Array 1 136-3668 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMOE01000031.1 Deinococcus aquiradiocola strain JCM 14371 sequence31, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================================================================================== ================== 136 37 100.0 34 ..................................... TCACGCTGGACGGCCTGCGCCTGGAACTGGAGGT 207 37 100.0 35 ..................................... CTGCAAGGCCACACTCTGCAAGTGAAAGCCGTGAA 279 37 100.0 33 ..................................... GCGTAACCCGACCACGGCGGAACTGACCGCGAA 349 37 100.0 35 ..................................... ACCGCGACGGGCAGCGCCCCGAGCGCCCCCGCTGG 421 37 100.0 36 ..................................... ATTCGGGCAGCTGGCCTTCAATGATGATGTGGGCGC 494 37 100.0 36 ..................................... TGGCGTACCGCGTCCCGACGCTCGCCAGCGAGCAGG 567 37 100.0 37 ..................................... GTGTAGTGTGCGAGTTGCACGCTGGCGGTGGTGGCCT 641 37 100.0 36 ..................................... GCGAAACTCATGCGCCGCACGCGGTTTCCGACGTTC 714 37 100.0 32 ..................................... ATCTCCTTCATGAGGTCATTCCGTAAGGCACG 783 37 100.0 36 ..................................... GCCGCTGGACTCCATGCTGGACAGCACGCACCGCAT 856 37 100.0 35 ..................................... GTGGTGAGACTCCACTCGCGGAAGTCCTCAGCGGG 928 37 100.0 34 ..................................... AGGGCGATCATCAGGGCGCTCTCGGTGTTGCCGC 999 37 100.0 38 ..................................... GGAGACATAGGGCCGTGGCGGAGGCTGCATGCCGCAAC 1074 37 100.0 35 ..................................... TGCAGGAGGAAGAGGACGGCCTGAAAGGTGAGTGC 1146 37 100.0 36 ..................................... GTGCAGTCCACCACCAGCCACAAGCGCAACATCAGC 1219 37 100.0 42 ..................................... CCCCAGGTCCTCGCAGTTCTGGAGGTAGATCGGGTGGCGCAG 1298 37 100.0 35 ..................................... ATCAATGCCGAGCCGTTTCAGCACGACGCGGGTCA 1370 37 100.0 34 ..................................... TCAGTGTGGCCTCCAACGAACGAACGATGCAATG 1441 37 100.0 37 ..................................... TCTGGGCCATGTGCGTCCTCAGCAGCCACGGCAAGCG 1515 37 100.0 36 ..................................... GCAGGATGTACTGGTCTAGGTCGAGGTCCGGGTCAG 1588 37 100.0 36 ..................................... TGCAGCATGCCGACCTGCACGCCGTACCCCATGTGC 1661 37 100.0 36 ..................................... AGTTCTGGGTGGTGACCAGCCTGGAAAGTTGGGCGT 1734 37 100.0 35 ..................................... ATCCAGCTCGTCCCCGAGGCCGTCGCCGTCGTGAA 1806 37 100.0 35 ..................................... GCGAAGAAGCAGGACGGATTCTCGACGCCTGCGAC 1878 37 100.0 40 ..................................... ATGTGCATCTGATCGCTGCTGTACATCGGGCGCGGGCTCG 1955 37 100.0 35 ..................................... GCGAAACCCTCCGCACCGCCGAACAACGCGCCGCG 2027 37 100.0 36 ..................................... ACCTGGAAGAGCGGCGGCAGACTGCAACTCAGCATC 2100 37 100.0 34 ..................................... GGCAAACCGGCGGGCCTGACCGCGTACCTCGCCA 2171 37 100.0 34 ..................................... TCGCAGCGCGTGCAGGGACAGGCCATGCAGCAAC 2242 37 100.0 37 ..................................... TCGTCAAGATCATCCCGTTCACCCGCACGCACACCGG 2316 37 100.0 35 ..................................... GGCATCGCGGAGAGCGAGGGTCTGCACGGTGGGAC 2388 37 100.0 37 ..................................... ATCGTGCGGTAGCCGACGTTCGTGAGGTGCACGCGCA 2462 37 100.0 36 ..................................... GAGTACCGCATCGGGCACCCGACCGACGTGCGCCGC 2535 37 100.0 37 ..................................... AGTACCCGCCCGCGCCGGTCAGCACGGCCGAGATGAC 2609 37 100.0 36 ..................................... GCCAGCTGCGGGTCCAGCCGCACGAGCGCGGACGGG 2682 37 100.0 34 ..................................... GGCAAACCGGCGGGCCTGACCGCGTACCTCGCCA 2753 37 100.0 35 ..................................... GTCCAGAAGTACGGCACCCCTGCGACGGTCACGAA 2825 37 100.0 36 ..................................... GTGGAGAGCCTGCTGCAGTGCGACCCGGGCAGGCTG 2898 37 100.0 36 ..................................... ACGAACGAGTGGCAGACGTACTCGCCATCGGCGTCA 2971 37 100.0 35 ..................................... AGGCGACGGCGGCACGCACGGCTGCAGCCTCCAGG 3043 37 100.0 36 ..................................... AGCGTGGACAGGGTAACGGTGGGGTCGCTCAGCAGA 3116 37 100.0 39 ..................................... TGGAGTGAGCATGGCAGCTTCAACCCGCGCGGTTGGTTT 3192 37 91.9 36 A..T................T................ TGTTGTAGAAGGCCTGCAGGGCAGTGACGTAGCGCG 3265 37 81.1 37 ..............T.....A...G..T.GT..C... CACCTATCAATTGAACAAAGTCACCGGGCGTCACGAA 3339 37 78.4 36 ......TAGTA..G.........C......T...... GTGTACGCGGCTGGGCGGCTGTACTATCCCCTGAGT 3412 37 91.9 107 ........CT...T....................... CACCTGTCAATTGAACAAAGTCACCGGGCGTCACGAAGCTGCAGGATGAACCTCAGCAGGGGGCAGAAACCCCTGTTCAGGTGGCGGCCTGCACAGCCAGGGGGGGC A [3440] 3557 37 91.9 37 .T............T.....................T CACCTGTCAATTGAACAAAGTCACCGGGCGTCACAGA A [3585] 3632 37 78.4 0 ........CT................C..T.G.G.GA | ========== ====== ====== ====== ===================================== =========================================================================================================== ================== 48 37 98.2 37 GCTGCAGGACGAACCCCAGCCGATAGGGGACAGAAAC # Left flank : GAAAGAGCTGAGGGCTCGGCTGCGTGCGGGATGGCAGAGGATTCGGTACATCAAGTTGCCACAACGTCTCATGGAGGTAACCTCAATTTAAACCGGTATCAATATAAGCGCCGCACGCGCAGGGGGACCAGGTAGG # Right flank : ATGGAGGATGAAGGCGTTTCGGTGGATTTGAAGGTGGGGCTGAATGTTGTTGTTCCTGGGTTCGCAGTGAGCATCAGGAAGTTAGCCGCTCACCAGTGGAGGAACGCGGGTGAGTGTGGGGACCGGCGTGGTTCATGCGGTGTGTCGCGGTAAGCCCAGGCGTGTCTGAACGCGGTTGATGCTCACGAAGGGTTTTGTAAGGTTCTGGAGCCGCCTCACGTGTGTGTTGAACTCTTGCTCGCTTATTGATACCGGCATAGATTGAGGTTGCCTCACCTAGCAGAGACCAGAGACTGGCCAACCCTTGGAGATTGTCGGGATCAGGAGTTCACTCTCATCATTCGGATTTCCATCGACTCGAACTTCTGCCGGTATCAATAGCTCCTGGGTGAGGTTGTCGTGGTCGTGCGGGACTGGTCTCCGGTATCGGGAGTCTGTGTGGAAGGTGCGGCCGCGTTGAGTACGCTGACTCGCAGGCCGCCGTTCAGTGTGACTTCCAT # Questionable array : NO Score: 3.04 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.12, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGCAGGACGAACCCCAGCCGATAGGGGACAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.00,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-34] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 277443-277693 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMOE01000003.1 Deinococcus aquiradiocola strain JCM 14371 sequence03, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 277443 37 100.0 36 ..................................... CGCCCAGTGTCAGCGCGGCCCGCAGGGACGCCGCGC 277516 37 100.0 34 ..................................... TCGGTGGGGATCGGGAGTGCACTGTCTTCGACCC 277587 37 100.0 33 ..................................... GCGGGGAGCGGCACGGCAGGCACGGCGGACGGG 277657 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 4 37 100.0 35 GTTGCAGCCCGCCTACGGGTGGGCTGAGGATTGAAAC # Left flank : ACCCTCAACCACCCACCGGGCGAGTCGTGTCGTTCAGCGGAGAGGGCTGCGGCGCAGGCGGACCGGACACGTCCCCCGGCGAAGCGAGCCGAACCACCGGCGGCACAGCACTCGGCAAGGCGGAAGGGCCAGAGGCAAGGGTCAGGCCAACAACGAACAGAACAATGATCTGCATGGTGACTCCATGAGTCCCGGAGAGAGAAAACCCTTCTCTGGGACGGAGTGGACGTGTTGATCACATCTCACGCACGCAGGGTGCTTTGACAGCCCGACACTGAATGTCGAACGAAATGGGACCCCCTTACCGACTGACACGCCGCCCGCGCGAACCTCATGCGACGACCAGACGCCGGGAGGTTCGCGCAGAGTGAAAACCCGCACTGGAAGGGGATGGCGAAGAACGCTGGGTCACGCAAACGATCACCCGATCGTCATCTCCGCGGAGGTTCGCGCGACGCTACCCAAAAGTTGCGTCCAGGCCGGAGTTCAGCGAGACTGGC # Right flank : CGGGCGCTGGAAGATTGAAGTGTCTCGTGGAGAAAGAAGATCGCGCTGACGGGCGCGTCAGTGCAGGAGGCGGGTCAGGAAGGGCCGGCTCACGTCCATCACGGGCTTCGACTTCAGGCACGACACCAGGGCGCGGGTGGTCAGGTGCTCGTTCCTCGCTTCGACGGCCGCCTGCAGATGCACGGCGACCGCCGAACGCAGGACTGTGCCCGAGAAGAACGCCTGTCGGAGCAGTGCTGTGACCGGGAGGCGCTCGCGAACTTCGCCGTCCGCCGTGACGATCACGATGTCCGGCCATCCGATCTCGTCCGCCACGAGCAGGGCCCGGTAGGGTTTCCCGGCCCGGCGCGTCACGTCCTCGATGGTCGCCATGAACACCTGCACGAGGTTGAAGGTCAGGGTGCGTGCAATGAACTGCAGGCGTTCAGTGTCCGCGCCACCAAATCGCCGTGCCAGTTCGGCGGCCAGGCGATCGCCCTCGTGCAGGAGCAGGTGCTCGT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGCCCGCCTACGGGTGGGCTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-16.80,-11.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [35.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA // Array 1 81945-80159 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMOE01000007.1 Deinococcus aquiradiocola strain JCM 14371 sequence07, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 81944 37 100.0 35 ..................................... TGGTAGGAGGGACCACATGGCAGAATTACCGGCCC 81872 37 100.0 34 ..................................... ACGCCCTGCGTGACGGTGATGATGTGCGTGTCGA 81801 37 100.0 35 ..................................... TTGTACGCAGCGGCGGTGTTCGGGTCGTTCGCGCT 81729 37 100.0 36 ..................................... TTCGAGGTGGTGGACGTCGAGACGGCCACGCCCGGC 81656 37 100.0 36 ..................................... TCACCCCCACCCGCACCACCACCCGCCCCTGGTGGC 81583 37 100.0 35 ..................................... TGCAGGTGGGAGAAGCGGCCGTGTGCCGAGTCCAC 81511 37 100.0 35 ..................................... AGAAGTCGCAGGAGAAGAACAGGCAGGCGGCCATG 81439 37 100.0 35 ..................................... GGCATGAACCTCGAACAGCTGTACATGGCTGTCCT 81367 37 100.0 35 ..................................... CCATTCCGAACCTGCTGGAGGACGCGGAGGACGCG 81295 37 100.0 36 ..................................... AGGGGCATGACGGGTCGTTCACGGCCACGCTCAGCA 81222 37 100.0 36 ..................................... GTCACGAACGGCGCCTCGACCTTGCCGCGCATCATC 81149 37 100.0 36 ..................................... CACGGCCACGGCCAGCGGCACGCCCGTCGCGCCTGC 81076 37 100.0 37 ..................................... GTCGTCGGGCCTGCTTTCGCACCGGGCGTGCCGGTGT 81002 37 100.0 35 ..................................... GCCTGCGCGAACAGGATGGGGGCGGGCGGCACGAC 80930 37 100.0 35 ..................................... GCCGCGATCAGCAGCACGGGCACGCCGGGCGGGAT 80858 37 100.0 36 ..................................... GTCATCTACATGGTGCACGGGGAGAGCAACGAGGCC 80785 37 100.0 37 ..................................... CTCATCGACGCCCAGGCCCGCACCCCCACCCGACCCG 80711 37 100.0 37 ..................................... TCCACGTCCATCACCCAGTACGCCGTGCCTTCTGGGG 80637 37 100.0 36 ..................................... CTCACTTCATAGGCGTAACCGTCCGGCAGGGCGGAA 80564 37 100.0 35 ..................................... TGCAGCATCAGCTGTGCGGCGGCGAGCTGGTCGAA 80492 37 100.0 37 ..................................... TCGAACACGGGCTGCACGAGCAGCACACCTTCCACGC 80418 37 100.0 35 ..................................... GACTGAGCCTCCAGTGCGAGTCCTGCGCGTTCAGC 80346 37 100.0 37 ..................................... GCCTACCTGCTCGACGACCTGCTCGACAGCGGCTGCA 80272 37 100.0 40 ..................................... TTGAAGTTCACGAGGCTCACGTACTCGATTTCGCCGTCGC 80195 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 25 37 100.0 36 GCTGCAGGACGAACCCCAGCCGATAGGGGACAGAAAC # Left flank : TGCCCTGCTTGTCGAAGATCAATTGGGGTTGGACGTCCCGCACGGGTACTGGCACAGCAGCCGCACGCGTCAGACGCATACCATCGTGTTCGACGTTCGTCTGCGCAACCGGACCAGGCAGGCCATCTCAGCTGTCAACGCGTTCATCTCTACAGGGCGCTGTCCGGGTCCGACTTCTCAGCTGGGCAAGTGTCTGGAGTGCGAGTTGAAGAACTTCTGTGGCGATACCGTCTGACCGCAAGACACTTGCCTGCGTCAGAACCGAGGCATGTTGCGAGTCGTGGGTCACGGCATAAATGGCTATTCGATCATCCAGGGTTATGGCGTTCTGGATGGAAATCAAGAATTGACTGTCTGGGCGAGCTCGCAAATCCCCTCTTTAACACTCAGATCTGACTGCTTGCGAAGCCAGCCCAGGAAGTACACTGAATGCTGCAGCATACGCGCTGCGGGTTGTATGACAATCGAGAGGTGCCATGATGAACACGGCCAAATAAGCC # Right flank : CCNNNNNNNNNNCGGCTCGGAGTTTCTGCGGAACGTGTGGCGGTGGGATCTGAAGGAGAAAGCGGAGGTGATCGGGGTCATGATGAGCCCTTTTTTAGCTCCTGGAGCAGCTTGAGTTGAAGTTGTCCTCTACAGAGTTAATCACCAGACAAACGCACGAAAATGGATGATGAGAGGCATCTTCGTGCGTTCAATTTTTACTTTCCGAGCTCAAATTGCGATCTGTACATATTTTTTTCTCGTATCATTTTGCTTTACTCATTAATGAGATTCGCTTCCTACACTGTCCAGCAACTGCGAAGGTGTGATTTTAAATGCTTTGGCGATCTTTACTAAAGTCGTTAGTTGAATATCCACTATCCCAGATTCAATTTTATGCGGATATGAACGGCCGAGTTGCGTCATCTGTGCGAACACGTCTTGGCTCCATCCACGGTCCTCGCGCAATCGCCTTATCCTGAGCCCAAGCTGGAGCCGAATGTCCACGGACCCGATACTTT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGCAGGACGAACCCCAGCCGATAGGGGACAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 2 131820-130491 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMOE01000007.1 Deinococcus aquiradiocola strain JCM 14371 sequence07, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ========================================== ================== 131819 34 100.0 33 .................................. GACTGAGCGTCTGCGTGGCGTACACCTCGCTGT 131752 34 100.0 32 .................................. GGTGGCGGGCGTGGGGAAGAAAGCGGTCGGGT 131686 34 100.0 34 .................................. GTCCGCGAGCTGGCGAAGCGCGGCACGCCCAACG 131618 34 100.0 33 .................................. ACCGTGGTTTCCGCCATACGCACCATGTCCTCA 131551 34 100.0 36 .................................. TTGATGGTGGCGAAGCGGTAGAAGCTCCAGGTGCTG 131481 34 100.0 34 .................................. TCGTCTGCGCTGGCGCAGACATCTTGGATTGCTC 131413 34 100.0 34 .................................. AGTTCCCAGCCCTGCTCCTCGGCGTACTTCAGGA 131345 34 100.0 33 .................................. AGCAGAGGTAAAGCTAGCGGTATTAGTGCAGGC 131278 34 100.0 33 .................................. CCACCTCGCGGTAGTGCGCCTTCTCCCCCTCCT 131211 34 100.0 32 .................................. TGGCGGTGGCCAGGCCAATGACGTACTGGTGA 131145 34 100.0 36 .................................. CTCCGGCGGGCCGGACCGCCCATGTGGTTGGCGAGG 131075 34 100.0 35 .................................. ACGGTGCTGGTGGTGCAACCGCTGTTCACCACCAC 131006 34 100.0 33 .................................. CAGATGCCGGGGAATTATCGCTCAATGCTCCAC 130939 34 97.1 32 ...................T.............. ATCTCATCCGCGCTCATGACGCGGTTGACGAT 130873 34 97.1 33 ...................T.............. TTCGCTGTAATAGCCGTTGCTGTGCCCGCACCA 130806 34 100.0 35 .................................. CTCCACAACGCGGTAGGTCTGGACCTCTGCCTGCC 130737 34 100.0 34 .................................. TGGTGGCTGCGGCGGGCGTGGACGCTTTCGGCTG 130669 34 100.0 35 .................................. TAGTCGCTCCACTTGGTCCATTCGTCCACCGGGGC 130600 34 100.0 42 .................................. TTCTGACCGGCGGTCGCCGCGATGCGGTTCTTCGCGCTGGCG 130524 34 97.1 0 ....T............................. | ========== ====== ====== ====== ================================== ========================================== ================== 20 34 99.6 34 GTCACAGGCCATCTCCCTGCTAAGGGACTGAAAC # Left flank : GGCAGGAACGCCGCGCCCGGGAAGTGTTCTACCAGGCCCTGACCGACCTGCGCGCCGCCGCACGGGCCCACGACTGATCCAGAACCTCATGGGATCCTGGCTGGCCAGCCAGGATCCCATGACGCCGCCAGCTGACCCCACGGCCCCGACAGGATGCCCGGACCTGCTGCGGTGACGGGATCGTCGTGCGACCCGGGGGGTGTGGTGCGGTTGCGGCTGGAAGGAGTTCGTCCGGGGCCACGGGTGGTGCACGACGACGTGCATACGATTCCTGCACCGGGTACAAAACGAGGCCTGCGGGCTGACCTGGAGGGCGTGCAGGGCAGGTGAGCGGGAGGCGTGGGGTGGGCGATCATCGTGCATGCCGTCCCAGCGCGGGAAAAACAGGGTAGAGTGAGGGTGTTCGAGGTCCTGAACCGCGACATCGGTGCATACCGGGTATGCAATGTGATGAGAGGGGATCAGGAAGAGCGTGCAGCATGACAGTTTCCAGCGGGTCC # Right flank : ATCGGGCGCGCGGTAGGAGAGGCAGAACTCCCCCACTTCACACCCGAGCTCAACGCGTTTCGGAGGGGTCGTGTCGACATCGACACGAGTTCTTCAGGACATCTGCTGGCCTTCAGAATCCCGCTTCTGCTTCACTGCAACAGGCCTTCAAGCCGTTTCAGAAGCTTCTCGACCTGAGCCTGGTCGGCGCGTGTCAGCTGACGCCGGTCCAACTGTCGTCCCAGCCCCTGGAGCCGGTCCAGGTAGCCTCTCTGGGGTTCACGTTCCTCCGCGGCCCAGGCCACGAGGTCCTGTCTCGAACGCCACGGGCCGGCTGGCGCACCCAGGAAAGCCAGGGCAGCAGTGTGACGGTCTTCAGGGAGACGTTGGACAGCCAGGGCGAGCGAGTAGGGCATGCCCGCCCGGACCGCCTTCTGGAGTGCTGCAGGAAGGCTGTAGACCCGCATCCTGTTGGTGTAGAAGGACAGCCATGGCATGCCGGTCACCTCCTGGATCAGGCG # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACAGGCCATCTCCCTGCTAAGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.90,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 3 152867-151668 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMOE01000007.1 Deinococcus aquiradiocola strain JCM 14371 sequence07, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ============================================= ================== 152866 34 100.0 34 .................................. AGACCGGACCGTGCGGTCGTCCACCAGCGCGGCG 152798 34 100.0 35 .................................. CGGATGAGGTTGCCGCTGAGCATCCGGTTCCGGGC 152729 34 100.0 33 .................................. TCGAGGTGCGCGCCAGTCGCACGCTGTAACTGG 152662 34 100.0 36 .................................. CCGAGGATCAGGCCCTGCACGGTCAGGGCGAGCGTC 152592 34 97.1 34 ..................A............... CGCTGGATCTCCCAGTACAGCTCTCGCTGTCCGG 152524 34 100.0 33 .................................. CGAGCGAGACGGTGTACCGCTGCGCGTCGACTT 152457 34 100.0 34 .................................. GGGCGGTGGAAGTTTGTTCGATCATCTGGAGGAT 152389 34 100.0 35 .................................. ACGACCTGGAGGCGCACGGCCTCCAGCTGGTCGAA 152320 34 100.0 32 .................................. TCAAAGGTGTACCTGTCAGGCTGTCCCATGAG 152254 34 100.0 33 .................................. CACTCGAGTGCGAGGAAGGTATCGAGTGACTCG 152187 34 100.0 45 .................................. GTTTGGGGTTTGCCATCTCCACGCGCTTACGGCGCACGTGAGCGA 152108 34 100.0 33 .................................. ATCTGCGCGTTCACCCGCCGAAGGGCCTCCAGT 152041 34 100.0 34 .................................. GGTTACTTCTGCTCTTCGTGGAAGTTGTACAGCA 151973 34 100.0 37 .................................. ATAGGGTTGTCTCTCCTGTGCCGCAGCGGGTGCGGGG 151902 34 100.0 33 .................................. TTCGGGTTCTGATCGTTGTAATGACGCTGATTC 151835 34 97.1 33 .........................A........ AAAGTGTCTGGAGGCGTCGTATTCTTTTACGGC 151768 34 100.0 33 .................................. TTCCTGAAGCTGGGCGAGCATGTGGGTGAGCTG 151701 34 97.1 0 .............C.................... | ========== ====== ====== ====== ================================== ============================================= ================== 18 34 99.5 35 GTCACAGGCCATCTCCCTGCTAAGGGACTGAAAC # Left flank : CGTCCGCCTGAACGCCGACGGACGCCGGCGCTTCCTGACCGAACTGAATGCCCGCCTGAGCGCCCCCGTCGGCCGGACCGGCCCCACGTACCGCGACCTGCTGACCCGCAACGTGCGCCGGTACGCCGAAGCCGTCCGTGCCGGACGCGTGTACACGCCGGACCTGCTGCGGTGACGGGATCGTCGTGCGACCCGGGGCGTGTGGTGCGGTTGCGGCTGGAAGGAGTTCGTCCGGGACCACGGGTGGTGCACGACGACGTGCATACGATTCCTGCACCGGGTGCAAAACGAGGCCTGCGGGCTGACCTGGAGGGCGTGCAGGGCAGGTGAGCGGGAGGCGTGGGGTGGGCGATCATCGTGCATGCCGTCCCAGCGCGGGAAAAACAGGGTAGAGTGAGGGTGTTCGAGGTCCTGAGCCGCGACATCGGTGCATACTGGGTATGCAATGTGATGAGAGGGGGTCAGGACGAGCGTGCAGCATGACAGTTTCCAGAGGGTCC # Right flank : GATCGGCAGGTCGCTGCCGTGGGTGTCGAGTGGTCACAGGTCATCTCCCTGTGGCCGGGTCCTGGTGAGGCCTTCCCCGCCCGTGATGGTGCAGGTGTGGCGCGCGGAGGGCGTCTGCCGGGACAGAATGCGGTGCTGACCGTTCGTGGTGCGGCGGGTGTTCACCTACAGGTGGACCGCAGGCGGGTCCAAGGAGGGAGTGCGTTGATTCTTTCGTTTCTGGGTGCCGGGAGTTATTTGAGTACGTCGTACCGTTGGGGGGATCATCCTGCGGTCACGACGCCGTTGTTCGTGGCGGCGGTGTCGGCATGGTTCCCTGAGGAGGAGGTCGTGGTGCTGTGTTCCCCGAAGGCGCGTGAGCGCAATGCGGGAGTGCTGCGGGAGGCGTTGCCGAACGCGAGGCTGGTGGAGATCCCGAACGGGGAGACGGACGAGGAGAACTGGGACCTGTTTCAGATCATCAGTGAGACGGTGCCGGAGGGGGAGCGCGTCGTGTTCGA # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACAGGCCATCTCCCTGCTAAGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.90,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 4 157406-158318 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMOE01000007.1 Deinococcus aquiradiocola strain JCM 14371 sequence07, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ===================================== ================== 157406 34 100.0 33 .................................. GGTGCGCCTGGAACTGGAGGTCGAGACGAACGG 157473 34 100.0 34 .................................. TGTCCCCCAAGATCAATAGGCGGTCCTTGCCGGA 157541 34 100.0 35 .................................. ACGGTCAATCAAGGAGGAGAGCAACGCACTAGGAA 157610 34 100.0 33 .................................. AGGTCCCCCGTGACGACCGCGCGGCCAACCACG 157677 34 100.0 35 .................................. TTCCCTGTGGAACTTCAGGCGAGCCCGGAAGTCTG 157746 34 100.0 35 .................................. GCGCCCCTTCATGCCTGCGCCTCGGCGTGGGCGGT 157815 34 100.0 32 .................................. CGGACGTGCGGCTCGGTCGGGGCGATGAACGG 157881 34 100.0 34 .................................. GTCCGGCAAACCCACCAGCGCACCGAACTGGGTG 157949 34 100.0 36 .................................. CCGTAATGCGGGCAACCCTCGTTGTCCACGACGGGG 158019 34 100.0 34 .................................. TGAGGGCGGCGGCCAGCTGTCCGAGCGTCTCGCT 158087 34 97.1 33 .............C.................... GGGTCAGCCGACGTTGCGCAGCGGCCGCTGCGA 158154 33 85.3 27 .......................-.C..C.T.C. CAAGACTCAGACCGCCGCGCTCGGCAG Deletion [158214] 158214 34 100.0 37 .................................. GCAGGACGAACATCAATTTTCCGGGTGTGCGGAACAC 158285 34 100.0 0 .................................. | ========== ====== ====== ====== ================================== ===================================== ================== 14 34 98.7 34 GTCACAGGCCATCTCCCTGCTAAGGGACTGAAAC # Left flank : TGCTTCGTGCTGTGGAGCGCCGGCCTTGCCGCCAGTCTGTACTTCGCCGTGCTGTACCGTCACTTCCCGTTCCGCACCCCGGCCGTGCCCAGCCTGCAGGAACGGCGTGCCATTGCGGCGGCCCTGCTTTGGCTCGCCTTCCTCGGCGTCCCGGCACAGCTCTGGCCGACACCCACCATTCCGTCGTGCGACCTGGGGCGTGTGGTGCGGTTGCGGCTGGAAGGAGTTCGTCCGGGACCACGGGTGATGCACGACGACGTGCATACGATTCCTGCACCGGGTGCAAAACGAGGCCTGCGGGCTGACCTGGAGGGCGTGCAGGGCAGGTGAGCGGGAGGCGTGGGGTGGGCGATCATCGTGCATGCCGTCCCAGCGCGGGAAAAACAGGGTAGAGTGAGGGTGTTCGAGGTCCTGAACCGCGACATCGGTGCATACTGGGTATGCAGTGTGATGAGAGGGAGTCAGGAAGAGCGTGCAGCATGACAGTTTCCAGCGGGTCC # Right flank : CCCATGGGCGAGAACGGCGGAACGGATCCCAGCAGTCACAGGCCATCAAACTGTACTCATTGATGCTCGTTTCGCTCAGCTCCACATCAAGAATCCAGTTCATCACCGTGAGATGACTCTCCTGGACGCCAAGTGCTGTCGCCAGCCGATCTGAATGCAGTGGATCGTGATAGATGACCTGAACGGTTTCCGCAAGCCTCTACTGAGCGTCGATGCGGCTCATTCAGACCAGTTCGCCCTGGACCCGCTGGCAACGTAGCCGGAGAAGGCCCGGAGGCGCTGCGGTCCCTCGGGTTCGTGACTGGTCTTCTCTGGCGCTTTTGACTTTGCTGGAACAACAGAGGCTGAACGCGGCGGCGCGGCAACTTTCAACTGCGGTCCATAGCTCATGGAGGCCTGTGGCGCGGGAATCGGGCAAGCGGGCGACTTGAGAGTCGCCCGCTTGCCCGATTCCATCATCAGGACATAGGTGGGATTGGTCGTCGCTGGAAGGTCGCAGA # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACAGGCCATCTCCCTGCTAAGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.20,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA //