Array 1 42997-41259 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYAJ01000221.1 Escherichia coli strain ECOR27 ECOR27_contig_36_consensus, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 42996 29 96.6 33 ............................T GGCCTGGATTTTTTCGAACACCACCCGCTCGTT 42934 29 100.0 32 ............................. CAAATATATTTTGCGTTAATTATTCGAGGTAA 42873 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 42812 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 42751 29 100.0 32 ............................. CCTACGCCATGTGGATTAGTCCGGCGTTTCAT 42690 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 42629 29 100.0 32 ............................. GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 42568 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 42507 29 100.0 32 ............................. TTCTCCAATCAGCAGTGCCCATCTGATATGCA 42446 29 100.0 32 ............................. TCAGGGGAATTGCGATATTCAGGCAGCGTAAC 42385 29 100.0 32 ............................. ATCGCTGGTCTGCGAAAACGCGCGCCCGAAGA 42324 29 100.0 32 ............................. ACGAGGTACAGTGGTGCAAAAACAAATTATAG 42263 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 42202 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 42141 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 42080 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 42019 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 41958 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 41897 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 41836 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 41775 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 41714 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 41653 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 41592 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 41531 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 41470 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 41409 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 41348 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 41287 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 335-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYAJ01000277.1 Escherichia coli strain ECOR27 ECOR27_contig_87_consensus, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 334 29 100.0 32 ............................. GTTTGCAAACGCGGTTTGAATCCCGCCGTAAT 273 29 100.0 32 ............................. CGGATCGTGTGTGTGCCAGCGCTGCGCCCAGG 212 29 100.0 33 ............................. GGATTTGCGCGTGGTGAACACGGCAACACCTGC 150 29 100.0 32 ............................. ACCATAACCTGCCCACCCGTTATTTTGTCATC 89 29 100.0 32 ............................. CAGGTACAGCCGTTTCGGTGTTTTGTTTTTGT 28 28 96.6 0 ............................- | ========== ====== ====== ====== ============================= ================================= ================== 6 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : C # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //