Array 1 65033-64029 **** Predicted by CRISPRDetect 2.4 *** >NZ_AIBI01000199.1 Escherichia coli C652_10 C652_10_200, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 65032 29 100.0 32 ............................. TTGTGCGAACCTCAGTTATTGTGCCCTGACGA 64971 29 100.0 32 ............................. AATTTATTCGGTTTATTCCGTCGGCGCGCGAC 64910 29 100.0 32 ............................. GGGATTTGCACTCCAGTTGATTGACCCGCAGC 64849 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 64788 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 64727 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 64666 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 64605 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 64544 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 64483 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 64422 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 64361 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 64301 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 64240 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 64179 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 64118 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 64057 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 91919-90731 **** Predicted by CRISPRDetect 2.4 *** >NZ_AIBI01000199.1 Escherichia coli C652_10 C652_10_200, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 91918 29 100.0 32 ............................. GCATTACGGTAAATCGCTGGGGCTGTCCCGTA 91857 29 100.0 32 ............................. CTGGGGCTGCACATTGACAATAAACCGCCGCC 91796 29 100.0 32 ............................. ACTTGATTACCGCTATTTTCTGACGATTTAAT 91735 29 100.0 32 ............................. CCTGATAATTTACGCTATTCAGCGGAGATGAT 91674 29 100.0 32 ............................. TGGCTATAGTATCATATGATTTCTATTTGTCA 91613 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 91552 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 91491 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 91430 29 100.0 32 ............................. CCGCCGATTTCCCTGGCGTCAAAAGCGGTGAG 91369 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 91308 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 91247 29 100.0 32 ............................. GCAAATTAAGCTGGCTGGCAATCTCTTTCGGG 91186 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 91125 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 91064 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 91003 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 90942 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 90881 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 90820 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 90759 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATGGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //