Array 1 145656-142516 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHCDJ010000002.1 Chromobacterium subtsugae strain CV026 Contig_2_325216bp, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 145655 29 100.0 32 ............................. ATGGCGGCGCAGCGAGCGCGTTCGCGCCGGCG 145594 29 100.0 32 ............................. TCACGACAAAATAGGAAAAAATAATATGCCTA 145533 29 100.0 32 ............................. GCTTACCTTAAATTCTATCGTTTTGGTCCTAT 145472 29 100.0 32 ............................. TGACTACCGAAAATGCGGCGTTTACCGCTGTC 145411 29 100.0 32 ............................. CCGGCAGTCTTTGCTAATTCGCAGCGGGAACG 145350 29 100.0 32 ............................. CTCAGCGAGGTCAACGCACAACTCGCGCTATT 145289 29 100.0 32 ............................. TGGGAAAACAACGTTACCCGCTTCTTCCGCTT 145228 29 100.0 32 ............................. CCCTAGCTAGCCAGAATGGCGCAGGCGCTTTC 145167 29 100.0 32 ............................. GAAATTCCGCGACAGGGCTTCAGATACAATAC 145106 29 100.0 32 ............................. GTTGAGCCGAACGTGCAATATTTTGCAGTTTT 145045 29 96.6 32 ............................T CGAACCGCACGGCTACCAGATGCTAATCATCC 144984 29 100.0 32 ............................. TCCTGGCGCATTTCCAGCGCGGCGAACAGTGG 144923 29 100.0 32 ............................. GAGATTGAGATGTTTGAAGTCACTCTGAAGCA 144862 29 100.0 32 ............................. GCGATTTGCTCTGGAGCGCGCCGAACTCAATG 144801 29 100.0 32 ............................. GGCGCTCCAGGGTGGGGCCGCCCCGTCGTAGA 144740 29 100.0 32 ............................. GCAGCCGACAAACTGTCCAAACTGGACAGTAG 144679 29 100.0 32 ............................. GTCCGCGATTACGCACGACTACAGGCGGCCTA 144618 29 100.0 32 ............................. GCGGAGCGTTGGGCGTCGAATTTTTTCGTTCT 144557 29 100.0 32 ............................. TCAGAGTCAGGAGGCCCGGCTTGCCCGACTCG 144496 29 100.0 32 ............................. CCCCACGTAGTCGCGCCGGCGGGCGCGCTGGA 144435 29 100.0 32 ............................. ATGTGGTTTGGCAATATGATAGCGTGATCACA 144374 29 100.0 32 ............................. ACTTTTTTCAACTTTTAGGTGACTACGTATTT 144313 29 100.0 32 ............................. TCCGACCTCGCCCGGCTACAGCGTGCGTTTCC 144252 29 100.0 32 ............................. CAAGAAGTAGCGCCATGGCCAAGAACTGGATC 144191 29 100.0 32 ............................. CTAAGGAAAACCGGCCGGCTATCTCTGTTATC 144130 29 100.0 32 ............................. TACCAGCGCACCCTATGCTTCTTCACTCTGCG 144069 29 100.0 32 ............................. ATGCGGTGGCCACCGTGAATGCGGTTGTAACC 144008 29 96.6 32 ...........A................. TCATTTCTCGCCCTCGATATTAGCGCTTCCTT 143947 29 100.0 32 ............................. GACCACGCCTCCTGCTGCTTCTCGCTTCGCGT 143886 29 100.0 32 ............................. ACGAAACCGAATCGCGCGTCAGAGCCGTCTTC 143825 29 100.0 33 ............................. GAGCTGAAGAATGGAATTCCCGACGCAACCTAA 143763 29 100.0 32 ............................. GGCGCAGATCCTCGCCCGGTCCACCACGCAAG 143702 29 100.0 32 ............................. ATGGGCATCGGTTACGAGGCCGTCGAGCTGCC 143641 29 100.0 32 ............................. CCGCCTATCAGGACGCGGACACCCAGATGAAT 143580 29 100.0 32 ............................. TTGGGTACCAATCTAGCGCGTCCAATTCCGTG 143519 29 100.0 32 ............................. TGGTCCGATTCTGCCGACCGTCGACACCAACA 143458 29 100.0 32 ............................. GCATGGCGACCTTGGTTCGAGGCGCGCCCGGA 143397 29 100.0 32 ............................. TGCTCATCGATATCCTCCAGCAACCCGGCATG 143336 28 96.6 32 ........-.................... TCATCGATGCTGATACGGAGCTGAAACGCAAT 143276 29 100.0 32 ............................. TCGCGCCTATAACCGTGCCGAGGATCATTGCG 143215 29 100.0 32 ............................. GCGGCCTATGAGGAGTTCTAGCCCCCCCGCCT 143154 29 100.0 32 ............................. CCGATTTTGTCCTGACTGGCCCGGATAACCTT 143093 29 100.0 32 ............................. TTCGGTGTAGGCAGCCTGCAGCTGCTCACGCA 143032 29 100.0 32 ............................. TTTTGTCCATGAGAATGCATGAATATCTCCGA 142971 29 100.0 32 ............................. TCGAGTACCATCACGCGGTCTGCGAATATGCT 142910 29 96.6 32 ..............A.............. CTGCAGTTGGATTTCGAGCAACAAACCTACGC 142849 29 100.0 32 ............................. TGCCGGCCGCCCTGCAGCCGTATTTGCCAAAA 142788 29 100.0 32 ............................. AGTTCGCGCGCTCGATTGCGAAATGGGGGTAT 142727 29 100.0 32 ............................. AGGGCGTGGCGCTGGGCCGTGCGAAGTACCGC 142666 29 100.0 32 ............................. CCAATACCGTTTTGCCGGCTCCCGTTGGCGCT 142605 29 100.0 32 ............................. ATTCGCGAACAACTGAATAGCAACGGCCCCGA 142544 29 79.3 0 ......T............T..C.GT.G. | ========== ====== ====== ====== ============================= ================================= ================== 52 29 99.3 32 GTGTTCCCCACGCCCGTGGGGATGAACCG # Left flank : CGGACATCGAGACGATGCTGGACGCCGGCGGCCTGGATAAGCCGGAGTCCCAAGGCGTGGTGGACGCGGCGTTTCCGGAGGACGAGGGGCTGGGCGATGCTGGTCATCGTACTTGAAAACGCGCCGCCCCGGCTGCGTGGCCGGATGGCGATCTGGCTGCTGGAAATCCGCGCCGGCGTTTACGTCGGCACTTACAACCGGAAAATCCGCGACTACCTGTGGCAACAGGTGGAGGAGGGGCTGGAGGACGGCAATGCGGTAATGGCCTGGCAGGCCGTCACCGAGGCAGGCTTCGACTTCGTCACCCTAGGCGCCAACCGGCGGATGCCGGCCGAGTTCGACGGAGCCAAGCTGGTGTCTTTTTGGCCTCCACCCGGGGCGGATGGGGCTGGCGAATAGGATGTTGTCGGCTTGGGCGGAAAGGGGAGTTGGGTTCTTTAAAAATCGGTAGATTTTTTGGAGGTGTTTTTGTTTTTAAAAATCAATTGCTTGCAATTGGT # Right flank : ACTAAAATTCGGCAAGTTACGCTTTGCACTGGGTGTCCCGCACTCCGCGTACCTCCTACCTACTGTTGCATCTCGCTTAGATATTGCGTCAGCCGCAGCGTCAGGCTGGCGCGGGCGGCGTTGGCTGGCCATACCGCGTACACCCCCAGAGCTTCCACCTGCCACTCGGGCTCGACTTCGCTCAGCCTGCCGGCTGCGATGTCGTCCGCCGCCAGGAAGGCCGGCGGGGTGGCCAGGCCGCAGCCGGCGATGGCCAGCTGGCAGACGGCATCCAGGCTGTTGGCGCGGATGGCTGGCTGGATGGAGAAGCTGTGCGCCTCGCCGGCCGCGTCTAGCAGGGTTTTGTGGTCGGGCCGCATGCGTATGCCCAGCCAGGGCCAGTCGGCCAGCTCTTGCGGATGGCGGGGCGCGGGGCGCGCCGACAGCAAGGCGGGCGCGGCCACCAGCAGGCGCGGCATGTCGAACAGGCGGCGCGATTTTAGCGCGCTGTCCGGCAATTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGCCCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 156362-155418 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHCDJ010000002.1 Chromobacterium subtsugae strain CV026 Contig_2_325216bp, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 156361 29 100.0 32 ............................. TAGGAGGGCGGACATGACAGATCGCAGAATTG 156300 29 100.0 32 ............................. TTCTTGTACTGGATGTCGAACACCACCCCACG 156239 29 100.0 32 ............................. TCATCGATCAGTACCTCGAGGAACGATCGTTC 156178 29 100.0 32 ............................. GATGCGCATCCGCACCGATTCGATTTCACCTA 156117 29 100.0 32 ............................. CGATGGTCGAGTGGTTGGCTTTAACGGAACGC 156056 29 100.0 32 ............................. GAGGCCGTGCATTTCGGCAACGTGCTGGAGGG 155995 29 100.0 32 ............................. CTCATCGAGCGATTCGTTGGTACTGACGCAGC 155934 29 100.0 32 ............................. CGGGTGCCATTGAGCAGAAATTGCTGGGTCGG 155873 29 100.0 32 ............................. GCGATGATCCGGACGATGATGACGACGACGGC 155812 29 100.0 32 ............................. AGTTGCGAATCACCGCCAATTTCCTCCGTTTC 155751 29 100.0 32 ............................. AAAAAGGATTAATCAAAGCCGGCCCAGCTGGA 155690 29 96.6 32 ............................T TCTCGTCTCCAAAATGGTAATGATCCCAGTAC 155629 29 100.0 32 ............................. TCTAACAGAGCAGTTACGCCAACGAAGCCAAA 155568 29 100.0 32 ............................. CCGAATCCGCCCAACTGCTGGCCCATGTAGCT 155507 29 96.6 32 ............................C GCTGGGCATGGGTTGCCCCGAGATCCGACGCG 155446 29 89.7 0 ........................GG..A | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.9 32 GTGTTCCCCACGGGCGTGGGGATGAACCG # Left flank : TTTTCCAACGCCTACGCCGACAATCTGCTGGCGCAGTGGCTGTACAACGTGCCGCCGCTGTTCCACCTGTCCGCCGCCAGCCTCAAGGCCAGGCTGCCGCAGCTACAATGCGCCGACCGCGCCTTCCGCCCGGTTCACCTGCAACTGGCGCTGCAGGCGCTGACCGGCTTCGTCTGGCTGAACGCCGAGCGCACGGCGCAGCAAACCCGCTTCGCCGACGGCAGCCGCCTGAGCGCCAACTTCGGCGCGACGGCGGTGGGCGAGGGCGATCAGGCGCTGCCGCCGCAAAGCCTGAGGCTGGAGCTGGCTGGCCAGCCGCCGCGGCTGCTGCGGGTGGCGGATTGCGGCGGGGGCTGATGCGCGGCGATAATGCCGTTGTCGTTTTGCGGGCGCTGTGCCTGCGGTGACCTCCGCCGCGCTGGCCGCAATTTGGGTACGGAATTCTCGGTAGGATTGGGATGCGCTTTTTTGTTTTGAAAAATCAGTGAGTTGAATTTGGT # Right flank : CGGCTTGCAAACGTGATGTGCGGCTTGTTTTTCTGGATGGAATGTCTCGGCTTGTGCCTGCCTGGCAAAATGCCGATAATGATTGAGCAAATTGCCTGATTGGAGATTGCCATGCCCGCACGCGCCGCATTCCGGCCCGACCCCGTTCTCATCCGCCGCGCCACGGTCAGGGAGGGAGAGCGCCGCTCCCGCCAGTCCGACTTGCTGGGCGCGCCGGTGAGCAGCGATTACGACATCGTGAAAGAGGTAGCCAAGGGCTTGGATCCCGGCGTGATCACTCGCCTGACCGATGAGGGGCTGACCCGGCGCGAGCTGGAGTTCGTCATTCCGCCGCGTACGCTGACCCACCGCATCAAAAACGGCGAACGCCTGAGCACCGACGAATCCGAACGCAGCGTGCGGCTGGTCAACCTGCTGCTGCAGGCCGAGCAGCTGCTGGGCGGCAAGGAGGCGGCAACCGCCTGGCTGCGCCAGCCATTGCGCCGTTTCGATGGCCGCAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGGGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 162328-160712 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHCDJ010000002.1 Chromobacterium subtsugae strain CV026 Contig_2_325216bp, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 162327 29 100.0 32 ............................. AAGCTGAACCCCTTGTGCCTGCCCTCCTCCTT 162266 29 100.0 32 ............................. GGATTTAACCAGTTTCTTGGGGTCGGGGTCTG 162205 29 100.0 32 ............................. CGCGGCACGACGCTCGTTCAGCGTGCCGCAGA 162144 29 100.0 33 ............................. GACGTCTTAAACATGATGCTGGGATCTTTGGGC 162082 29 100.0 32 ............................. GTAGTGTCGTGGTTTGAGAGAAAGGCCTCCCA 162021 29 100.0 32 ............................. GTCCGCGACGACTAACTTTTTGCCGGGGGGGC 161960 29 100.0 32 ............................. GTCAGGGCGCACATCCAAGGGCAGTACTCGGC 161899 29 100.0 32 ............................. GCGTGATGATGAACGCCGACTCTCGCCAGAAT 161838 29 100.0 32 ............................. CGGATGCTGGGGCCGGTTACGCTGCTCTTGCC 161777 29 100.0 32 ............................. GCAACTGAGCCACGCCGACAACCGTGCCGCAC 161716 29 100.0 32 ............................. GTTCATGTACAAAGGGGTCGAATGTAGAGAGA 161655 29 100.0 32 ............................. TCCTCTGGATTTCAGGCGAATGGGATGCAGGT 161594 29 100.0 32 ............................. TTCCCGGATGGCCTGAAATGGATTTGCGGCTT 161533 29 96.6 32 .......T..................... TTACCTCCGGGCGCGATTTTTGTTTGTGACGA 161472 29 100.0 32 ............................. CAGTTCCTTCCGGTGAACCACGATGGCGATGT 161411 29 100.0 32 ............................. TTCCTTTCGCCTACGATCAGCGCGGAGGAGAT 161350 29 100.0 32 ............................. TAGCCGGAGTTCGGCACCGTCGGATCGGCCGT 161289 29 100.0 32 ............................. GAGCAATCAGCCATGCGCCTCTACCTCTCCGC 161228 29 100.0 32 ............................. GCGGGATCCGATGTACTGCTGTTCCAGGGCGA 161167 29 100.0 32 ............................. ATAAACCGCGCTTCTGATGATTGCGGTCAGGT 161106 29 100.0 32 ............................. GTGCCGATGCCGCGCATGCACTTCGCCATCAT 161045 29 96.6 32 ...................A......... CCGGCGATGTACTGGTTCTGCACGTCGAACCC 160984 29 100.0 32 ............................. GCCGTGGCGTCGCCGCCGGTTACCACCAGGGC 160923 29 100.0 32 ............................. GCGAGTGGTTTTCAGGCGAATGGAATGCAGGT 160862 29 100.0 32 ............................. TGGGGGTCCGGTGTCAGGCCGTAATAGGCGGC 160801 29 100.0 32 ............................. TGGCTGGTGGGGTTGGGGGGAAACAGGCCACT 160740 29 89.7 0 ..............C..........CT.. | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.4 32 GTGTTCCCCACGCGAGTGGGGATGAACCG # Left flank : GCGTGCGCGCGCTCCACCGCCTCGCGGATGTCCTTGACGCCGGCGAAAACGGCGGAGAGCGGGATGAACTCGGCATCGAAGCTGGCGGCGAGTATGCGCGCCAGCGTGGTTTTGCCGACGCCTGGCGGCCCCCACAGAATCATCGAATGCGGCTTGCCGGCCGCCACCGCCAGGCTCAGCGGCTTGCCCGGCCCGATCAGGTGCTGCTGGCCGATGACATCGTCCAGCCGCGCGGGGCGCAGCGCTTCGGCGAGCGGCTTCTGGGGTTCGGCGGCGAACAGGTCGGGCATGGCGGGCTTCGGGCGGGATATTGCGGAGCAACAGTATAACAGTTGGCGGCAGGCATGAAAAAAGCGCCAGCCAGGCGTTTTGGGCGTGCATGCTTGCGGGATGGCGGCAGGCTATGGATCTGGGCGATTTGAGCGAAGTATTGTTCCGGAAAAATCGGTAGAATTTGGGAGTGGTTTTTTATCTTTAAAAATCAGTGGATTGAAAATGGT # Right flank : CCTGTATCGAATGCCGGCATGAAAAAAGCGCCCTTGGGGCGCTTTTCGGCATCACGAGCTGAAGAAGGCTTAGGCGCGCTTCTTGAATTCGTTGGTGCGGGTGTCGATTTCGATCTTTTCGCCGGTGTTGACGAAGGCCGGAACCTGTACTTCGAAGGTGGTGCCTACCAGGCGGGCCGGTTTCAGTACCTTGCCCGAGGTGTCGCCGCGCACGGCCGGCTCGGTGTATTCCACTTCGCGGACTACGGTGGTCGGCAGTTCTACGGAGATGGCCTTGCCATCGTAGAAGGTGACCTGGCAGATGTCTTCCATGCCGTCGACGATGAAGTTCAGGGTGTCGCCCAGGTTGTCGGCTTCCACTTCGTACTGGTTGAACTCGGTGTCCATGAACACGTACATCGGGTCGGCGAAGTAGGAGTAGGTGCAGTCCTTGCGGTCCAGAACCACCACGTCGAACTTGTCGTCCGCGCGGTATACGGCTTCGCTGCCGGCGCCGGTCA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGCGAGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGCGAGTGGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //