Array 1 7087-7914 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOBM01000009.1 Streptococcus gallolyticus strain VTM1R29, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 7087 36 100.0 30 .................................... CATTACATGGTGGCGCTTGGACTGACTGGA 7153 36 100.0 30 .................................... AGCTTCTGGAAGTCGTCTTGTCCGTAGAAA 7219 36 100.0 30 .................................... CCAGACCGTATTTCGTTTCAAAGTGGTGGT 7285 36 100.0 30 .................................... AGACTATCATTGGTGTTGGTGAGTTAGGTC 7351 36 100.0 30 .................................... CTACATACCTCAAAATAGAGGTGTTGACGT 7417 36 100.0 30 .................................... ACAGACAAATTACAAACGTGGCGATTGCAA 7483 36 100.0 30 .................................... ATCCAAAAGACTTTCATATCCGTTCTACAT 7549 36 100.0 30 .................................... TTTTATCAGTCCATTCAGTGATGATGTCTC 7615 36 100.0 30 .................................... CTTGTCTAAACGTGACGAGTGCATATCTAA 7681 36 100.0 30 .................................... GCAATTTTTTGCTAGTTGCTGCTTTGTCGT 7747 36 100.0 30 .................................... ATACCATGAAGCAATACCGCAATGTATTGC 7813 36 100.0 30 .................................... ACAAATTGAAGAGTATGAAGCGCTCTTAGA 7879 36 97.2 0 ..........................A......... | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 99.8 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : ATCCAGCAATTTTTCACAAAGAAGATGATGGAAGTTTTTGGGTAGAATTTCTAGGATTTGGTGGTGGTACCGAAGGTGATGACGTCGAAGAAGCGATGAAAAATGCTTGAGAAATGTTAGAAAGCTCATTGGATGCTTATTTAGATGAGGGGGTAGAGCTTCCAAAAGTTGTTGATATGAGTGAATTATCAGTTGAAGATGGTTTTATTACTTTAATTCAAGCAGACCCTTCCCCATATTTAAAAAGTACCAAAGCCATTCGAAAAAATGTTACGGTTCCAGAATGGTTAGTCAGATTAGCTGATAGGGAACATGTTAATTATTCAGAAGTTTTGACGCAAGCTTTAGAGAAAAAATTACAGCTTTAAATTGCTATAAACGTTGTAAAATCAAGCTTTTTGAGGTATAATATAGTTTAAAATAACGAACCATTCGAGGCTGAAGTCTAGCTGAGACGAATGGCGCGATTACGAAATTTCGTGAGAAAAATGGTCCACGAG # Right flank : CTCTGGTATTTAGGATTTAGCAGGAATAGAATGCCATGAAACTTACTAAAGTTTTAGTGGAAACGCCTTTCAATATTTTTCAAAAGTTTTCTTTTATGGTAAAATAAAAACTGAATTTATTTAGATAGGTTGGATTGTTTACATGGAAAAAACTTTCTTTATGATTAAACCAGATGGTGTGAGACGCGGGCTTGTTGGTGAGGTGCTTCACCGTATTGAACGACGTGGTTTTACAATTGAAAAATTGGAAATGCGTATGGCAACTCCAGAATTATTAGAAAAACATTATGCTGATTTGGTTGACCGCCCATTTTTCCCACTAATCGTTGATTTTATGACAAGTGGTCCAGTAATTACTGGTGTTATGTCTGGAAATGAAGTCATCACTTCATGGCGTACGATGATGGGAGCGACAAATCCTAAAGAAGCTCTTCCAGGAACAATCCGCGGAGATTATGCTCAAGCACCAGACGAAGGTGGCGCAACATTTAATATTGTTC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 9020-9187 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOBM01000009.1 Streptococcus gallolyticus strain VTM1R29, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 9020 36 100.0 30 .................................... TGGGTATTAGGCTAGGAATTAGAAATAAAA 9086 35 94.4 31 ..............C......-.............. CATAATTGATTTTTAAGCTCTGTCTCCATAT 9152 36 63.9 0 ..............C.....ATTT.A.CAT.TT.TG | ========== ====== ====== ====== ==================================== =============================== ================== 3 36 86.1 31 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : CGATTACGAAATTTCGTGAGAAAAATGGTCCACGAGGTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT # Right flank : GATGCTTTTTTCTTTTCTTGAAATGACTTCTAAAACTTTTTATAGCAACGTTTCTGTTTATCTGTTATAATAGAAACAATGATTAATTGTATAGGATTGTAAGATGGATATTCAAGAATTAAAAAAACGACAAGAGAAGATTCGTAATTTCTCTATCATTGCACATATTGACCACGGGAAGTCAACTTTGGCTGACCGTATTTTGGAAAAAACAGAGACGGTTTCTAGTCGTGAAATGCAAGCTCAACTCTTGGATAGCATGGATTTGGAGCGTGAGCGTGGTATCACGATTAAGCTTAATGCGATTGAGTTGAACTACACGGCTAAAGACGGTGAAACCTACATTTTCCACTTGATTGACACCCCAGGGCACGTTGACTTTTCATATGAAGTGTCACGTTCTTTGGCGGCTTGTGAGGGGGCAATTTTGGTTGTCGATGCGGCACAAGGTATCGAAGCTCAAACCCTTGCCAATGTTTACCTAGCCCTTGATAATGATT # Questionable array : NO Score: 3.47 # Score Detail : 1:0, 2:3, 3:0, 4:0.30, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.30,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [1.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //