Array 1 803672-802143 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046838.1 Vibrio cholerae strain 2011EL-1271 chromosome 2, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 803671 28 100.0 32 ............................ AGTACCTCACTGTCTGGTGCTCATGGAGACGA 803611 28 100.0 33 ............................ AATCAAGAGTGCCGGTGAATCTGAGTAATATCT 803550 28 100.0 32 ............................ AAAGAAGAAGCAAAGAAAAAAGAGAAAGAACC 803490 28 100.0 32 ............................ AAACAATAGACTCCCACCCGAAAGAGCCTACT 803430 28 100.0 32 ............................ ATCATCAAAAAACATATCGATCACCGAAAGTT 803370 28 100.0 32 ............................ ATTATCATGAGCTACGTGTTACCTTGGTTACG 803310 28 100.0 32 ............................ CAGTCCGGAAGTGCTCGTTGCAGTGAAAAACG 803250 28 100.0 32 ............................ TTTTTGCATTGCTTTGCATTCACACCAAAACA 803190 28 100.0 32 ............................ TTATCCAAGGGATAAAAAAATGCAAAACTTTA 803130 28 100.0 32 ............................ ATACCAAGTTACCCCAAGCGTTGATTTAAGCT 803070 28 100.0 32 ............................ GCATTAGTGTGGCCGGACATAAATGTTCTAAA 803010 28 100.0 32 ............................ TTCTCTGAGCATCTTCAATCTGATCATTAAGT 802950 28 100.0 32 ............................ GTTAATCGCGGTGAAAGGTAAAACGAAAGCGC 802890 28 100.0 32 ............................ GATACCGTTCACTACAAAACGCAAGCTGAGGT 802830 28 100.0 32 ............................ AAGTGGGATGCGCGCCAACTTGAATCTTGCAT 802770 28 100.0 32 ............................ CGCAACACCAGCTTGATAGTTGGTTGATTGAA 802710 28 100.0 32 ............................ GCTTCACCCTTCACTGCTTTATTGCCCGTTAA 802650 28 100.0 32 ............................ GCGCTGGGGCTGGTGGTCAAGGGTCAAGATAA 802590 28 100.0 32 ............................ ATAAAGAGGAAGGCCGGAAAAATCAACACCGG 802530 28 100.0 32 ............................ GTCATCAACTGATCACCAAAAAGGAACTGTAA 802470 28 100.0 32 ............................ TTAGTTCATGAGGGTAATATTAATCGCCTTTC 802410 28 100.0 32 ............................ ATTATAGTCAATGAATTCAGAACCAGACCACC 802350 28 100.0 32 ............................ TTTGACGTTTTGCGTCATAGTGCTGCCTGCTG 802290 28 100.0 32 ............................ TACAAAATGTCGTCTCTTTTGATTGATCGTGT 802230 28 100.0 32 ............................ ACTGAGCGCGAACATCACTGGAGCGTAACTAG 802170 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 26 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GATGTTCCACACAGCAAGTTTGGTTTCACAAAAGGCGGCATCATCGCTGTGATCTTGCTTTCTTTGTCGCGGACTCTTAATCGTGGCCAACTTAGCCTAGATCGTTTTAAGTTTTGGCAGCCAACTTCACAGCTTTTGGCGTTGGACGTGTGTTTGTGAGATGCTTCTGCGTAAAATGGCCTTCAAATAAAGGTGTTTAAAAATCATTATTAAACAATAGGCTACGAAGCTAACAAACGCCTCAAGAGGGACTGTCAACGCGTGGCGTTTCCAGTCCCATTGAGCCGCGGTGCTTGCAGTTGTTGTGTTTAAGTTTAGTGGTAATGCGTTGCCAGCCCCTTAGGCGGGCGTTAACTGGCAATGAAATTACCCATCTTTTTTCGTTGAATTTTAACTTGTTGATTTATATTAATAATAAATCGAGTAAAAAATAAAAGGTTATTCTTAGGAATTTGATGTAATTACTATTATTAACAATAGGTTACTGCTAAAGTTTCATA # Right flank : TAGTTATAACTTTGGCATTTGGGATCGGCCAGTTAACAAACGCCTCAAAGGGACTGTCAACGCGTAGCGTTTCCAGTCCCAATGAACCGCGGTGGTTACGACTGTTGTGTTTAGGTTTGGTTGTTATGCGTTGCCAGCCCCTTAGGCGGGCGTTATGCTTAAACCATAAAAATCAGTTGGTTGTGTTATCGATTTCTTTGGCATTTCGTTCGGGTTTTTTCGGCAATTCAATATTGTTTGTCGCTGCCTTATGAAGCGGCAATGTGTCTGGCGCTATAAATTCTGTGTTATTGCCTCATTGGTTTTTTGAGTCCACGCGAGGTGAGTTTTGCTCTCTCAAGTCGCTTTGAGCAGTTTGGTGCCTTTACTTATAGGCTTAAAGTTTGTTGGCAATTGAGCATTGTTTTGCGCTGCCTAATGAAACGGCAATGTGTCTGTCGCTGTAAATTTCAGTGTTATTGCCTCATTAAGTTGTCGCGCCCATGCGTGGTGAGTGAGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 127940-129827 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046839.1 Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 127940 28 100.0 32 ............................ TTACGGTGAGAATGTCGTATTTACCTCAGTCA 128000 28 100.0 32 ............................ TATAAGTGATTGGATATTACTTGGCGCACCAG 128060 28 100.0 32 ............................ CCGAACGGTCGATAACGCCATTTACACGCTCA 128120 28 100.0 32 ............................ CATACCCAATTGAAGCGAGAATAATCGCACCA 128180 28 100.0 32 ............................ TTAATAAACAAAAAGCGACCATATAGGCCGCT 128240 28 100.0 32 ............................ TCGATGACGGTTTGTAGCGCTTCGTTATTACC 128300 28 100.0 32 ............................ CCCCAACAGCACCAACCGGGACGATGCTCACG 128360 28 100.0 32 ............................ GCATTAACGCGACGTGCGTATAGCTCGCGCTC 128420 28 100.0 32 ............................ TGACGAAGTTCATATTGAGTATTAATTCGTGA 128480 28 100.0 32 ............................ CGACTGTTTCTCTTGGCATGGTTCCCCCTTGG 128540 28 100.0 32 ............................ GTATTGAGCGCCTAGCACTTCAATAGCGAGAT 128600 28 100.0 32 ............................ TGCACGTTTGATTTCTTCCAAGTATTCTAGAT 128660 28 100.0 32 ............................ GTTAAGCCAGTGCCATTTTCAAGCGTTGCGGA 128720 28 100.0 32 ............................ TGATATGGCGGGTTGTGCAAATCCAAATCCTG 128780 28 100.0 32 ............................ TCAGTATGATCTTTATTAAAGACATAGAGCGA 128840 28 100.0 32 ............................ TGGACGAATTGGAAATCACCCGTTTTCCCCAA 128900 28 100.0 32 ............................ AACCGTTAAACCTTGCAAAAAAGTAACTTAAT 128960 28 100.0 32 ............................ TATGGCGATTACTACGCTAACAACGAAATCAA 129020 28 96.4 32 ...........T................ AAACAGTCGATTAACTACTTTTGTGGCCAAGC 129080 28 96.4 32 ...........T................ CAACAAAAGCGGGGTTTTTGCAGGTTAATACG 129140 28 96.4 32 ...........T................ TTTACGGTGGGAGTGGAGCGCACGGCGGCAAT 129200 28 96.4 32 ...........T................ TACAACGTACAGAGAAAGCTTGAGTTATCTCC 129260 28 100.0 32 ............................ TAAGCGAACATCAATGAAACGATTGATGTCTG 129320 28 100.0 32 ............................ GCCAAGAGAACTTGCCATGGGTACAACCGTTA 129380 28 100.0 32 ............................ ACGGCTCAACGTCTTGTGGATAAAGCTTGCCA 129440 28 100.0 32 ............................ TGAATTCAACAAGCCAGCATTTTTCAATAAAG 129500 28 100.0 32 ............................ TTTAGCAGTGTGGTTACAGATATAAAGAGCTA 129560 28 100.0 32 ............................ AGAGACGGAGATAATCACTTGCTTATCGTCAT 129620 28 100.0 32 ............................ TAATTAATGTTTCTGAAAAAATAATTGAACGA 129680 28 100.0 32 ............................ CGACCGGGGGCGCTGACCTTGGTCTTTGGGTT 129740 28 96.4 32 ................A........... TATCCAATCTCCTACATAAAGCACTGACAATC 129800 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 32 28 99.4 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AGCGCATTGCATGATTTGCAGGGGTTAAATTGGTTAGGACCTTTGGCAGGATATTGCAAGATTACTACGGTTACTCATGTGCCAGACCAAGTGGAATATCGCATCATTTCAGTTAAACGCAGTAATTTAAGCAAAGCAAAATTAGCGCGTTTAATTGCTAGAGGTAGCATAGATAAAGATGGTGAGAAACGTTACAAAGTAAAAATGCTTCGCCAAGGGTTTGATAATCCATACCTTGATCTGTCTAGCAGTTCAACAGGGCAGGTGTACCGAAAATTCTTTGAGTTTAGTGATATTCAAGCTGAGCCAGTTGATGGTGAGTTTGATAGTTATGGTCTAAGCAAAACAGCAACTGTACCTTGGTTTTAACCCTTTATTTTTACTCTTTAAAAATGTGCTTTTAAAACAAATGGTTGCAACGGGTTGTTTTTAACAAGGTAAAAAGATGATTTTTACCCTAACAGCTTGTTGCAGCTTATTTTTATCGGTTTATTCTATTG # Right flank : AAGAAATAAATATCCGACGGAAAAACAAAATCTCGATGGCCGCTTATCGGTTTCATTACTTCCAATAGCGCCAGCATCTGCTCAGTGAGAGGGATGCGGTGTTCTCTTCTTTTTTTCATTCTCTCTGTGGGAATAGCCCCAACTTTCTCATCCCAATCAATGTCGTCCAACGCGCACTAGATGGCCTAGGCATACTGGTGTGTTACCACTTATTTAGGCTTTCAGTAAGTGCAAATATCCAGCACCAGCCACACTGTAACTTCCATAACTAGATTTTTCGATATGCTCACTCCACCAGCTCATAAGCTTTCGACGAGAGTCTAAATAGTCGGTGCGGTTGTATGCTTTGCGTATTTGGTTTTTGTCAGTATGAGCCAATGCGGCTTCAATGACATCAGGTTCAAAGCCCTGTTCATTAAGAGTGGTACTTGCCAAAGCACGAAGACCGTGCGCGGTCGTTCTATCCTTAAATCCCATTCTGCTAAGTGCTTTATTAGCGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1094618-1092067 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046839.1 Vibrio cholerae strain 2011EL-1271 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1094617 28 100.0 32 ............................ ATTGACAATTTCTTCGTCAGTCCAACCGTGGT 1094557 28 100.0 32 ............................ TTGCAATTGAGAACCATGAAAGTCCCACGGAC 1094497 28 100.0 32 ............................ TTTTTAGTAAAGCTTGGCTTACTCATGCTCAC 1094437 28 100.0 32 ............................ GTTTTCACCGCTTGGTTGGCGCTGCGCCGCTC 1094377 28 100.0 32 ............................ CATAGAATTTCGAACTATTGAATGTTATGCTT 1094317 28 100.0 32 ............................ AGCTTCATCGATGAGTATTAACGCGCCAAGAT 1094257 28 100.0 32 ............................ GTATCACGTTTACCTTCTGAATATCGCGGAAC 1094197 28 100.0 32 ............................ TGTATAGTAAGTTGTGTAAGCACATTGTTCGT 1094137 28 100.0 32 ............................ TGCCCCCTTAAGCCGCCAAAAGAGACACTTTA 1094077 28 100.0 33 ............................ TGATTGTCAATGACTGCAAAATGACGCTTCTCA 1094016 28 100.0 32 ............................ ACTGGAATTGCAAGGTATTTCGCGCCATTCTC 1093956 28 100.0 32 ............................ TAAACCCGCAGGGCATTCAAGACGCTTTTAGA 1093896 28 100.0 32 ............................ GCTTGGTCTAGTTTTTGTTCAACTTGCTTTAC 1093836 28 100.0 32 ............................ GTTCGCCGTTCTTCTTCTCCCAACGTCTTTGC 1093776 28 100.0 32 ............................ AAATACAGCTTTTGGGAAACTCGCACCTTTCA 1093716 28 100.0 32 ............................ CATTAAAGAAATTAGCTCAAAAATGGGGATTT 1093656 28 100.0 32 ............................ GTGACGGAAACCCAAAAGCAACAAACTAATCT 1093596 28 100.0 32 ............................ AAGCAGAACGGTTGCGCCGCTTGCGGCCTCAA 1093536 28 100.0 32 ............................ TTTATGAAAGGCGCAGTGCTTCAAGTTGTTAA 1093476 28 100.0 32 ............................ GCATTCCGTGAAACAGCGGCTTACCCAGAAAT 1093416 28 100.0 32 ............................ CGTTTAAAGCTTCAAGCGTGACGATCGGAATA 1093356 28 100.0 32 ............................ ACGCTGGCAATCATGGCGCGGTAAACATCGTC 1093296 28 100.0 32 ............................ ATCTCATGATGAGTTTGAGGTCCTCGCTCTCG 1093236 28 100.0 32 ............................ GCACGCTAGACGCGATGGCATCAGACATCATC 1093176 28 100.0 32 ............................ ACGACGAGTGTACGCGCTGCAATGAAGCCATT 1093116 28 100.0 32 ............................ TTTACCCAAGTTCATAATAACGCGCTTAAACC 1093056 28 100.0 32 ............................ TGACGAAGATATTGTCGAGAACGCGCCAACAC 1092996 28 100.0 32 ............................ AAATACAGAGATGAAGAGTGCGGTGGATTTTC 1092936 28 100.0 32 ............................ TCTAATTTCTGTTTTCCAGTGTTTATAGCCAT 1092876 28 100.0 32 ............................ AGACGAAGATATTGTCGAGAACGCGCCAACAC 1092816 28 100.0 33 ............................ TCTTGAAATGCCCATCAAAGAACTTAACGAACA 1092755 28 100.0 32 ............................ ATCGGTCCCATACCAACGTCAACGGGAACCGG 1092695 28 100.0 33 ............................ CATACGAGCTGGCAACCTTCTGAGATGTTAGAT 1092634 28 100.0 32 ............................ ACACCTGAGCGAACCACTTTGTAGTAGTCCAG 1092574 28 100.0 32 ............................ TGTACGGGGGGGCGTATTACTCGAATCTTGGA 1092514 28 100.0 32 ............................ CGCTTGTTTTTATCAAGAATACCAACGCGAAT 1092454 28 100.0 32 ............................ AAGAAGCGCGGTAGCCTGTAGCATTCATCATT 1092394 28 96.4 32 ...........T................ TGAATCAATCACCGCTGCAAGGGCGGCTTTAG 1092334 28 96.4 32 ...........T................ ATTACTACTTTCTCGATGGTTCGTTGCTCAGC 1092274 28 96.4 32 ........T................... AATACATGTTTGGCATCGCTAACCAGCTTTAT 1092214 28 100.0 32 ............................ TTCTATGACATTCCCGCCATGAAGTAATTGAA 1092154 28 96.4 32 ...........T................ ATTGTGTAAGGGTCGTTGTGCTTAAAGCGCTG 1092094 28 85.7 0 ..........AT.............TT. | ========== ====== ====== ====== ============================ ================================= ================== 43 28 99.3 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GATGTAACTTACGTAAGCTTTGTACGCAAGCTGGTGAAATCACCCGAGCGAATAGAGCGCGATATGCAGCAAAAAGCCGAACTATGGGCAGCAAAATCCGGTAAACCGCTGGTGGAATGTTTAGCAGCTTTGCAACAAAGCAAGCCGACAGCGTTGTGTACCTTGCCCTTTATTTACTTGCATAGCCAGCAAACCAAGCAACGCTCACCAGAAAAAAACAGCAAATTCCCGCTGTTTATTGAGATGCAGCCACAAAGCACATCACAAGATGGGAGCTTTGATTGCTATGGTTTGAGTAGCAAAGCGAATGGGCAGTCAATGTTGGCGACCGTACCGCATTTTTAAATTGAACGAAAAAGGGTAGTTTTTACCCTTTATTTTTGCTCTTTAAAAATGTGCTTTTAAAACAAATGGTTGCAACGGGTGGTTTTTAACAAGGTAAAAAGATGATTTTTACCCTAACAGCTTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : GAAAGTAAATCAAACGAGGCAGTTCACTTTCTAGATTACGTTAAGGTTCTTACGTTCTGCTACGTATATTTATTAGGGTTTTCTTAAATGGTCTTTTCCCAAGCATTAGTGACAAATTTCCGAGGTGTAATGATTAAGATAGCCCAGTTGATGAGTATCAGTTGAGGGGTAGTCACCATGAGCATCGTTGGTTGTGTTAATATCAAATCCAAGCATATCGATCGAACATGTCAGATGGTCTCGTAAGCCAAGTTTTACTCAGGGCGAGTTTTGCGTCAATAAAAATCCTTTTAGAATCATAACGTAATGAGCTATTGGATTACATCAGCTTCCATGTCTTAAGTGGAGGTTATATTCTAGATTATTTTCAATTGCCGAGTACCAGTCACAGATAGGCTACCTTTGGCGGCCTCTTCTATATGTCCGCTCCACCAGCTCATCATTGGCTTTCTGCGTTCTAAGTAGTCAGTGCGGTTATAGGCGCTACGCACTTGGTTGTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //