Array 1 535615-534363 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRZE01000006.1 Saccharomonospora viridis strain JCM 3315 MINT15_06, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 535614 29 100.0 32 ............................. TCGATTGGCGATCTCGTCGCGTTCTGTGATCA 535553 29 100.0 32 ............................. ATTGACGAGGCGAACAACAGGGCAAGCGTGAC 535492 29 96.6 33 ............................A GTGACCCCGGCCCCGCGGGGTTCTGGCACCCTC 535430 29 100.0 32 ............................. TTGTTTTCGGAGCTGATCGGTACACGCACCGA 535369 29 100.0 32 ............................. CTGGCCGAGAATCTGGATCGGCACGAGCACGA 535308 29 100.0 32 ............................. CTTTCTGAGAGTGCCGTACGTGTAAAGGGGCT 535247 29 100.0 32 ............................. GCTCCAGACTGGCGCCCCGGAGCGGTGCGCGT 535186 29 100.0 32 ............................. GCCGGCGGCCCGGCACCCCCGAGGGGCCCCAC 535125 29 100.0 32 ............................. CCTGAGCTCGGGCGGGCCTACGACGCGCAGCG 535064 29 100.0 32 ............................. CGACCGGTCGGTGATGGCCTCCCGCAGCTCGG 535003 29 100.0 32 ............................. TTGGTACGCGAGGGTGCCCACATTCGGGCCTC 534942 29 100.0 32 ............................. CACCATCAGCGCAGCCCTGCACCAGGCGACCT 534881 29 100.0 33 ............................. ACAGCGAGGACAGCGGCCCGACGGATGTTGTGC 534819 29 100.0 32 ............................. AGGAGGCGGCCGCCATCGCGCGGCGGATCGAT 534758 29 100.0 32 ............................. GACGCCGCCGACGCCGCGATACCGGTGGCCGC 534697 29 100.0 32 ............................. ATGTCTTTCGTCGGTTCCTGGATCAGCCCGAC 534636 29 100.0 32 ............................. TCGTCTGGTACACGGTGGAGAGGGTGGACGGC 534575 29 100.0 32 ............................. AGAGTCTCGATCTCGTACAAAGTCCCCTCCAA 534514 29 100.0 32 ............................. GTGGGAATGTCTACCAACCCCCGGCGGCGGGT 534453 29 100.0 32 ............................. TCAACATGAGTCATGCTGTCGCTCCGCCATCC 534392 29 93.1 0 ........................A...C | T [534365] ========== ====== ====== ====== ============================= ================================= ================== 21 29 99.5 32 GTGCTCTCCACGCACGTGGAGGTGGTCCG # Left flank : TCGGAAGCCATATGTGGGAAGCCTCCTCATGCCTGCACCGCCGTCCTGTCGAATCCGGCAGATATCCTTCCGGGACACCGACCTGCTCCTGGAATCCCGGGGTCAGTTTGCCGACGTCATGCGCAGCGGCCCAGAACTCCAGGACACGGCACGTCTGCTCCTCGGTCAAGCCCACGGCTTCGGCCAACCCCGCCCGAACACGCGCGGACAGGTATCGCTTCCACAACCAGCGCACCGCAGCAGCCGCATCGAGGCCATGGCATACCAGCGGGTACCGAGCCCCCTCCAGCCCCCGTTCTTTCCCCCAGAAACGGAGATCGACCAGCAACACATCCCCCAGAGCAAGCTCTACACTCAAACCTGCACGAACACAGTCCCGCTGCGTTCGTGCCGACACGGTAGCGATCCACACCGACAAAATTGAGCAGATGCACCCCACCCCTTCGACGACACGCGACAAAAACGTGCAAACGACGAACTAAAGTCGCAGGTCACGAAGG # Right flank : CCGTGATGTAGCGGTCAGGGGATCCCACTTCACAACAGATGGTCAAGAACTTCAGCGTCACGGTCACCTTCTCCACAGGCTGACGTAGTTATCCCTCAAACCAGCAGGAATCAGGGCGGGCGCGGCAACTGCGATCAGAGTGACAACACCCGGTCCGGCTGATGTCGGCCGCGAAGCCTCGGCATCCGGCGACAACGATGGGTGATACAAATTCCATCAACTCTGCTTGGCCGGCGTGTTCGTACGGGGATCAGTTGCGTTTCCGATCGATGCGTCGTCATGCTCAAGCTTCAACCGCATCCATTACTCCGCGGAACAGACGGTGAGCGCGAAGCGGATCGAGTTCCGTGGCGTGATTGTTCGTATAGATCCGTGAGGGCATTTCGACACTTTTGACCGAACCGAGCCCCACCGCCCTGTTCAGGACTCGCCGTGGTGTTGGAGTGCCGGAGGTAACTCGCGGGACTACTCGCCCAGCACCATTGAGGTGGGCGAGACGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCACGCACGTGGAGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCTCCACGCACGTGGAGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 544995-545816 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRZE01000006.1 Saccharomonospora viridis strain JCM 3315 MINT15_06, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 544995 29 100.0 32 ............................. ATCGCGCATGGTGATCGTCGTGATGAGGCGTG 545056 29 100.0 32 ............................. TTGTGACCCGATGATACCGGGACAGGCCGACG 545117 29 100.0 32 ............................. TTGTGACCCGATGATACCGGGACAGGCCGACG 545178 29 100.0 32 ............................. GCGTTCCGGCGCATCGACCGGCACGGCCGCGT 545239 29 100.0 32 ............................. AGGCCGGCGGTTTCGTCGACGCGGTCGGCGGC 545300 29 100.0 32 ............................. CTGCGTCCTCGCTGGAGTCCTACGCCGCCACC 545361 29 100.0 32 ............................. CCTCCGGGGCTGTACACAGCTCCACGGAGCTC 545422 29 100.0 32 ............................. GGGTGAGGGGCCGAAGATGGCAGCGAAACCGC 545483 29 100.0 32 ............................. CGATTCGTTTTCGCCGTCCGCGTCGACGCCGA 545544 29 100.0 32 ............................. GCCGCGCTGGCGTGGATTGTGGAGGGTGCCAT 545605 29 100.0 32 ............................. TCCACACACGAACCCGAGCCGGAGACAACCCG 545666 29 100.0 32 ............................. CCCTTGTAGTTCCGGACCGCCGCGTTCTGCGC 545727 29 100.0 32 ............................. TCGACGAGTACGGGATCACCGAGCGAACCAGC 545788 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 14 29 100.0 32 GTGCTCTCCACGCACGTGGAGGTGGTCCG # Left flank : GACGTCCAGCGACTCCTCGACCCTTCCATCGCCCAGGATCACGACGAGACGGGAGAGCCGGAGGAAGTCGAGCTCGTGCATTTGTGGGACCCTGATCTCGGTGCGGTCGAAGCCGGGGTCAACCATGGCTGGGACTGGGAGGATTGAGCCTGATGCCCAATCTTGTCGTGATCTCCACGACCGCTGTGCCGGATTATGTGCGCGGTTCATTGAGCCGCTGGTTGACCGAGCCGGCTCCAGGCCTCTACGTCGGGTCGATATCCGCTCGGGTGCGTGACTCTCTGTGGGAGCAGGTCAGCGCGGCCGTCGGAGAGGGGGCCGCGGTGTGCGTTCACCCCACCGACAACGAGCAACGCTACGTCATCAAGACCGCAGGCGAACGACGCCGCCGAGTCATGGACTTCGACGGCCTGCAACTCATCGCCTTCCGTGACCTGAACCCGCTGGGGCAAGGGAACCAAAACGAACAACCGCCCTTCTAAAACCGCAGGTCGCGAAGG # Right flank : GCAGCCTGTAACCCCCCAATGTCTCAGTGTCTGGGGGCCGGGCCATAGGATGCGCCCTTTATGTGCGATCCCTCGGTACCGGTAAAGTCACGCTGAGGACAAACGAGGGAGTCAAGATGCGAACCGGCCTGTCCAGGGAAGAGATTATCCGGCTGTTAGAGCGAGGTTTCACTCGCTCGGAGATCGCCGCAACTTACGGCGTCACCCCGCAGGCTGTCAACTGGCACCTAAATGAGAAGGGACCGAAATACAAGGACCCTCGGCAGCGCGCAATGGAGCACCTGCCGTGGAAGGTCGAAAGCCGTCACAAGAATGGCGCGCCCTTTCAGAAGCTCCGCATGCACATTAAGTACGTCGCTCTCGGGGAACAGAAGCTTTCGGATTCTGAGAAAAAGCGACTTCGGAATTGGTACGCCGAGCTGCAAAGGCTCAACGTCGTTCTGGAGTACGACCCGAACATCCCGCCGACACTCCACATGTCGACGGGCGGCTGGCGTTAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCACGCACGTGGAGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTCCACGCACGTGGAGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [40.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 546672-546883 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRZE01000006.1 Saccharomonospora viridis strain JCM 3315 MINT15_06, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 546672 29 100.0 32 ............................. TTCCCATCCACAACGCGCTCAACTGTCTCAGG 546733 29 100.0 32 ............................. CGGTGCTGGCGGCATGCGACCAGCTCCGCTTC 546794 29 100.0 32 ............................. TGAATAGCGAGTACGCAGAGACGGAGGTTGCC 546855 29 96.6 0 ...........................T. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 99.2 32 GTGCTCTCCACGCACGTGGAGGTGGTCCG # Left flank : GCTCTCGGGGAACAGAAGCTTTCGGATTCTGAGAAAAAGCGACTTCGGAATTGGTACGCCGAGCTGCAAAGGCTCAACGTCGTTCTGGAGTACGACCCGAACATCCCGCCGACACTCCACATGTCGACGGGCGGCTGGCGTTACGTACCGCGCGCGGACAGTGACGAGGGGCTTGTCATCCGGGTGAACGAACATGCACGGATGACTGACGAAGCCTACGAGTACCTACGCTTCCCGGAGAAATGGCCGGAGGCGTGAACAGCAGAACAGGAGTTCCGCCTTATGCGTGGAGGCATCACCCACGTCGTCAATAGCCCGACCCTGCTCGAAGCAGCAGTCTCCCCAACGACCGGGGGGCGGCTGCTGCGGATATACCGCAGCTTGATCGTCTCAGCGAACGGACGACTTTTCCGTCCTGTGAAAGATTTGCTCGACCAAAGTTGTCTGTCCGAGGGGATCACTCGAAAGTGTGATGACGAGGACATGGCCGGAGGGGCGGC # Right flank : GGTGTGGCAAGTCTGGGCGGCGTGGCGGGTCCAGTTCGATGCACAGCTTGAGCGTTCAGCCCTTATCGTTGCGGCCATCGGTCAGCGGACGCCGTCGTGTGCGATGGGTTCCTCAGGCAATCCTGCCCACGTCGCCCCTGCGACAGACGGTGGTCGAGGAACCTGCCCATGCACCCGCCTGGCTTTGCATGCCCACGTGGCCTCCCGGGCTCATGAGAGCAACGCGGTAATCGTCCCAGGCCTGGGGAAGGTGCGTGAACGTTCGCCTGGGCGTTGAGAACATCCGACAGCACCTCACGGCGACGTCGCGCTCCCGACTACCACGACACTCCCCGGCAGGGCGCGAGCGGTCAGCACCGATCGTGTCGGTCCCACGCCGTACGCTAACGCCGCGATGGCTACACGAGGCATAGAAGGCGCGTACCAGGGTGCCCTGCGAGCGTTCCAGAACCCCATGCTCGCCCTCCTCCATCAAACACACGCGCCGTTCGTGGTGACGG # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCACGCACGTGGAGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTCCACGCACGTGGAGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 557534-557202 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRZE01000006.1 Saccharomonospora viridis strain JCM 3315 MINT15_06, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 557533 29 100.0 32 ............................. CTCTCGGGCGGGGCTTTTCTCTTTCGGGCGCG 557472 29 96.6 32 ............................T TTCCTTGCTCACGGTTTCCTCCAGGTCACTGG 557411 29 100.0 32 ............................. GAGGAGACGGCCGAGTTCCTCGACGCCCTGGT 557350 29 96.6 32 ............................G TTGCGCGAGCAGATCGACGCGGCATTCCCGAA 557289 29 96.6 32 .......T..................... CCTCTCCTTCACGCCGGGGGCCGACATGTCGA 557228 27 82.8 0 .....T..T..........--.......T | ========== ====== ====== ====== ============================= ================================ ================== 6 29 95.4 32 GTCGGCCCCGCGCACGCGGGGATGGTCCC # Left flank : AACTGGTCCGATGACTTCGATTTCCCGGTGATCGACCCCAGCATGGACCAAACCCACATCTCTGTGATCGGTCCCGAATTCGACACACCCACCACCGAGGCCGGGGAGTCATGACCGTCATCGTGCTCATCGCTGCCCCCGAAGGCCTCCGTGGCCACCTCACTCGGTGGATGGTCGAAGTCCACGCGGGCGTCTTCGTGGGCAACCCCAGCCGGCGAGTCCGGGACCGGCTCTGGGAGCTGTTGGCAACCCGAATAGCCGACGGCCAAGCCATCCTCGTGGAACCGGCCGATAACGAACAGGGTTGGGCCGTCCGCACCGCAGGAACCGACCGTTGGCGGCCCACCGACTTCGACGGACTCATCCTCTCAGCCCGGCCCCGCCGCCACTGACTTCCCGGAGGAAAGCGAGGTGCGAACCCCACCCTGTCGCATCATGCAGCCATGAACGTACTGAATGAAATTAACGGCTTGCCTCGTTAAAATCCCAGCTCAACAAGT # Right flank : GCACCGGTTTCGTCCTCGCGAAGCTGCGTGCGCATGGACGTCACTGCTTGCGACGTCCTCGTATCGCCGTCGCGCTCACCTGTCAGCCGGTGCCTGCGACGCCGCTGAGCTTCAATCACCGCATGGTTCGCTTCTACCTCGACGAACTCGCTCATTAAAGGAAGGTCGGCATCCGGCGGGCAGATCAACAATGCTCCGCTGCCGTCACCCACACTCCGCTGTTCGTCCGCGGCGCTTATGGCGGTGTCGAAGACAGCCGTCGAGGTTGTCGGACTGATTCTCGCCCGTGGACCCCGGAACCGGGACATTGCCGGAACACGGTCGCTTCCGGACTGGCCGTCACGCCGTTGTTCCCGGCGGATAAAGGCGAGAAGCTGGTCGAGCAGCCAGCTTCGAGACCGTCACTTTCCTCGCGGGCCCCACCTGCGGGGTCAACAGTCAGGCGACCTTCGCCAACGACGGCATGGCAAGGGGCTGAGAAGCTGCGCACTGTCACCAGG # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 567140-567473 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRZE01000006.1 Saccharomonospora viridis strain JCM 3315 MINT15_06, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 567140 29 96.6 32 ............................C AGATGTCTGTCGACCTCGCCCACATCAGGGCC 567201 29 100.0 32 ............................. GTGGTTGTCGAAGTCCTCAGAGAGAGTGGATG 567262 29 100.0 32 ............................. CGATCGAATGTCGGCTGATCCAGTAGCCGCCA 567323 29 93.1 32 ....................A.......G GACCCAAACGTGGATCGCCTCGTTGGAGCGCA 567384 29 96.6 32 ............................G TGTCAACGGGTGAGCGCGGGCAAGCTGATGCG 567445 29 96.6 0 ..........................G.. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 97.2 32 GTCGGCCCCGCGCACGCGGGGATGGTCCT # Left flank : CGATCCCATTGCAGTCCCGCATCCCATACGAGCCGCGCACAGTCTTCGTCCACGAACTGGAAGGCGGGTACCGCTTTTCCACAATCGTGGACACCGCAGAGCCAAGCGAAAAACGGCCTACCCTTACCCGGACCTCCCGCGATCTCGTCGACCGAGCGGCGCGTCACGGGGGCCAAGAACCGGTCCCACAGGCATTCGGCCACCGCAGCGGTATCCAACATGTGCGCCAACAACAGGTTCCGGCGCCCACCGCCCCGCGAGGCCGACTTCCCCCACAACGCTTCCAGCCATCGCTGTTCCGAAGGATCAGCCACAACCACGTACTGGCCCCCTGCGTTGTCAACCGACGGACATCGGGCACCGTAGAGGACACCGCCGACAATTTCCGGAACATGCGGAAATTGACTCCTCTCGGAGGAGGGATGAGCACTCCCCGCTCACTCTGTGTCAGACTGAATGAAAACCGCTCGTTGGCCGGGTAAACGCCCAGGTCAACAAGT # Right flank : TACCGGTACGGCGACATCCTCATCCCGCATTGGCACGCGCTGCCGTGGTCGTCCCCCGGCACCTGCTCGCGCCCACCGCCTACGACCAAACAGTGGTGCCATGGGACCATCACCACCGAGCTTGTGTGGTCTATTCGCCGATCACCCTTGCCGCCGAGATCGAGGCGGCAGGGCGGGCAGTGTCGTCGTCGACGAGACCCGACCTCATGACCCGCATGCTGGAAATTCTGCCCCGCTCGGTGATCGGTGTTCGAGGTCGGCATCGGCTACAACACGGCCCTGCTCACGCACATCCTCGGCGCGAGAGCATGTCTCCTCGGTCGACATCCGACTCGAGCCCGTCGGCGCCACGTGGCCACTGGTTGCGGGTGAGGACTGAAACAGTGCGAATGACAAACGACCCCCGGCGCGGGTGTGTCGGGGGTCGTTCGGTTGTGTCAGCGGTCGATCAGACGTCGAACTCGCCAGCTTTCACGCCAGCGACGAACGCGCGCCACTCG # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCACGCGGGGATGGTCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 568769-569342 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRZE01000006.1 Saccharomonospora viridis strain JCM 3315 MINT15_06, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 568769 29 100.0 32 ............................. AGGTGCCGCACGGTGGTCTGCAGCGCCTCGCC 568830 29 100.0 32 ............................. GTCGACCACCACCGCCCCAACGCAGGAACGCC 568891 29 100.0 32 ............................. AGAGGACATGTCCCCTCCTTCAGTTGGGGCGG 568952 29 100.0 32 ............................. CGGGCGGTGGAGCTGCTGCATGCCCCCGACCC 569013 29 96.6 31 ............................G GACCGGCGCACTCACCGCATGGTCGGTGTCA 569073 29 96.6 32 ............................T CCAGTCGACGCACGCAGGAAACGCTAGATCTG 569134 29 100.0 32 ............................. CGGTCGTGGTGGGTCAGGGCGTCGGTCAGGCA 569195 29 96.6 30 ............................G GGTCGCTCGTCAGACCCTCGCCCGCTGGGG 569254 29 100.0 32 ............................. TGCCACAGGTGAATGTTCACGGCGCGCGCCTG 569315 28 86.2 0 .....................-..A.TA. | ========== ====== ====== ====== ============================= ================================ ================== 10 29 97.6 32 GTCGGCCCCGCGCACGCGGGGATAGTCCC # Left flank : TCGATATGCACGATCGACGGAGAGTCGGCGAAGTCGAACAGGATGAAAGGACCGGACAGGCCAGGATGCCATCCACTGTCTGTCGGCACTACCTGCACGGTGACCGACTCGGAGTCGGTCATCTTCAGCACGTGTCGTAGCTGGTCAGCCATCACCTCGGGGCCGCCGATCGGGTTATGTAGAGCGGCTTCGCCGATCAGACCCGTGAACACCGCTGGTCGGCTACGGGTGATCACATCCCGTCGTGCCATTCGCATCATTACGCGCGGCTCGACCTCCCGCGCTGGGAGATCACCATTCGCCAGGATCGCGCGAGCGTAGTCGGACGTTTGCAGCAGCCCTGGCACCAGTAGCGGCGACCAGTCGGTGTTATGTCTGCCGGACACGTGGCGGTGGCCCCCGAGCGGATCGAGCAGCGACGAATTGGTAACCCCTGCCCACTCTGTGTCAGACTGAATGAGAATCGCACGGAAGCCGGGTAAACGCCCAGGTCAACAAGT # Right flank : CCGTGGCTTCTCGGCTTCACCAACAACTTAAAGCTCCAGCCAGATGATGTCGTCAGGCTTACGGGACTGTCTAATGACGGGCGGCTACCCGCACTCGGCCCCGTAGTTCGCGGATGTGAACGCCTCTATGGCCGCCTTTGACACGGCATAGGTGACGGGGGACGGCAGCTGGGCTCGGATGAGGGTATGGAGAGCATCCATCGCCAGGATGCTCGGCGTCCGTCGTGGTCCGGACGGTTCACGACCACCGTGAAGTGGGTCCGAGCCGACCCCGGGACAGTGCGCCGGTGGCAGTGGGTATTCGCTTCCGGAATCGACTGTCCGGCGGAACTAGAGGTGTGTGAGTCCCCTCCATGGGCAGCCCGACGAAGTGGCGCATGTTGGCCTCCAAGCACGCGGCCTGCGTGCTTGGAGGTGCAGCTCCGCCCACTCGCTGCCGTCGCCGTAGTCGATGGCTGTGTGTGGAATTCCGGCCGCGACGAGGTGGTCACGGGGGACGA # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCACGCGGGGATAGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 7 1013403-1014103 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRZE01000006.1 Saccharomonospora viridis strain JCM 3315 MINT15_06, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1013403 29 96.6 32 ............................T TTCCGCGCGACTTCCTCGCTCGGTGACATGCC 1013464 29 96.6 32 ............................C TGGGGAGGTCAAGTGTCGATCGGAGTCTGGCG 1013525 29 96.6 32 ............................C TCGCGAAAACAGGGCTGGTGTCGGCGGCGGTG 1013586 29 100.0 32 ............................. AACAGCTCGTCGTCCCGCTCAGCCTTGATGAT 1013647 29 100.0 32 ............................. CTGCCGAGGCCGCTAGCGCGGCTGCCACGTCG 1013708 29 93.1 32 ....................T.......T TTCGGCAACGTCTCCGTCAGCGGGCACGGCAA 1013769 29 100.0 32 ............................. CAATCGGATTGCGTCCTCGCGATCCTTCGCGA 1013830 29 100.0 32 ............................. TTGACGCGGGTGGTATCGGCGGTGGATCGTCC 1013891 29 96.6 32 ............................C TCCATGCCGCCCTTGGGATCGATCACCCACAG 1013952 29 93.1 32 .................C..........C CATCGGGATGCGGGTGGTGCTCGGGTCGAGCG 1014013 29 93.1 32 ..............T.............C GGGAGTGGAACCCCGGTTTTCACGAAGGCCCC 1014074 29 96.6 0 .........................A... | A [1014097] ========== ====== ====== ====== ============================= ================================ ================== 12 29 96.9 32 GTCGGCCCCGCGCACGCGGGGATAGTCCG # Left flank : CCTGCCGCTGTGCGCGCCGTTCCTCGGCCACCAGAACAGCTTGCCGGCTAAGTGCAGGAGGAACATCAACGTCAGCCCGCTACCCGATGACGCCGACGAAGAGGAGGAAGCGCCGCCGGAAGGTTGACACAACCCGGCGATGTCATGAACCGGCGACGCACCCTGCCGAAGCGGATATACGGCCGTCCATCCCGGCATTCGACCACCACAGCGGTATCCAACATGCGAGCCAACAACAAGTTCCGGTGCCCACCACTTGGCGACGCCGACTTCCCCTACAACACTTCCCACCAGCGCGGCTTCGAGGGGAGCAGCACAACCACGTACTGGCCCCTACGTCGGCATCCGACGGACATCGGGCACCGTAGAGGACACCACCGACGATTCCCGAAACATGCGGAAACTGCCTTCCCGGAGACCGGATGACCACGCCCTACCCACTCTGTGTCAGACTGAATGAAAATCGCTCATTGGCCGGGTAAAAGCCCAGGTCAACAAGT # Right flank : GCGTGTGACACGTGGCGCGGCCCTCGGTGGCGTCACCACGGATGAGAGCTGTATCAGTCCGAGAACGTCAAACGGGCCCCGACGTTGGTGCGCCGGAGGCCCGTTTGGATATGTGAACGGGTCGATCAGATGTCGAATTCGCCCGCCTTCACACCGGCGACGAATGCTCTCCATTCGCTATCGGTATAGCGGATAATCGCGTCGTTAGGCCGCTTGCTGTTGCGCACCTCCACACCGCCCTCGACGCGACGGAACTCCACGCAGTTGGTCTCCTTACCGGAGAAGCTGGACTTGCGCCAACCGTTGTCTTCGCGCTGTACGGTCATTCTGTAGTCTCCACCTTGTCGATGACATCCGCGATGAACCTAATTGAGTCGGTTGGGCTCATCGCCATCCGGTCAAGCTCCGCCCGCGCTTCCTTGTACACCTCAACGTCATCCGCATCCCGCAAGAACACGCTCGACCGCAGGTGTTCCAAGTGGACCACGGGTGCCGCCCTG # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.54, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCACGCGGGGATAGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 8 1016466-1016980 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRZE01000006.1 Saccharomonospora viridis strain JCM 3315 MINT15_06, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1016466 28 100.0 33 ............................ GCCTGCGGAGCGGCAGACCTGGCAGATTTCGTT 1016527 28 100.0 33 ............................ CAGGTCCAGTACCTCGGCTCGGATCGCGGCGAG 1016588 28 100.0 34 ............................ CGTGGGGCAAGCTCAGCTTGCTGCCGTATTCGTC 1016650 28 100.0 34 ............................ AGCTGTCATCAGAGGGACGATGTAGGCAATCCCC 1016712 28 100.0 33 ............................ GTCGTGCCCGAATGTGTTGCCGGTCCGGGGGTT 1016773 28 100.0 30 ............................ TGCAAGGGTGCGCGTGAGCGCATCGCCGAG 1016831 28 100.0 33 ............................ ACAGGGGCTATCGGGAGCGCGGTCCGCTGGGTG 1016892 28 100.0 33 ............................ CTTGGCCCTCAGCATCGCGACCACCTCAGCGGC 1016953 28 96.4 0 ...................A........ | ========== ====== ====== ====== ============================ ================================== ================== 9 28 99.6 33 GTCGGCCCCGCACACGCGGGGATAGACC # Left flank : GCGCCCTGTGCGGCACCGAGCCCGTCGCCTGTCCCCATGCTGAGGCATGGATGGTCGAAAGCCACTTTTGCGTCGACTGCATCGACCACTGCCTCAGCGATGCCCGCCACGGCCACTGGTGCCCCGTTGATGCCTTCGCCCACGCCCAGGAGACAGGTTCCCGAGGTCGCGGCGATGCATGACTCACCGGTCGCCGTGTCCACCCCACCGCCCGAGACCGAGGCCGAGCGGACCGCACGGCTCCGGCTACCGGATACTTGGCAGTGGCCCGACCGTGACCTCGATCCCCCACCCGAGTACGTGACCGTCGAAGCCCACGCGGTACTGCACCGGTGTAAGGAGTCAACCCTGCCGATCCTGCACGCCATCCTCACCGAACTACGACGACAACTCCCCCACACGGCCCCAAAGACACCGGGGAGTGGAAGGAATTCCCTCCTGCCGGTGGCAGACTGAATGAAAACCACTTGCTGCCCGAATAAACTCCCAGGTCAGCAAGT # Right flank : CACGGCCCCCCCGCACCGCATGGTGTCGGGGGCCGTTTCACGTGTTCAGTTGCGTACTTTCCGCTACGCTCTCAGATGATTCTCTTCGCGGATATCGTGCCCCCGGACTAGGCCCCGGGGGGCTTTCGCGAAGAGGGCACGACTCCGCGGAGGGTGTGGGTGTGATGACGCCGCAGCCAGACGCCGACCTGCCCATCGGTCGGCGAATCCAGCGCTACCGCGAACGCGCCGGCATGTCCCGCCCGGTACTGGCTGGGCTCGTCGGCCGCTCGACCGAGTGGGTCAAGGCTGTCGAGACGGGACGGTTGCAGGTGCCGAAGCTTCCGATGCTGCTCAAGCTCGCCCAGGCTCTCGGCCTTGAGGACCTCGCTGATCTCACGGGAAACGGCCACGCCGTGTCGGTCGAGCGGTTCGCAGGCTCCCGACATGCCGCACTGTCGGCCGTGCAGACCGCATTGACGCAGTACCGCATGACGCCTGCTGGTGATCCACCGAGCGTG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACACGCGGGGATAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 9 1019494-1019766 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRZE01000006.1 Saccharomonospora viridis strain JCM 3315 MINT15_06, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1019494 29 96.6 32 ............................C GTGCAACATTGTCTCTCCTTTCGCGGAGTGGC 1019555 29 96.6 32 ............................T TCGAGCTTGTCGCTCAACTACAACGATGGCGA 1019616 29 100.0 32 ............................. TCAGCGTGCTCATGCGGCCCTCCAGAACGTCG 1019677 29 100.0 32 ............................. AAGAGATGCGCGGCATCCTCAACGCTGGACAC 1019738 29 93.1 0 .......................G.A... | ========== ====== ====== ====== ============================= ================================ ================== 5 29 97.3 32 GTCGGCCCCGCGCACGCGGGGATAGTCCG # Left flank : CGGCAACTGCGCCCGCCTCCCGAACCCCTTCTTCCGGTCGGCGCGGGTCGAGTACCCCGAGCCCCTCACCAGCTCCCCGTGCCGACCGGACCCCACAACACAAAAGAGCCCCCACACGCTCAACCCAACCACCGCCAAATCTCGGAGAGCTACGGGGCTCTTCCCTTTCCGGGCCCCGGGGGATAGGCGTCCCGGGCCTCGCGTGCGTGGCGAAAGCCGCCTCTCAGCGACCAGCTCGCCGTCCCGGCCCAGTGGCACCCACCATCAGAGTCGACGCCGAGCTGGAACCACCGATTCAAAGAGCGACGAGCACCCTCAGCAAAAACACGCCCCGTTCAACCAACCACCTATCTGCACGAACACTCCAACCAGCCCCATACCCTGAGGAGGCGGTGGTCCTCGAACAGGTCGGAAGGTAAGGGATGAGCAACCCCTGCCCGCCCCGTGTCAGACTGAATGAAAACCGGCCGTTGGTCGGGTAAACTCCCAGGTCAACAAGT # Right flank : GGGTTCGACACGTGGCGCGAACACTAAACGGGCCCCCAACACTTACGCCGGGGGCCCGTTTGGGTGGGTCAGCAGTCGAACCGGGAATTAGATGTCGAATTCGCCGTTTTTGACGCCCAGGATGAACGCCTTCCACTCGTCCATTGTGAACATGTGCTCCGGCTTTGTCCGGTCCTTGGTGTCTCGCAGGTGGACCATTTCGCCGTCGAAGCGGGTCTCCACGCAGTTGCCCTGGTTGCCGCTAAAGGACGACGTACGCCAGGTGTTGTCCATCATCAGGTACTCTCCACCTCATCGGATAGCTTCGCGATGAGCCCCTCTGTGGCGGCGGGGCTCATCGCCTGCCGGCGGATCGTATCCACCGCAGACATGTAGTCGCTCACGTCTCTGCGCTCGGTCAGAGTCGTGGCGGACCGGTAGTGCTCCAGCTGCACCACCGAGGGCCCTTTCTCGAACTCCAGCAGGATGAACGGTCCTTCGAGTGCGGGCGAGTAGCCTCC # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCACGCGGGGATAGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 10 1022132-1022892 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRZE01000006.1 Saccharomonospora viridis strain JCM 3315 MINT15_06, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1022132 29 96.6 32 ............................G CCGGTGTTCAGGTGGTAGGCGGGGTTGGTGCT 1022193 29 100.0 32 ............................. TGCTGATCGAGGACGGCATCCCGGTGCTGAAG 1022254 29 96.6 32 ............................T ACCGGTACAAGGGCAAGACGCAGCGGCCACCG 1022315 29 100.0 32 ............................. CTCGTCCAGCATTTGGGTGGCGATCCGCTCCA 1022376 29 96.6 32 ............................T ACGGGCGCTACATGGCCCCTGATCCTGCCGCC 1022437 29 100.0 32 ............................. ACCACCCCGGCCTCGAACAAGCGAGGGCGGTC 1022498 29 96.6 32 ............................G TTCGTTTGCGTGGGGGTCGCAAAGCACTAGGT 1022559 29 96.6 32 ............................G GTGAACCCACCCCTGCTGGCGGTAGTAGTTAT 1022620 29 100.0 32 ............................. CACTGTTGGCCAGTCCTGCGGCCTCGGTGACC 1022681 29 96.6 32 ............T................ GACTCGATGCCAGACCATCGCCATGGCGATTC 1022742 29 100.0 32 ............................. TCCCGGTTGGCTGCGTTGTGCGCCTCCATCGC 1022803 29 96.6 32 ............................T TCTTCCCGCAGGTCGCCATCTTTGGGCTTCCG 1022864 29 89.7 0 .........................TTT. | ========== ====== ====== ====== ============================= ================================ ================== 13 29 97.4 32 GTCGGCCCCGCGCACGCGGGGATGGACCC # Left flank : CGAGAACCGATTCTGCGCTGACTGCATCGACCACTGCCTCACCGACACCCACCACGACCACTGGTGCCCCATCGACACTTTCGCCCGAGCCCACGAAACACACCCCCAAAACAAGGCCCGTATCGATGTATGACTCACCCGTCGCCGTGTTCACCCCACCGCCCGAGACCGAGACCGAGCAGACCATGCAGCTCTGTCTGCCGGACGCCTGGCACCAGCCCGACCGCGACCCCGATCCCCCACCCAAGGACATGATCACCGAAGCCCACGCAGCACTACACCAGTACGACGAGCCAACCCCGCCAATCCTCCGGGCAGTCCTCAACGGACTACGACGGTAGCTCGTCCCATAGACCTGGTAGATGCGGGACGGAAGGAGCCCGCATCCTGACGCTGTGATCCCGAACGATCGAACAGCCACGAATGCGCACCCCGCCTGCCCCGTCGCCAAACTGAATGAGAACTGCCCATCGACCGGGTAAACTCCCAGGTCAACAAGT # Right flank : CTGGGTTCGCTGGCTCGATCAGCTTCGGACTCACGTTGGACGTGGCCACACGTCGTCCCACTGGGCGAGCTACCACGCCGACGGCGGGCCATGGTGCGAGGCCATCACGGCACGGTGACGGAAAGCGAACCCCGGCTATGAGCCGATATCGAAGGCGCCGCCAAGCCGTGGCGCGAGCTCGGCGAACCAACATGGGGCGGACGGGTCCAGTCCCACCGTCACACCCGACCGGAAGCCGGTGTGGTTCGACCACCCCGACGGCATCACGTGGCCATGACCACGGATGAGGACTGAACCAACGCGAACACCGAACAGGTCCCGGCACACCTACGCCGAGGCCTGTTCGGTTGCGTCGGTGGTTGATCAGATGTCGAATTCACCGTTCTCGACATCCGTAGCGAAGGGGCGCCACTCGCTTTCGGTATAGGCGACTGTGCCAGCGTCGGCCGCTTGCTGTTGCGCACCCCCACGCCTCTTCATCGATCGTATGAACGAAGCAA # Questionable array : NO Score: 5.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.62, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCACGCGGGGATGGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //