Array 1 1-1108 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUTJ01000018.1 Pseudoalteromonas sp. TB13 ctg18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1 28 100.0 32 ............................ TCACAACACTAATCATTGGATGGCAAGATAAC 61 28 100.0 32 ............................ TTCGGCACGCATTAAATCATCACTATCAAATA 121 28 100.0 32 ............................ ATCAAGATGCCGAGTAATTACAGTTCTAGGTT 181 28 100.0 32 ............................ CTATAAAAAATGCAGGGTGACACAAGAAGGAA 241 28 100.0 32 ............................ GATACACCATTAAAACCAACGCGCAGCATGTC 301 28 100.0 32 ............................ CTTAGCCAAGAGCAAGGTGGCCAAGAGCCAGA 361 28 100.0 32 ............................ TTGAAACTAAATTCAGCAAGCCAGCAGAAAAA 421 28 100.0 32 ............................ TTATAAAACAAAATGCTATGTAATATTAAATA 481 28 96.4 32 .......A.................... AATGTATCAAGATCATTCAATGCTATTGAAAT 541 28 100.0 32 ............................ AAAGACTATTTTTGTATATGAGTTAAGTGATA 601 28 100.0 32 ............................ CCCAGAGGTGCAAAACTCCAACATTCTGACAA 661 28 100.0 32 ............................ TTACACAGTTAGCAGTACTGACAGCAGCATTA 721 28 100.0 32 ............................ TCTACTTCATGCTTAACTTGTACGCCGTTTCT 781 28 100.0 32 ............................ GTGTAGTGAGTTGAATTGTCAGTGATTGAAGA 841 28 100.0 32 ............................ ATCTAGCATTAAATCAATTGAGTGTGTATCTG 901 28 100.0 32 ............................ ATCATCTAAGCGATTAGCGAAATACTCACCCA 961 28 100.0 32 ............................ ATTCACGGCACGCACCGTAGAAATATCATTTA 1021 28 100.0 30 ............................ ATTGAGTTCACTTAGGGTCCTCAACAACAA 1079 28 75.0 0 .C....A..T...T.T..........GG | T,G [1083,1102] ========== ====== ====== ====== ============================ ================================ ================== 19 28 98.5 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : | # Right flank : GTCAATTAACTTGCTCTCTAACTTACTCAATAAACATAGTTACTAATCGAAATATAATGGCAAGCACACCCGGCAATTACAAACAAATGCCAAATTGCATGGCTAAACTGGGTGCTTTTAGCACTGTAAAAAAAAGTGCCTAAACTATAAAAAATACCGCCGGCAAGTAGCCAGTAAAGTGCTTTTACATCAACACTTGAATAAAGCGGATATACAATAGCCAGTGCAAACCAACCCATGAGTAAGTAGGTGGCGAGTGATATTTTTTTATTACCGTTTTTTACAAATACTTTGTACGCAACGCCCGCCAGTGCCACAGTCCATATAAATGTAAGTGTTGCCCATGACCAAGCACCGGTTAATGAGATTAATAAAAAGGGAGTGTAGGTGCCGGCAATTAATAAGTATATGGCGCAGTGATCGCACTTTTTATAAAAGGCTCTTAAGCGCGGTTGAATACTGGCATGGTACAAAGTGGACGACAAAAACAGTACAAATAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1591-2 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUTJ01000015.1 Pseudoalteromonas sp. TB13 ctg15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1590 28 100.0 32 ............................ TGACGAACAATTAAACTTAATGGCCGACACGT 1530 28 100.0 32 ............................ AGTTAGCCGAAATCTACGCTTTTAAAAAGCTG 1470 28 100.0 32 ............................ AGTAATGGCGCGCGTGTAATCTTTGGCCGTTG 1410 28 100.0 32 ............................ GTTTAGCAGTGCGCCCGTTGGCGGCTCAATAC 1350 28 100.0 33 ............................ GTTATAGATAAAGCAGGAAGAGCACTGTTTGCT 1289 28 100.0 32 ............................ GTTAACCAAAGGTACTACGCTTGCGCCTAGCA 1229 28 100.0 32 ............................ TGCATAGAAACGTACTGGCTTACGGTATTGAC 1169 28 100.0 32 ............................ TCTAAAGCTTCTTGAAAGTGTGGGCAATTCTC 1109 28 100.0 32 ............................ CTTCTGTTGAGAAAGGATCTAATCCTACTTGG 1049 28 100.0 32 ............................ TTTAACCACGCTAACATTTATATTTGGATTTG 989 28 100.0 32 ............................ TTTTGCGTTTACATCATCCACTTTAGATGCGT 929 28 100.0 32 ............................ ATCAGGGCCAACGATACCCACAGGATCTTCAT 869 28 100.0 32 ............................ AATTGTAGGCCCATTTGCTGCGCCTGCAGCAA 809 28 100.0 32 ............................ TATTATTAATGGTCGACTTACGTTAATCATAG 749 28 100.0 32 ............................ TCTTTTAACAATTCCATAGGGTTACTGTTTGT 689 28 100.0 32 ............................ AATTATGTATTGAATAAGCTCTATCTAAAAAA 629 28 100.0 32 ............................ AGTAATAAATCAGAGCGCCAACGGCGGCTATT 569 28 100.0 32 ............................ ATGTTAAACAACATAGGGCGCGCGTTTAAGAT 509 28 100.0 32 ............................ TTGTTTGCATTTGTGTTGGTCGTTATCTAGTG 449 28 100.0 32 ............................ TTCAATTAAGTGGTTCATTGCTTTTACTAGGT 389 28 100.0 32 ............................ TTTCATTGTTTTTAAGCTCACGCCCCAACCTA 329 28 100.0 32 ............................ CTGATTCGTAAATTGATTCTTTTTTTATTGGC 269 28 100.0 32 ............................ ATTTATTAAAAGGTAAGTGCCATGAGTGCCAT 209 28 100.0 32 ............................ TTCTAAATTAATTTCTCCACCCATATCAAAGC 149 28 100.0 32 ............................ ATATCAACTCGTTTTCACACGTATAATTATTA 89 28 100.0 32 ............................ TCACAACACTAATCATTGGATGGCAAGATAAC 29 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 27 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AGGATTGTAGTGGTTTTGTATCAAGTAAAGCTAACAGAAAGTGCCAATAAAGATTTAGAGATTATATATCTACATTATTTGAATCGTGTGAATGATCAGCTAGCTAATAAATTATTAGCTGAAATAGAAGAAGCGATAGATGTATTAGCGACACAACCATTGCTGGGTCATTTACCGAAAGAACTAACATTAACTGATGAAGATTGTTTAGAGTTGCTCACTAAATCATTTCGACTTATATACCGCATAGATAATACACAAGTGTTCATTATGATGATTTTGCATCAAAAGCAAAGTGTTGGAAAAGCCGCCGCTGCACGTTCATTACATTAAGCTATCAATTTAAGAAAGGTTAACTACTTAGTATTTACCCTAAAAAATCGCTCTTTAAAAATTAGTAAAATAAACAACAAGTTATAAACACAGTAAAAATAAAGGTCAAAAGTTGATTTTTATAATCAACTGTTTGTTGTAACTTGTTTTTTTGCTGTTATTCTATT # Right flank : AT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [1.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //