Array 1 65037-64273 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYRH01000011.1 Lactobacillus crispatus strain UMNLC18 SNF2W1B1M4S27118, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 65036 29 96.6 32 ............................C AAACGTTTGATTGTTCGGATTTTTTGGGAAAT 64975 29 100.0 33 ............................. TACAGATGACTATGATTTGCTCAAAGCCGGTGG 64913 29 100.0 32 ............................. CAGCAAGATCACCAGAAATATGTCTAAGTTCA 64852 29 100.0 32 ............................. ACGATGGGGACATTATCATTTATAAATTAACA 64791 29 100.0 32 ............................. ACAGCGATGAAAAAGCCGAGAACGTGATTCTG 64730 29 100.0 32 ............................. TAATGTTTATTGGACATTACATTAATAATTGT 64669 29 100.0 33 ............................. AACTACTATTTTGCGTTTGATAACCCGAAGTTA 64607 29 96.6 33 ..T.......................... ATAACCACAAGTCGTGCATCTGCAGTAGGGATG 64545 29 100.0 32 ............................. GGTTACGTGCTTAACGATGGCACTGTAATTAC 64484 29 96.6 32 ............................C CCTTGAACTTGTTTCCATTGTTCAAAAGTATA 64423 29 96.6 32 .............A............... GTTTCCACATACCTTGCATTCAGCTGATTTAA 64362 29 96.6 32 .............A............... ATCTCTAGTAGCTCCTACAAAAACATCAATAT 64301 29 86.2 0 .............A.........AT.G.. | ========== ====== ====== ====== ============================= ================================= ================== 13 29 97.6 32 GTATTCTCCACGTGTGTGGAGGTGATCCT # Left flank : TTCGTGAACAAATTCTGCGACTGACTTCACAAGAAGTACCACATGCTACTGCTGTCGCAGTTGATCATATGAATACTCATCAAAATGGCAAGCTCTTGATTGAAGCGACTATCTATGTTGAGAAAGACGGTCAAAAAGGCATTATTATTGGTAAGGGCGGTAAGATGCTCAAGCAGATTGGGATTAATTCACGTCAAGAGATTGAAAGATTGCTTGGTGAAAAGGTCAACTTGCGTCTTTGGGTTAAGGTCCAACATAACTGGCGTTCTGACCCTAACTTTTTAAAGCGGATAGGCTATGACAAAAAAGAACTTTAGTTGAATTACTGTTGTATAAGCGTTGTCGAAAGATGACGTCTTTTTTGTATGTTTAGGGAGACAAGAAAATTCTATTCGTTGGATGACTAATGAGACAGAAATAGATACAATAGTAATTGACAAAGTGATGAAATTTTGGGATCTATTGTTTTGTGATTGTTGTTATATTGGGATTTGTTTACT # Right flank : ATATTGGGATTCCTGAAGAAATCATGAATGTAATTATACGAGACCACAAGGAAAAATTTTAAAATCTCAGGCTTCTAAAAAGCAAAAAGAAATTTTTAATAGTTGGCAGGAAAAATGAAAGAAAATATGTAAAGACAACTAAAATAATCAACAGAGCTGCTCTTGGAATATTTATTGTTGCAGTAGTAATTTTTTATTATAGGGTTAGTGAAGTAAAATGACAGTTAGTGAAGCACAAAAAAAGACGACTAAAAAGTGGGATACCAAAAACAAAACTCGAAAACAGTATTTAAATCGGTTACTAAAAATTTTATTTTGAAAGAAGCCACCACAGAGGACCTTGAACAAATTAAAAAGTATTTTGGGCAAAGAAAACACGGAAAAGATTGATTGTGGTAGAAAACGCTGCATGAATAATTGTAATTTTTAGTAAAAAGTTTTGGAGGCACTTTTTAATGATTGATTTAAATAGTTCAGATATTATGGACGCACAAGAAGCT # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.96, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTGTGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 89424-87745 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYRH01000011.1 Lactobacillus crispatus strain UMNLC18 SNF2W1B1M4S27118, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 89423 29 96.6 32 ............................C ATACGGGATTCCTCTTTTCCATTTATCTTTAG 89362 29 96.6 32 ............................G TAAAACCACGTGCGCCAGATAAGCCAGCTATT 89301 29 96.6 32 ............................C TAGACGTTTCTTGCATAGATCTAAAAAATCGT 89240 29 100.0 32 ............................. TAACAGGTGGTGCGTCTTATTTTTGGAAAGAA 89179 29 100.0 32 ............................. AAAATAGACGTTAACCTAGTCCCAAACATTTG 89118 29 100.0 32 ............................. AAGACAGTTATCACAAAAGCATCTTCTTATTA 89057 29 100.0 32 ............................. ATTTTGGGATTTAGCTTTACATTTTCCATATA 88996 29 100.0 32 ............................. CTTCGCCAGCATAAACGTTTAATCCTAGTCCG 88935 29 96.6 32 ............................C ATAGCGCCTTACTCGACCAGTATTGGTCAAAG 88874 29 100.0 33 ............................. CACTCATTTTTTGTTGTTGATAAATCATGAGTA 88812 29 96.6 32 ............................C TTTCTGAGTTCCACAGTGTCGTAATTATCATA 88751 29 100.0 32 ............................. GTCCTAAGCCGTTTGCTCTGGTGTCTTCTGCA 88690 29 96.6 32 ............................C ATCTGGGTCGATTCAATCGGCTTAGTAGCAGG 88629 29 100.0 32 ............................. GTTGGTGCTGTTCGTGCTGGTAAAACTTACAT 88568 29 100.0 32 ............................. ATCCGTCATGACAAGCTTATGGAAGAAATAGT 88507 29 96.6 32 ............................C ACGCCAAAGCAACAAGAGCAACCAACGCAACA 88446 29 100.0 32 ............................. TTGGGTGCTATTAATGTAAACCCAGAAAATAG 88385 29 96.6 32 ............................C ATAACGCCTTACTCGACCAGTATTGGTCAAAG 88324 29 96.6 32 ............................C CACTTTGACCTTTAGAAAGCCCTGCGGCTAAC 88263 29 96.6 32 ............................C ATACATTGCGTTGGCTCTATGAATGTCTCCAA 88202 29 96.6 32 ............................C CACAACCAGTCCAACCAGAAACTAAAAAATTT 88141 29 100.0 32 ............................. CAGCACTTAGTAGTATTATCTGACTTTGCAAG 88080 29 100.0 32 ............................. GTCCCAGCACTTAATTTTAATCAAACACTTAC 88019 29 100.0 32 ............................. ATTTATTTATGGGATTAATTTAAAGAATTGTT 87958 29 100.0 33 ............................. ATCTTTCTTTTGTTTTTTAGTTACGTGTGTGTA 87896 29 93.1 32 ...........AC................ TGTTGCCAAGCAAACGTCAGCAGATTTTCAAT 87835 29 89.7 32 ...........AC...............C AATCTAGTTTATGATACAATAAACACAGATAT 87774 29 82.8 0 ...........AC....T......T.A.. | A [87753] ========== ====== ====== ====== ============================= ================================= ================== 28 29 97.4 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : TGATAAACCAACGCTTGAAGTTAATAATGCAGTACCTAACAAAGAAATTATTAATTTACGAAATTTCATTATAAAAACAAACCAGATAAGATCTGATTTTGTCTCCTCTCTTAATTCACCTAAGCTATTGTAGCTCAGCAGTTTTACGAGAAAGTTACAATTAAATTTCGATTAATAACAAAAAGTTAGTATGAGTATATGTGAATATGCTTTTGATTAGGCTAGTTAAAAGCGGATGATAAAGCAGTGTCATGGCTAAAGTGTTTGGGTGAAATTCTTAATTGTGAGTAAGAAAGATTGGCAGACAAATAATATTTTTGTTTATTTGTTTAGGAGGAATCATAGCAGAATGATATTATGATTCCTCTTTTTATTTGAATATTATGTCCAGCAGATATTGTCTATTTAATAAAAATCGATATACTTGGTAGTAGGATCAAAGTGATGAAAAAATGGTGTTTGCGTATTTTCATTTGGCGCTATAAAGGGATTTGTTTACT # Right flank : GTCCTTGAGCGCACAGATAAATAGCCTGTAAACGCCGGTATGCCAGTATTTTTGATAGATGAAAAGTGTACTAATTCCTCTTTTGGTGATTGGAATTAGTACACTTTTTGCTTGTTGAGCTAGAGGGTCGAGTGGATAACGTGCTGGATTTTTAGGTTGTATAGATAAGTGTCCGTTTTGGGGAGTTGAGTTGGTTAAGTTGATGAGAGAAGCAGTAATGGTTGATATGACGATAAGATAATGGATGTTAATTATTAAAGATATTTATAATCAAAGATTTAATCAATTTTTGTAAAATGCTTTTATGCTAGATTTATATCGCAATAATCAAATGGAAGGATTAGAAATATGGTTGACTATATTGCAAAAATTAAACCAATAAATGCGGATAAAATTGAAACACAGGCGCATGGAATAGCAACATTCAGTGAAAATGGTAATAGCCTTCATATTCATGTGGAAATGTTTGATACGCCTGCCAATATTAAACATTGGGAACA # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 92545-92151 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYRH01000011.1 Lactobacillus crispatus strain UMNLC18 SNF2W1B1M4S27118, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 92544 28 89.3 33 ............TA.........C.... CAGTTTAGGTACCATTTTTTGACGATCAAAATC 92483 28 100.0 34 ............................ TGACAAGGTTGACCAAGCCGTTAAGACCATGCAA 92421 28 100.0 33 ............................ TTAAAATAATTAAGGAGGGAACTCCAAATATCG 92360 28 100.0 33 ............................ CAATTTCTTCCTTCGACATGTCCTTAAGAGCAT 92299 28 89.3 33 ...........ACA.............. TGACAGCTCTGCTGTAGTGATCGAATCAGACAA 92238 28 89.3 32 ...........ACA.............. TCCGACGGGGTACCCCGCGGCTGTCCATCATC 92178 28 71.4 0 ...........ACA........CT.AAT | ========== ====== ====== ====== ============================ ================================== ================== 7 28 91.3 33 GTATTCTCCACGAGTGTGGAGGTGATCC # Left flank : CGGTTTACACCCAACACCAGAAGATGCAAGTAATGATTGTTACTCAGCACCCACAGCATATTATCGATGGAATTCAGAATCGAATGCATCGTGGAATCACTATTTTGCACGATGCTGAAGGTGCATATAGTCATATTGAAAAGACAGTTTTGATTACCATTATTGATCGATATGATATGTATGATATTCGCCAAATCGTGCAAGGAGCAGATCCGTATGCTTTCATGAGTGTTAGTGAAGTTGAAAAAGTATATGGCCGCTTCAAGGAGCAAGAAATCGTTTAATGGATAGCCCTTAAACCTTGATATATAAGGATTTATAAATGAAATTTGAATCCTAGGGGCACTTTGGGAGCAAAACTATTCAAAAAGAAGCAGAAATGCTTCTTTTTTATTTGGAGTGGCTTTTTGTAATTATGGCTTTATTATTGGTCTTTGTTAAAAGTGATTAAAAATGATATTATTTCGATTGAGCGATGCTGATATATTGTGGATCATTTA # Right flank : AGCTGCTCTGAAAAATATGTTCTATAGAGTGACTGTTTTTGTATATTATTTAAAAATATTGTTGATGGTGCACGGAGATTGCGTTCACTTATATAGTGAAAAGATGCTAAGAAATCTAAAATAGAATCGAGATGAATTGGTAATCTGGTAATCGTAAGAAGGACTTAGCTACTAATCGTTGTATTCAATTTTGATAACAAATTAGTTAAAGAGCAAAAAATATGAAGAATTATAAATTTAATAAGTTTATGTAAAAACAGTGTCATTAAGTTAGGCTATTGATTTTGGTGAAAAAACAATTAAAGCATCATTTGGCTTTAGACGGCCAGATTGATGCCTTTTTGGCATATTTTTCTAAATATCATTCGCGTTACACGTAAAAGCGTGTGTTGTATATAGTGAAAGGAGGCTAAGAGAATCGGAGCTAAGAGGTGACAAATATGCCGAAAGCCCAATTGCAAAGTGCAAAATAAAAAACCACAAATCAAAGTTTACTTCAA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.56, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGAGTGTGGAGGTGATCC # Alternate repeat : GTATTCTCCACACATGTGGAGGTGATCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 4 123508-122195 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYRH01000011.1 Lactobacillus crispatus strain UMNLC18 SNF2W1B1M4S27118, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 123507 29 100.0 32 ............................. AAAAATACCTAATTCGCTGGCAATTTGCGTGA 123446 29 96.6 32 ............................C AAAAAGACTGGTCGAATTGAGCCGTCTAAAAA 123385 29 96.6 32 ............................C AATAGCTATCTTTTTATCAGAGTTAAGATCTA 123324 29 100.0 33 ............................. CACCTTTCATTTGTTCTGCAGTTACTTGAATTG 123262 29 100.0 33 ............................. AATCAATCTTTTATCATCGGATAAATCTGCTAA 123200 29 100.0 33 ............................. ACGTTGGTATGGTCGCTACATGGAAGACAGCTA 123138 29 96.6 32 ............................C GGTCGAATTCGTGGCATGACTGATGAACTTGA 123077 29 100.0 32 ............................. AGTGACTTGCCATTTGATTAAAAGAAAGAGTG 123016 29 100.0 32 ............................. TAGGTGCCGCACTACTTATGGTTGGTGGTGCT 122955 29 100.0 32 ............................. AATTCATTTTGTGCCTGCTTTCTATCGGCAAA 122894 29 100.0 32 ............................. AATCTGTTGAAGAATAGCAATGCTTTATTTGA 122833 29 100.0 32 ............................. AATATTTTACAAAGATGGGGTTCTGATTGGTG 122772 29 96.6 32 ............................C TAGTACTGCTTTTATAAATAGAAAACTGAATG 122711 29 100.0 32 ............................. AAAAATGTGATTCTTGCTACAGGATCAGCGTG 122650 29 100.0 33 ............................. CACGATTAACAAGGCTATGGGCGATGGTGGGGT 122588 29 100.0 32 ............................. AGTCGTTTGATCAGTAACACCGTCACTGTTGA 122527 29 100.0 32 ............................. ATTGAAGAAACACAAATTGCAGATAAAGCAGA 122466 29 100.0 32 ............................. GCGCCTAAGTTTTGACCACGAAATACGTTGTT 122405 29 96.6 32 ............................C TCATGAGTTTCACCATATCGATTAATTAAGCG 122344 29 100.0 32 ............................. GTTGGTGCATTAATGGAAGATGCATATTTAGA 122283 29 96.6 32 ............................C AAGGCTGTCAATATCACCGTTCCAACGTGGCT 122222 28 86.2 0 ..............C.......C-...T. | ========== ====== ====== ====== ============================= ================================= ================== 22 29 98.4 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : AAAGCACTATTGAGTGATAAGAAGTTTGATCAAGCTGTTTTTTATCTGATGGATAATTTGAATTTATTAAAACAATCATTAAGCGCTGATATGGATTATAGTCAATTATTTGAAAAACTGCGAAAGTTAAATAAAAAATTAAAGGTATTTCTAAGCCTTTTCATTATATGCCTAAAAAAACACGTACTATCAATCAGGGAAGGAGAGCAATTAATGCCATAATTAGCAATATTATTGGTGCTGATTGTAAAAAATTACAAAATTTGCAAGATGAACAAATCTTTCAGATGTATCTTGAAGCTAAGCTGCTAAATCAAAATTGGATGAAGCTTAACGATGATCGGGGAGTTAGTCAACGAATCAGAAAAAGAGAATCTTATTTTATTCAATTAACTTTGAATATCTAATTACATAAATTTTGAAAAGTGAGTCTTCTTAAAAGTGATTGAAAATGTTATGATTTGAATTAAGGATCATTGATATAGCGGGATTTGTTTAGT # Right flank : ACTCTTGTATCAAGGGATTTCTCTAAAAATAAAAAAATAGATAATCGATTAACTTAATCATTCTAAAAATCGTGCTTGATCTAACTTCCAAACATCGTTATACTAAAGAAAGTGTTGCATCGAGAATCCTTATTCACGATGCCCGATCAACAGAAATTTTAGCAAACCTCTTAAAGGCGACTCGCTTTTAGGAGGTTTTGTTTTTTTATTGCCAAACAAAAAAGATGACAAAAATGCTGTAATCATTCACAATAGGGAACAACAAATTGTTGAATTAGAGGATTTAATTATGAAAACAGTAAAGAATATTATTATCGGCTTTGGTAAAGGCGGCAAAACGCTAGCTAAATTTTTAGCGAAAAAGGGCGAAGAAGTCCTAGTCATTGAAAAATCTAATCAAATGTATGGTGGTACTTGCATTAATATTGCTTGTCTGCCATCTAAACGCTTAATTATCGAAGCGGGTAATGGCGTGGATTTCGTAGATGCAGTTAATGGTA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //