAATAAAAGGTTTACACGCTTTTTACCTTCTAATGCACTACACTTGCGGTTATCCACAAAATGCGATCACATAAAACTTGCTCACGTTATAAGCTGTGGACTGTAATCGATTTTGCTCTTTAAAAACATCACGTTATCACTGTACCCATGACGTAATATGACAAACTCATCGGAACAGACAAAAACGCTAAAAACCGCACGTTCTGAAGTTATTGAACTTTATCGGTTTTATGCAATAGCCCGTAAGCTAAATCGCACAAATGTCAGTAGCTATTGACTATTTTAATAACTCTGGTAAAGCTATGTGTTATCCACCGCTGCAGGCCACGCCACACAAGGCGTCAACACTGCAAG # Right flank : CCCGTCTCGAGACAAGCGAGTGCTCGCAGCTTGGCTAGGGTTGAAACTGAGGCCTTGGACGGCCGAAGCGGTTAGCGCTTCATGGACGAATCAATGTGCACGGCCTAAAACTGGAAAGCTTTTTAGTTTATACAGCGATTTAAAGCTGAGCCGTAATACATCCCTGTAGCTGGTTCCATCAGGCATCGCCCTCACCTCCTCAAAACAAGCAAGTTAAAAGAGTCGCGACGTAAAGTCGCTGCTACGACTTGGACGGCCGAAGCGGTTAGCGCTTCATGGATGAATCAATGTGCACGGCCTAGAACTGGAAAGCTTTTTAGTTTATACCGCGATTTAAAGCTGAGCCGTAATACATCCCTGTAGCTGGTTCCATCAGGCATCGCCCTCACCTCCTCAAAACAAGCAAGTTAAAAGAGTCGCGACGTAAAGTCATAGCTACGCCAGCCCCGTAGCAGCGGGTTTATCCCGCGATAGGTACTGTAAAACCAATTAAAGATATC # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGGAGATACCCCGTTTAATAGGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 3 103891-104180 **** Predicted by CRISPRDetect 2.4 *** >NZ_QOKX01000012.1 Pseudoalteromonas sp. JC28 scaffold12.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 103891 31 100.0 33 ............................... TTACCTACTAAAATGGTAGAAGCTTTAGGAACA 103955 31 100.0 33 ............................... AGGGGAGCCTATGAGTGATGTAACGGTAGTGAT 104019 31 100.0 34 ............................... CTTGATAGTGGAGTGGTAGATAAAACATTAGCTC 104084 31 100.0 35 ............................... TCTTGCCTTAGCTTCATAATCCAAAAGGTTCTATA 104150 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== =================================== ================== 5 31 100.0 34 GTTACACCCCGCACACATAGGGGATTGAGAC # Left flank : TCCATCAGGCATCGCCCTCACCTCCTCAAAACAAGCAAGTTAAAAGAGTCGCGACGTAAAGTCATAGCTACGCCAGCCCCGTAGCAGCGGGTTTATCCCGCGATAGGTACTGTAAAACCAATTAAAGATATCTAATCTAGAAGAGTCGCGACGTAAAGTCATAGCAACACCAGCCCCGTAGCAGCGGGTTTATCCCGCGATTAGGTACTGTAAAACCAATTAAAGATATCTAATCTAAAAGAGTCGCGACGTAAAGTCGCTGCTACGAGTTATGCCCCCTCCCCCCTCAACAATGCGTGTATGATCCAGCCTTTGATCTTATTATCGCTAGCCTTAGGTTCTCATCAAAACTCCACACAGCTAGCGGCAAGTTAACTTGATGAATACTTTGTAGTTTACAAAATGACCCGTGGCACAAGATCAAAAATAGCAGTACAATGACCATATCTAGCGGAAAACCGCTGATTCGCTCTTTAAAAATCGTCGCTTTGGCGCTGGCT # Right flank : CTCGCAAACTTGGTTGATGGCAAACTAAACTGTAGGGTTACCCCCGCACACATGAGTTGAAACGTCAGCTTTACTCAAGATCATGCAGAACATAACGCAATGCAGTCATGAGTGAAATTCAAAATAAAATACATTACAAGGAGTAACCAAGATGATGGAAAAAGAAGATAACCAAGTTAGTGCTAACACAACTCCTCTTACACTTACAGTTTATGCATTATCTATTCTGCTGTTACTATTAACCGGTGCTGCTGGTAATATCCTATTGCAGTTATTTCCTCATTCACAGGGGCTACTCACAAGTGTCTTATGCATATGTGTTGTTGTGGTAGCAATTTCGCTTTATAAGCTCTTTTCACTGCGCTGGGAGTTTAATAAAAGAATGGGTTATGACGATACCCATACAAACCAAAGTAAGGTTTTAGAGTGCTTTTACGTACTCACAGCAATTACGTTACTCGCAACAATTGTTGCTTGGTTTAGTAATTTACTTACAGTGT # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACACCCCGCACACATAGGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.90,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA //