Array 1 9855-10745 **** Predicted by CRISPRDetect 2.4 *** >NZ_MKIO01000017.1 Rhizobium rhizosphaerae strain MH17 C851, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 9855 33 97.0 32 A................................ GCTTCGACGGTGCGCCCCGATGCGCTCGGGTG 9920 33 100.0 33 ................................. TTCGCCCACCACATCGAGGCCATCGGCGCCGTG 9986 33 97.0 33 C................................ TTCATCAGGTCATCGGCGGTGACTGGCGACGGA 10052 33 100.0 33 ................................. GCCGCTGACCGTTTTGACTGACACGACATAATC 10118 33 100.0 33 ................................. TTTCCTGACGAAATCGGGAAGGCAAGGCCGTAA 10184 33 100.0 33 ................................. CCATTACCACATATACGGGAATAATCGACATAA 10250 33 100.0 32 ................................. CTTCGATCCGCCTCCTGGAGCAGGGACGCTAA 10315 33 97.0 34 T................................ ATGACGCAACCCTGATCTCTTTAATGCGGTCGAT 10382 33 100.0 34 ................................. CCTGGTGGTAGAGGCACGGCAGATATGGTTCGCC 10449 33 100.0 33 ................................. TCGTGTTGGAGAGCACGTCATAGGTTGTCGGGT 10515 33 100.0 33 ................................. ACGACGCAGGTGTTGACGTTCGTCCCGCTGGCC 10581 33 97.0 33 T................................ TGTTGTCCGCGATCAGCCTGCCGCCGCTCTCGC 10647 33 97.0 33 A................................ GCGCATGCGCGAAGGCGGCGGAAACTGCTCAAA 10713 33 90.9 0 A..............................CT | ========== ====== ====== ====== ================================= ================================== ================== 14 33 98.3 33 GGTCGCCTCCCTCGCGGAGGCGTGGATCGAAAC # Left flank : GTTCTCGTCACCTATGATGTGCATACGCTGGAGGGAAACGGCCCCGCACGCCTGCGCGCCGTGGCGAAAGCCTGCCGCGACTACGGCCAGCGCGTGCAGTTTTCGGTCTTCGAGATTGAGGTGGACCCGGCCCAATGGGTGACGCTGAAGGCGCGTCTGGAGAGCATCATCAATCCGGATGTGGACAGCTTGCGCTATTATTATCTTGGCGCAAACTGGCAGCGGCGCGTGGAACATGTGGGCGCCAAGCCCGCCACCGATCTCAATGGCGCCCTCATCATATGACCGCCCGCCGCCGCCTCGCAGATCGCGACCGAAATCCTGGCGCGAACCCCAAGCGTGTCGCAAAAGCCCGCCATGTTCGCACCGCGAACCGCTCCTTGAAATCGTGAAGTTTTTTGCGGTGCGGCGCATTCACCGCTCCGGCATGACCCCTTCGCCACCCCCGTTCGCGACGGCGACCTTTACGACCCAGCAAAATCCGTGCTTTAGAGCAAGCC # Right flank : TTTGGTGCCGTCCGACGCATGGTGGATAGAGCTGGCTCGGGAAATCTGCACAGCGGGGATAAGGGGGATTTCTGCCTGACTTCGGCTTAGATGCCGGGAACAGGAGAGACCATGACGGGGCGACCGCGCCGGAACCACAGCCCGGCTTCCAAGGCGAAGGTGGCACTTGCCGCCATCCGAGCTGAGCAGACCCTGGCGGAATGTCCCCGCAGTTCGACGTGCACGCCAACCAGATCAAGCAGTGGAAGACCAACTTCTTGAGGGGGCGACGAGCGTTTTCGGCGATGAGGCCAAGTCGGAACCAGCGGGTCCACTTGTCGATGTCAGAACGCTTCACGCCAAGATCGGAGAACTGACGCTGGAGAACAATTTTTATCCAATGCGCTCGGCAAGGCAGGATTGTCGGGCGGAAAGAAATGATTGACCGCTCGCAAAAGCTATCCGTGGTTCGCCAGGCGAAGCTTCTCGGCTTCAGTCGTGGAAGCGTCTATTATCTGCCG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTCGCCTCCCTCGCGGAGGCGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CGTCGCCTCCCTCGCGGAGGCGTGGATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.50,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 24993-26399 **** Predicted by CRISPRDetect 2.4 *** >NZ_MKIO01000020.1 Rhizobium rhizosphaerae strain MH17 scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 24993 31 100.0 34 ............................... ACCAACCCGGCGACGGATTACACCGATGCCGAGA 25058 31 100.0 36 ............................... GGCCCGTTGGGCGTCAATGGATCGACACCACCCGGC 25125 31 100.0 36 ............................... TCTGTGTCCTACGCCGGCAGCATGGAACTCGCGCTG 25192 31 100.0 34 ............................... TGCTCACGGTCGGCAAGTTCCGGGAAACCCGCGT 25257 31 100.0 35 ............................... GTCAAGCGCGGGGAGGAGGGGCGGCATGCGGCGTG 25323 31 100.0 34 ............................... CTCGTCTGGTCTTTCAACGCCACGCCGCCGGGCC 25388 31 100.0 33 ............................... CTGCACCTCGGCCTCGAGGGTATCGAAGGCAAG 25452 31 100.0 33 ............................... TGATAGGTGCTCGTGCTGCCCTCTTCGTTCTTC 25516 31 100.0 33 ............................... CATGCGCCCGGTCCAGGTGATGGTTTTGGCCGG 25580 31 100.0 35 ............................... AGGTTGATCTCGCGGAGCTTGCTGCGGTCTATGGT 25646 31 100.0 34 ............................... TGGCCACCGAAAAACCAGTCGCCGCGATAGCGCA 25711 31 100.0 35 ............................... CTCGTCTGGTCGTTCAACGTGACGCCGCCAGACCG 25777 31 100.0 36 ............................... ATCAGCGGCGCTGCCTGGGCGCGCAGTGCACCGGTG 25844 31 96.8 34 ...........A................... CTGTCGCCGGTTGGGCAGGGCGGAGGTTCCCGCT 25909 31 96.8 34 ...........A................... GCGCGCCGGCTGATCGTCCGTGAGCAGGGCTTCC 25974 31 93.5 34 ...........AT.................. TTGACCACGTCGAGCAGCGTCAGCGCGGGGCAGG 26039 31 90.3 37 ...........AT.........A........ ACCTCGTCGACCGTGTAGGTATATTCGAGCGTCAGAT 26107 31 93.5 35 ...........A...........G....... GGCTTTTGGCAGTTCTGCTGGGGCTTCAAGCAGCC 26173 30 93.5 34 ...........A.-................. GAGGTGCTCGGCAACGGGCCTGACGGGACCACCT 26237 30 87.1 34 ...........A.......-.C.G....... GCTGATCCGGATCTCGCACGGGCCGGAAGGCGAA 26301 31 96.8 35 ............G.................. ATCCAGGCTGGCCAGTACAGAACGTTTCCGAGGCC AC [26312] 26369 31 83.9 0 .C....C...CA..A................ | ========== ====== ====== ====== =============================== ===================================== ================== 22 31 96.9 35 GTCGCCTCCTTGCGGGGGCGTGGATTGAAAC # Left flank : CGCCCCTGACCTGCAGAAGCTTGAGAATGCCGATGCGCACGGGCGCGGCCAGCGCCTTGAGCAGAAGCGGATTTTCCAGGGGATCGACGAGAAGGAAATGGCGGCTCATGAAGACCTGATGCGGTGAGCATGGCCGGCCCAAGGCGTGACGCTTCGGCGGCGGACATGGGAGGAAAACAAGGCATGGAGCCGATCCGGGCCGATCCCATCCACCGGACGGCTTCGGCGGGCCGCTATTCGTATCACCTTTTTTGATTTAATCAACTGTCCCGGTCCGCCCTGACATGGCAGCCCATGCCGCTTCCCGTTTCACGCCGACCGGTGCGAACCCCAAGCGTGCCACACTATGCCGGGAGGTTCGCACTGCGCCTATCTCGCTGAATTTGCACGCGGGAGAACAAGAATGGGCAGCCTCGGACCGGTCGGTCTGCGGCAAAGCGGATGCTTTCGCGCACAGCGGGGATTTGTCACAACGATTTTCGCGGGTTATCGTTGGGACG # Right flank : CCAGAAGTCCATCACGCATCTGTCTGCGTGCACGCCGCCGCCTTGTTCGGCGCTGTCGTGGCCGCGTTGCAGCAGGACACCGCAGGGTGTTCCTCCTGCACGCGCGCGTCCACGGACACCTGCTTCACCCAATCAACAGCCGCGCCCCCAGCGCTGCGGCCAGCGCCGTCGGCATCGCCACCGCGCCGACCTTGAGGAAGCGCCAGAAGCCGACATCCTCGCCTTCGCGGCGGATGGCCTGGAGCCAGAGGATGGTGGCGAGCGAGCCTGTTACCGAGAGGTTCGGCCCGAGATCGACCGCGATCAGCAGGCTGTCGATGACGAGGCGCGGCGGGGCGGCCTGTTCCACGGCGAGGCTGGTGATGAGGCCGGCGGGCAGGTTGTTGATGAGGTTCGAGCCGAAGGCGAGCACCGTGCCGGAAACCGCGCCGAGCGTGACCGGATCCACCCCCGGCCGGGACAGCAGGCCGGCGACGTAAGCGATGACGCCGGTCTGATTC # Questionable array : NO Score: 9.11 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCTCCTTGCGGGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.50,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-21] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : NA //