Array 1 141503-136453 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCZP01000003.1 Delftia acidovorans NBRC 14950, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================================================================================== ================== 141502 32 100.0 33 ................................ CTCAAAGCTGGTCAGGTAGTCATCGGCGGTGCC 141437 32 100.0 34 ................................ TCTGGAAGCTTGATCGCATCGCTCGGAGTCTTCA 141371 32 100.0 34 ................................ ACCAGCGCTGATGCTGCTTGTGCGGCTGGCTTGC 141305 32 100.0 35 ................................ CCTAACGCTGGATACTGGCGGAGGCTGTACCTTGC 141238 32 100.0 34 ................................ CCCACACGTCCCCCCGCTATGACGATGTGACAAA 141172 32 100.0 33 ................................ TCTTACGGGGAGGTAACTATTCCATATTCGCGC 141107 32 100.0 35 ................................ AGCCGCATCTGTGGGCCGCTGAGCATCCTGTCCTC 141040 32 100.0 34 ................................ TGCAGATGTGATGTCGTGCGAAGTGCCCGACACC 140974 32 100.0 35 ................................ GTCGCGGCGGACCAGGAAGTCAGCCGGGTGCAGTA 140907 32 100.0 34 ................................ CAGCACTATCGATGAGCTCGCAGAAATGTCGGGC 140841 32 100.0 35 ................................ AAACCCAGGCTGCAGGATTTCCCGCATACATCCCC 140774 32 100.0 33 ................................ AAGGCTGTGGCCGTGTATGAGTACCAGGCACGC 140709 32 100.0 34 ................................ AGCGTGGACTTATTGCAGGCGCTGCTATGGCAGC 140643 32 100.0 34 ................................ TTCCGCTTCGTCAGGCCGCTCAGTCACCATGCGA 140577 32 100.0 34 ................................ CCTCAGAACTGGTCACAGGCAAGAACCTGGACAG 140511 32 100.0 35 ................................ GACAAGAGCGCAAGAATGCTGCTTGGGAGCGCTTC 140444 32 100.0 34 ................................ ATAGTTCACTTTGGAACAAGCATGGAAAACACAT 140378 32 100.0 33 ................................ TACGCAGCCTTTATTGGCATCCTGGGGGCTGTA 140313 32 100.0 35 ................................ TGCTGCGCCCGGGGCGGGTATGTCGTATGCGGCTC 140246 32 100.0 36 ................................ GATCATGAACGCCGCCCAGGCGCGCAGGCGCCAATG 140178 32 100.0 34 ................................ CAACTTTTTCGACCGCTCTGTCGATAGTTGTATT 140112 32 100.0 33 ................................ GTCATATGCGGGAGCAGTCCATGGGCGATCCGA 140047 32 100.0 35 ................................ TCGCCCGTGCGGCTGTAGTGCCACTTGCGCAGACC 139980 32 100.0 37 ................................ TTTGCTGGGTCCAATGCGCCGCAAACTGAGCTACCGG 139911 32 100.0 35 ................................ CATCAGAGGACCACCAGAGACAGGACGAAGGCCAT 139844 32 100.0 33 ................................ AGCCAGCGTGGCCAGGCCGCTCCTGCCCTGCGG 139779 32 100.0 33 ................................ GAGTTCAGAAGCACCGTCGAATAGATCAGCCTG 139714 32 100.0 34 ................................ ATCAAGCGCATCGGCGGTAAAGCTTGATGATGGC 139648 32 100.0 33 ................................ GACACCCTCCTGCAGTTCATTGAGAACTGCGGC 139583 32 100.0 33 ................................ GCCGGGTTGCGTGCAGATGAAGTAGCCAGACAT 139518 32 100.0 34 ................................ GCACGTCCTGGCTATCACGCCGACAGCGCCGAGG 139452 32 100.0 36 ................................ GAGGCCGACTACCGCGGCGTGCTGCTGCGCGTGGAC 139384 32 100.0 33 ................................ ACCAAGATGCAGGTCCGCTACGGGGCAACGTGG 139319 32 100.0 35 ................................ ATCGTGCCGATGGTCCGGGTTGCCCGGGCCAATGT 139252 32 100.0 34 ................................ GCCGATCTGGTCAAAGCAGCTACACCGCTTCGGC 139186 32 100.0 34 ................................ TACGGTGCCCCAGGGCGATTATTGCGCTCGTAAT 139120 32 100.0 34 ................................ CCTGCAGTGGTGCATGCTAATTTCTCACGCCCTG 139054 32 100.0 34 ................................ ACGCCTGGACAGACGCGCGTTCTGCCCGCGCCCC 138988 32 100.0 33 ................................ CACGATGACGCGGAAAAGCTGCAGCCCCTGGTC 138923 32 100.0 33 ................................ GGCACAGACGTGGCGCCGCTGGCATCGCTCAAC 138858 32 100.0 33 ................................ GATGACACGAAGTTGATCGAAGAGCTGGAGAAG 138793 32 100.0 33 ................................ TCCTGCTGTAGCGCCGCGCGGCGAGTGCGTGTG 138728 32 100.0 34 ................................ ATCATCCTGGCCGCCTGCGTGAGTAAGCAATGGG 138662 32 100.0 35 ................................ CTCACGGATTGCGCAAGCCGCGCCGGAGCAGAAAC 138595 32 100.0 34 ................................ TTCGATGCCATGTCTATTACAAGCGGCGGCATTG 138529 32 100.0 34 ................................ CAGACGCTGCCCCCGTGGTAGCTCACGGGCTTGG 138463 32 100.0 33 ................................ ATATGCGGTTTACCAAGGAAATCTATGTCTACC 138398 32 100.0 33 ................................ GGGGCCCGCTGGACTGGAGCGCTGCGCTTCGCG 138333 32 100.0 33 ................................ ACTCGGGGGCGCGGGCGTTACCTGAACAACAAT 138268 32 100.0 35 ................................ ATCGCGGGGTCGTCGCTCGCATACCAGGAGAGAAG 138201 32 100.0 34 ................................ TTCACGCGCAGCAGCACTGCGCCCCAGCCACCGG 138135 32 100.0 34 ................................ CCCCACCGGTACCCCCGCCCGTGCCGCCCCCGTT 138069 32 100.0 33 ................................ TGGAGCCAGCGCACGCAGCGCGTGGCCTCTGCT 138004 32 100.0 34 ................................ GTACGAGTGGGCAATGGCATCGACAGATCTTCGC 137938 32 100.0 34 ................................ GTACGAGTGGGCAATGGCATCGACAGATCTTCGC 137872 32 100.0 33 ................................ GGCTGCCGAGCAGTTGCCCCTGTTTCGCTGCTC 137807 32 96.9 34 .....A.......................... ATCTCGAACGAGGCGATTGCCACGCGCTCGCCCT 137741 32 100.0 35 ................................ CTCGATGCTGAGCTGCACATCTCCCTGGTCGGCCA 137674 32 100.0 33 ................................ ACGCAGGGGCCAACGCTGGACGCGGCCATTGCA 137609 32 100.0 34 ................................ TATTTGTTCTTTGGTCACTTCGCCCAGGCGCATC 137543 32 100.0 33 ................................ TTTTTTGGGTGGTTGGGTATTCCCCAATCCAGC 137478 32 100.0 35 ................................ CAGCAACTCAAGTCCCAGCTCACAGCCAATCTGAG 137411 32 100.0 33 ................................ TGTCGCCACGTACTACCTTGGCACACATTGCGC 137346 32 100.0 34 ................................ TGCAGCACGTCCTTGACCTGCGACTCAACGAAGG 137280 32 100.0 35 ................................ AAGCAACTGGAGGCGCCCCAGGCCAGCGAGAAGGT 137213 32 100.0 36 ................................ GCTCCGCTGTTCGACTTCGACGGCATGGGCATCTAC 137145 32 100.0 35 ................................ TTCGGCGTGGCCGTGCGCAAGGCCAACGAGCGCGT 137078 32 100.0 33 ................................ AAGCGGCGCTCCAGACGCTCCACGTCTTTTTTC 137013 32 100.0 35 ................................ CTGTCCGTGCCAACCTTTCTCATCGGCAGGCCAAG 136946 32 100.0 35 ................................ TCTCCAGTCCAGAAATGCCAAACGCCAGCGCAAAG 136879 32 100.0 33 ................................ CATTTCGCCCTCGATGCCCGCCAGCAGCACAAC 136814 32 93.8 35 ...........C.....A.............. TCCCAGCGCATGGCCAAGCTCTCCGAGGTGCGCAG 136747 32 100.0 34 ................................ GAGCGTTGCGCAGCGGGCCTCCAGCTCCATCAGG 136681 32 96.9 33 .................T.............. GACGCACTGCTCAACTACGCGGGCTCCGTGCAC 136616 32 93.8 100 ..........A.T................... GACCCTGGCACCGGTGCCTACCTCAACGACATCACCTTGTGCCCCATGCGGGCGTGGATTGAGACATCTCGCACCATCTGCACGAGGTCTATGAGATCTG 136484 32 75.0 0 T.G.......A.A.....A.......G.T.T. | ========== ====== ====== ====== ================================ ==================================================================================================== ================== 76 32 99.4 35 GTCGCGCCCCGTGCGGGCGCGTGGATTGAAAC # Left flank : CAGGCGATGAAAAATGAGGTGCGCCGATGATGGTCCTGGTGAGCTATGACGTCCGTACCCAGGACCTGGATGGTGCCCGCCGCCTGCGGCGCATCGCCAAGGCCTGCCGGGACTTCGGCCAGCGTGCGCAATACTCCGTCTTCGAAATAGAAGTGGACGCCGCGCAATGGGTCGCCCTCAAGGCGCGGCTGATGCAAATCATCGACCCCGCCCAGGACAGCCTCAGGTTCTACTACCTGGGCCAACACTGGCGCAGCAAGGTCGAACACATCGGCGCAAAGCCCGTGCTGGACCTCGACGCCCCCCTCGTCTTCTGAGCCTCCGCGCGAACCCCAAGTGACCGCCGCCTGCCCTTGAGGTTCGCGGCCGCGCAAGCTGTTGTTTTCAAAAGGGGGTGGGCGAGCGAATGGCTGAACGCCGATCCTGCGGCATGACAGTGCCGCCTGGTTCGCGGAAGCCTGGCTTTTTTCATAGCGGTGAAATTGCTCTATAAGTACCCC # Right flank : CCCCGTTTGCACTGCAGCCTCGTGTGGTGAAGCATGGGGAACTTGGGAGTTTGTGGCGGTCATGCCCCATCCTCGAACGTCGCTCAACCCCCCTTCCAGGGGAAAACCCCCGGGCGCCCGCGCCGCAAATGCATAGGTCTGCGCATGAATCGTTCAGGCCCGGTGCCATCCCTGCGGAGAATTCATGAAAGGAGCCTGCAGGGCATCGCAACCACGGGGCTGCATGCACCCGCAATAACAAGAAGCACAAGAACAAGAAGCACAAGAAAAAGGGCTGGCGACCGGTTTCAAGCTGCTCCCATGGCAGCCGTGCTGCGGCCATGGGGATTTTCGCCAATCGGCAATGTCAAGGAGGAGAGGGATATGAATAAACGCATGATCCGCAGCGCTGGCCTGGCCGCGCTGGCGCTGGGCACGGCCCTGGCGGCCCAGGCCCAGAGTTCGGTCACGCTCTATGGGCGTGTGGTCGCGGGGGTGGACTACCAGAGCAATGTGTACGA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGTGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCGTGCGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 9431-9756 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCZP01000038.1 Delftia acidovorans NBRC 14950, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 9431 28 85.7 31 TGG............A............ AAAGCGCATTCGCCGAGTGCGCTTCGTTTTT 9490 28 100.0 32 ............................ TGTGCTCTACGACACGGCCGTGCATGCTGTCG 9550 28 92.9 32 ...TG....................... CTCCTCCTTCGAGTGCTTAGCCCTGCACCCAA 9610 28 92.9 32 A..........T................ TGTGATCTGTCGGCAGAAGCAAAAGGCAGGTG 9670 28 92.9 32 ...........T.............C.. CTCTCCGCCAAGATGCAGGCCGCTTGAGCCCT 9730 27 78.6 0 C............C.......-...GCC | ========== ====== ====== ====== ============================ ================================ ================== 6 28 90.5 32 GTTCACTGCCGCATAGGCAGCTCAGAAA # Left flank : GCTGCACTGGTCTATTTCCTGCTTTTCATGGACCAGAGGTACATCAAGGCAGCGACCCAAAATTCCATTGAGGTGAGCATTCGTTCAGCCGACTATAAGCTGAAGCACGATGCTGGAATCTACCCTTCAGACGAGGAAGTAGAGCACCTCAACACATTCAATGCTTTTCAGCTGAAAAAGATGCGCAAGGAGTTTTGGTCCGCAGCGGCATGGACTCTGCTGATCATCGCCTTTTCCATCGGAGTGCTCGCCCTATTGTCGAAGGCCCCATGTGCCGGACTCACGGCGCCCAAAGTAGTTTCCTCAATCGGAGGAGCGTTGGCGGCATGGGGGACTATGTTCCAGTTGATCCGTGCGGATGCCACATTCAAAGCTGCGCAGGCACACGAATTGATGCGCCCGCCCCTCTTCCTGCTCCTGTTCGTGCCAGGCTCTGTGCTGGCTATCGCCGGCACGCTGGCGTAGGCCGGTGCCCGTCCGGGCGTGGAGTGGTACGCTCT # Right flank : CCGCCCAGCGGGCCTTTTTCTTGGGCGCAGCTCACACGGGCCGCGTCCGCACCTCAGCGCTCCAGGGCGTCTTGCCACCGTGCTGCTCGGCCTGCTGACGCTGCAGGTGCGCGGACAACCTGGAGACTCAGCGCTTGGCCTCGTCCTCCAGCGTGTATGCGTAGAACATGAGGTGCTCCAGCGCTACAGCGTGCGGGTCACGACCTTCCAAGGGCGATTCCCTGGCAGAGTCGTCCGGCAAGAAGACCAGAAGCACGTCGCCACAGGCTTCGTAGTCTGCGCTGAACTCAACGCCGTTGTGGGTGAAGACGCATTCGTGCATGCGGGGCATTGTCACAGGTGCGAGCTCGTGGCACCAGCGCCCAGAAACGACGAAGCCCGCACGGGGCGGGCTTGGTTGGAGTGCGGATTGCTACTTGGCAGGCTGTGTCGCAACAGTAGCAGGAGCCGCCGGCGGAGGCGGGTTCTTGGCCAGGTCGTACTGCATGAGGCCAATGATG # Questionable array : NO Score: 3.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.53, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //