Array 1 1-1523 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLIV01000243.1 Acinetobacter baumannii strain ABOB04_b contig-3000067, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1 28 100.0 32 ............................ AACAATTGCCTGACTGGTATGAAGAACCAGTA 61 28 100.0 32 ............................ AACAATTGCCTGACTGGTATGAAGAACCAGTA 121 28 100.0 32 ............................ AATGTACTTTAATTTCCACTCGACACCAGTTC 181 28 100.0 32 ............................ CATGACCGAAACAGCCAAAAAGGTTTTATGTA 241 28 100.0 32 ............................ TAAAGGATAGTTAGCTGTAGGCCCTGCGGTTT 301 28 100.0 32 ............................ TTATAGTTATGTGTGTGATATCGTTAAGCTGC 361 28 100.0 32 ............................ TAGCACAATCCAAACCTCAATAAAAAGTAAGA 421 28 100.0 32 ............................ GAGCCAATAAGATCGCGAAGTATGCGGAAATC 481 28 100.0 32 ............................ ACAGAGAAAACCCCACATGTTCGAGGGACTGC 541 28 100.0 32 ............................ ATAATTCCGCCATCCTCGGCTGAGATATGGGT 601 28 100.0 32 ............................ TGCCGGAGCGGTCTTGTCATTGGCGAACCCGC 661 28 100.0 32 ............................ TATGCGATTTGATAATTAAATTGCGATACTGG 721 28 100.0 32 ............................ GAAATAAAAAACACCTGATGAAAACAGTTCAC 781 28 100.0 32 ............................ ATAATCACGAATATCACCAGTAAACCAGTGAT 841 28 100.0 32 ............................ TTATTGGTCCTGGTCAGTGGAATGGTGATTCT 901 28 100.0 32 ............................ TGGGTAAAAGCCGATGGATTAATCATCTTTTG 961 28 100.0 32 ............................ ATTAACAAGAGTGGAATTTATTGAACTATTAA 1021 28 100.0 32 ............................ TCTGGGTTCTTTTCGCGTGTATGGGATACTTG 1081 28 100.0 32 ............................ TGTAAAGTCATTCGTAATAACCGTTATACGGC 1141 28 100.0 32 ............................ AAAACCAATCAAATAACGGTTATGTGGCCACA 1201 28 100.0 32 ............................ CATAGCGACATATAGTTTTGCCCGGATCTGAT 1261 28 96.4 32 ..................A......... TGTTTCGCGTTGAGGTCCGGGTAATCGCCTAT 1321 28 78.6 27 ....C.....CTCC..........T... GTCTTGTATCCTGATTTCAAAGATTCA 1376 28 92.9 32 ....C....T.................. ATATCACGCGCCATTGCAAGTTTTCTACCGAT 1436 28 89.3 33 ...A........CC.............. TGATCTTTAAGATTAAGCATCCGTTCTGTTTTT 1497 27 85.7 0 ...TG.......C...........-... | ========== ====== ====== ====== ============================ ================================= ================== 26 28 97.8 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : | # Right flank : AGAGTTTCTTTCAAAATTTAAGACGACGTATTTTGTCGTTAAAAGGTTGTATTAAGCTGATAAAAACTTTCTCTTTTTAAAACAAAAGATTATATTTTTATGATATTTAAACTTTAACAATAAACTATGCATGTCATTTTCATCTCGGCTTGTGAAAAAAGAGCTTTAAAGAAAACTCGAGCAATTTTGGATAGCTATGCTATTCGTACAGGACATTCGTCTTGGCAAGCACCAATGACAATGGACGGCTTAAAAGAAATTCGTAGTGCATTAAAAAAAGTAGCTACCCGACAAACTGCGGTGGCCGCTTACATTAATTTTGGTGTACGCAGAATGAAGCTTGCATGGGTTGTGGGAGCAAAACATAAATTTGCACACGATGGTGCATACCCAGTTGCATCGACTAAGAAACAGCAAAAGTTACTCATGCTTGATGAGTGGGTCAAAGTAAGTAGCTTGTTGGCAGGTGCAGCAGGAGACATGCATGATATTGGTAAGGC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 751-3 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLIV01000404.1 Acinetobacter baumannii strain ABOB04_b contig-6000022, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 750 28 100.0 32 ............................ AAGAACTGTGCGTCTTGGCGGTGGGAAAATCA 690 28 100.0 32 ............................ ACTCCATAATTGCAGGTGTTGAAAGCTCACCG 630 28 100.0 32 ............................ TTCTTGATCATCGTTATGTAAAAACCATTCCA 570 28 100.0 32 ............................ AAGAAAAGTATGAACAGCAACTTATAGAAAAA 510 28 100.0 32 ............................ GATGACCGTACCAACTGGATTTTGATATTCAT 450 28 100.0 32 ............................ TTGTTGTGTATATAGGTTTTGCAGCTCATCTA 390 28 100.0 32 ............................ ATCATCGTAAGCATTGAATCGCGTGCCTTCAA 330 28 100.0 32 ............................ AATGAGAAGAAAGTGGTTGCTATCGACTTCTT 270 28 100.0 32 ............................ AATATGCTCGAATGAATTCCTTGTAGCATTCT 210 28 100.0 32 ............................ AAGAACTGTGCGTCTTGGCGGTGGGAAAATCA 150 28 100.0 32 ............................ ACTCCATAATTGCAGGTGTTGAAAGCTCACCG 90 28 100.0 32 ............................ TTCTTGATCATCGTTATGTAAAAACCATTCCA 30 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 13 28 100.0 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : | # Right flank : AAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [3.3-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 28275-22785 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLIV01000068.1 Acinetobacter baumannii strain ABOB04_b contig-1000059, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 28274 28 100.0 32 ............................ TTCTTCTCTCTGATTACAAGCTCCCTGGGGCA 28214 28 100.0 32 ............................ ATAAGGACGATGCAAGTGATAGTGCTCACCGA 28154 28 100.0 32 ............................ ATGCAGATAAAACAGTAAAACTCTATGAAAGC 28094 28 100.0 32 ............................ ACTGGTTAATTTTAATAATGCGGATGGATATT 28034 28 100.0 32 ............................ TCTTAATCTCTTCAATGTTCATCTTCAACCCT 27974 28 100.0 32 ............................ AAAACGTTGAACATTAGTAAGTGTTAGAACAC 27914 28 100.0 32 ............................ TTACGATGGCCAACAGAAATATTAGACATATA 27854 28 100.0 32 ............................ GATAAAGGTTGTATGCGCTCTAAAGCGTTAGT 27794 28 100.0 32 ............................ AATCCAAACAGCAAAACCGATGATACCTGCAA 27734 28 100.0 32 ............................ AGTGGGCTTATATCTCTTCTATAAAAAACGGA 27674 28 100.0 32 ............................ AATGCTGCTGTTGACGTGGCTGGTCCAGTTGC 27614 28 100.0 32 ............................ GGAGTCAGGCACACTATTAGATAGCAGTGTGC 27554 28 100.0 32 ............................ ATGATGAACCTGTCTTACCTTCAGATCCTTCT 27494 28 100.0 32 ............................ AAGCATTTCAGTTGCACCAAGATGAATACTTT 27434 28 100.0 32 ............................ TCAAGTGCAGATGCAGCCTAATTATTCTTCTT 27374 28 100.0 32 ............................ AAGAACGTTTGGCAGCAAAAGGAACATTACCA 27314 28 100.0 32 ............................ TTATTGTGAGCACCTTGATTGCTGTGCGCTGC 27254 28 100.0 32 ............................ TACAGCGGGAAACTTGAAAGTCATTGCGAAAT 27194 28 100.0 32 ............................ TGATTGCCCCCTGAGGAAACTGTATAAAGTCC 27134 28 100.0 32 ............................ AAACACCAACTAAGCCATTCCCTATTCAAAAA 27074 28 100.0 32 ............................ ATGAACTTTTAATGGATGCATGCGCCGCCCAC 27014 28 100.0 32 ............................ ACGAACAACGATAATTTGGAATACACGCTCAT 26954 28 100.0 32 ............................ TCAGGAGAAAGATCGTTCAAAAGCTCAAAACC 26894 28 100.0 32 ............................ TGAAAGTTTTGATATCCACTCTGCTGTTTCAA 26834 28 100.0 32 ............................ AGATGGTAAGAAAATTATTGAGTCTGGAGACA 26774 28 100.0 32 ............................ CGACAGTCCAGTTGATCAGATCTTGATTAGAC 26714 28 100.0 32 ............................ AATGACATGGTTCAACAATTAAATTCATCTCA 26654 28 100.0 32 ............................ GTTCTTTTCTGCAATATGTGCCATTAGGTATT 26594 28 100.0 32 ............................ ATTTTAGATGAAACAAAAGATAGCAGGATTAT 26534 28 100.0 32 ............................ AGACCAAGCGGATTGACCGTATTGATAAATAA 26474 28 100.0 32 ............................ TTCTGCAATACAAATCACTGGATCAGCCAGGT 26414 28 100.0 32 ............................ TGAGTCTTTGATTTCCCAAATATTACTTGAAA 26354 28 100.0 34 ............................ CCTGAAAAATTTCACTGTGTCCATTTCGTTATTA 26292 28 100.0 32 ............................ TATGTCTTTAAATTCTGAAAAAACACTTGTTC 26232 28 100.0 32 ............................ GAAAAAATTGAAAACTTTTTAGAAGTAAATGA 26172 28 100.0 32 ............................ GCCACACATGCCTAAAAACGCAAGTGCGCTCG 26112 28 100.0 32 ............................ ATTATCAGATAAGCCTTTTATGAATGATCGTT 26052 28 100.0 32 ............................ ATTAGCTATTAGCTTTTTGGCAACAACAACAG 25992 28 100.0 32 ............................ AGTTCATGAAAACAGCTTTAAAAAGAAAGCAC 25932 28 100.0 32 ............................ TCCGAAGGTAGTGAAGCTGTGTGTGAATTTAC 25872 28 100.0 32 ............................ TTGCAAGCTCGTCTAGCTAAAGTAGACCCTAA 25812 28 100.0 32 ............................ TGGTACGACAACTACGAAAAGCTGAGCAAAGT 25752 28 100.0 32 ............................ TCAACTTAAATGGATGCTCCCCGCGGTGAATT 25692 28 100.0 32 ............................ TTGATTGCTAGACGGATTTTTAGGCAGATCAT 25632 28 100.0 32 ............................ GAGTTTAATGCGCTATATGGCGACGAGGATTT 25572 28 100.0 32 ............................ CATGCAATCGCGTTGATTACCGCAGCTTCGAA 25512 28 100.0 32 ............................ ATGAGCCGCAACCATACGGTCTATGACTTCCA 25452 28 100.0 32 ............................ ATAGCGCCCTGCTCTATGTTGTCACTTCCGAA 25392 28 100.0 32 ............................ TCCAAGTGAATCGGCTCCTAATGCAAATGACC 25332 28 100.0 32 ............................ TGAAAACCAATATGCTGCCTAATTGCCATAAG 25272 28 96.4 32 ....A....................... GATCTGCGTCCATTTGTACTTGCTGCGGGTGC 25212 28 89.3 32 ....T.......AT.............. ATATACAGCACCGCTTAGTGCGACGCGGTCAT 25152 28 89.3 32 ....T.......AT.............. GCCCACAGGTTGAGCATCAACGGCCATCGAGA 25092 28 89.3 32 ....T.......AT.............. ATCATAGAGCTCACTTTGTCGTTGAGCCTGCA 25032 28 89.3 32 ....T.......AT.............. AGAAGGCCCGTAATTTAACTGTAAGCCGTGGT 24972 28 89.3 32 ....T.......AT.............. TCTTCCTGAGTTTTAATCCCATTTGCCTTACA 24912 28 85.7 32 ....T.T.....AT.............. CATCTTCGCCAATTGCTTTTGGAGAGTTGCTA 24852 28 89.3 32 ....T.......AT.............. TTCAGGGAATTATCGTGAAACTTTCATTGACT 24792 28 89.3 32 ....T.......AT.............. TGCACCAGCTGCTGGCTGGTTGAAATCTGCAA 24732 28 89.3 32 ....T.......AT.............. AGAAGGTGCAGAGTTTTGGGACTTTGGGTGGT 24672 28 89.3 32 ....T.......AT.............. TGTTTCAAAAGCTACACCATCAAAACCATTGC 24612 28 89.3 32 ....T.......AT.............. TATTTAAGTAATAAGTTTAATAACGACCTAGT 24552 28 89.3 32 ....T.......AT.............. AACACGTTCTCTATATCGCTGTTTGCGGTCAT 24492 28 89.3 32 ....T.......AT.............. TTCAGTTGGATATGCCTTTGATACCAAGAAAC 24432 28 89.3 32 ....T.......AT.............. GCCTGCAGACACGGATTTACGCAGCTGATCGA 24372 28 85.7 32 ....T.......AT...........C.. TAACCAAACTATGTCATCGATCGGAGATTTCA 24312 28 89.3 32 ....T.......AT.............. TTAAAATAAATGCCTGTGGTTTTTTCTTAACT 24252 28 89.3 32 ....T.......AT.............. AGTTTCCGAAGTTGAATTACACTCGCCAAGTT 24192 28 89.3 32 ....T.......AT.............. TAACACAGTGATTTGATTACCTTGAGCAACCC 24132 28 89.3 32 ....T.......AT.............. ATCTTGATGCCGAGGTCTTTAGCTTCTTGAGA 24072 28 89.3 32 ....T.......AT.............. TCATCCACCTTTGATGAAACGGATCCACGCAA 24012 28 89.3 32 ....T.......AT.............. TCTTGTGTGACGGCCTCCACTCCAGATCCCGC 23952 28 89.3 32 ....T.......AT.............. TTAAGCTTCAAAAATAGCCATTGATTATAAAA 23892 28 89.3 32 ....T.......AT.............. TGACAACTTTCCACGGCAATCAGGGCTTTCCA 23832 28 89.3 32 ....T.......AT.............. TAAAGATGCACGTGGCCTAATGCAAGTTATTC 23772 28 89.3 32 ....T.......AT.............. TTTAAAATTAGGTGCTGAGTTACCACGGCTCA 23712 28 89.3 32 ....T.......AT.............. TAAACCAAGAACTTGAAGATTTTGATGCTTAT 23652 28 89.3 32 ....T.......AT.............. TAAAAATAGTGTGTTAATTATTTATGATGAAA 23592 28 89.3 32 ....T.......AT.............. CGTATACATGCACATCAATACGATATCCCGAT 23532 28 89.3 32 ....T.......AT.............. ATACTATTATAATGATCTAAACCCATTACAAC 23472 28 89.3 32 ....T.......AT.............. TGCAGCTACTCGACATGTTGGTAGGGCAGATG 23412 28 89.3 32 ....T.......AT.............. CAGTCGGCTGGTGCTAATTGAATAAAATCGTT 23352 28 89.3 32 ....T.......AT.............. AGATTGAGGCGATTTTTATCGCGGACATTGCC 23292 28 89.3 32 ....T.......AT.............. CAGTCCCCGCTTTGAAGCATTCCCATCAGTAC 23232 28 89.3 32 ....T.......AT.............. TCACAGCTATCGTCTGGCTGCCGTCGCGTAGA 23172 28 85.7 32 A...T.......AT.............. TTATTATTAAACGGGAAAAGTATATTCTTGCT 23112 28 89.3 32 ....T.......AT.............. ATACTATTATAATGATCTAAACCCATTACAAC 23052 28 89.3 32 ....T.......AT.............. ATCATCAATAAGTTGGCCTTGATTTAAATAGT 22992 28 89.3 32 ....T.......AT.............. AGATACAAACGAGTTCGCATCTCGACCAGAAG 22932 28 89.3 32 ....T.......AT.............. ATTATCCAGATAAAACCATATCTACAAAGTGG 22872 28 89.3 32 ....T.......AT.............. TCAACCTGAACACAGACATACATGTTCTATTG 22812 28 78.6 0 ...GC.......AT..........AT.. | ========== ====== ====== ====== ============================ ================================== ================== 92 28 95.0 32 GTTCGTCATCGCCCAGATGATTTAGAAA # Left flank : ACGTTGGGCCAAAACGCTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAGTTTATTCGTGATGAAGGCAAAAACTCTCATGACTCTATTGCGGATATAGCCAACAGCTACCTTGATCATGGAAACTATATTGCCTATGGCTATGCAGCAGTTGCTTTAAATGGGATGGGAATTAGCTTTGCCCTCCCTATTTTGCACGGTAAAACACGTCGTGGAGGTCTAGTCTTTGACCTAGCTGATCTAGTTAAAGATGCTTTTGTAATGCCACTCGCTTTTACATGTGCAGCAAGAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACTTTTAACCCAAGTACCTCATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : TTTGAATCTTAAAAAGAGAAAACCCCGAAACTTTCGTTTCAGGGCTTTTCACGAATCTTGGTGGAGATGGCGGGAGTTGAACCCGCGTCCGCCAGCACTACGCTCGAGAATACTACATGCTTAGATATCGTCTATTGTTTTAACACCAAGTGACCCGACGAACAGGGTACAAGGTGCGATCCTCTAAGTTTGGTATAAAGCCCCGAGGCTTGACTCTATACGGACTTGTGTGCGTGCGCTTCAGTCGGGTTCCCAGACCACAAGTATTCTAGGAAGCGGACAAGCGGCCCTTAGGCAGCTAGAGCGTAAGTTTCGTCGTTTGCGACTATTTAAATGCAAATTTTATTTACGAGAGAAAATGCGCTCTCGGCATGCATCTATGAGTTTCATCACCGGCGTCGAAGCCAATAACATCCCCATGAATGTCTGCACATCATAGCATAACTAAAATAAAATGCTGTGCATTTTATCAACAGTCTGCCACTGATGAACATACTTAC # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGTCATCGCCCAGATGATTTAGAAA # Alternate repeat : GTTCTTCATCGCATAGATGATTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCGTCATCGCCCAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //