Array 1 44614-48671 **** Predicted by CRISPRDetect 2.4 *** >NZ_LVDI01000006.1 Shewanella algae strain JFL scaffold00006, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 44614 29 100.0 32 ............................. ACATGCCACTGCTCAGGCAATCGCTCGAGTCG 44675 29 100.0 32 ............................. GTGCTTTCATCAAGCAACTATCTATCGGTAAA 44736 29 100.0 32 ............................. ACAGATCGCGATAGCGAGCAATCCAACCGCCA 44797 29 100.0 32 ............................. CTTGTCTAGCAGGAACGAATAAGGGGGCAAAA 44858 29 100.0 32 ............................. GTCTTACAGCACCCCGAGTTACGCCTGACCAC 44919 29 100.0 32 ............................. CCGCACCTTTAACGAGATGGAAGGCCTGACAG 44980 29 96.6 32 ............................C CCATTCACGCCTTGGCCACCAATCCACATGTC 45041 29 100.0 32 ............................. GAAGTGAAAGGCGAGCACCAGCGCGCCGAGAA 45102 29 100.0 32 ............................. CTGTGCTTATTACTCCCCACCTCTGGGATGCA 45163 29 100.0 32 ............................. CAAACCCTATACAAACCAATTCCGGCAATTTT 45224 29 100.0 32 ............................. GTGAGTCAATGCGTCAAAATCTGACACATCTA 45285 29 100.0 32 ............................. CATGGCATTGCGTTGCAGTTTGGCATTGCTGA 45346 29 100.0 32 ............................. TTCGGTAGCAAATCCGTCCGCTAATAGGGGGC 45407 29 100.0 32 ............................. GCGGTGCCCTGTAGCTTGTCAGAATGCCACAG 45468 29 100.0 32 ............................. CAGTGAACGCACCCTTTCAGCAGCGGCGCAAA 45529 29 100.0 32 ............................. TAGTTGAACGCAGAGCACAAGGTGAAGACTAC 45590 29 100.0 32 ............................. TCGTCAAGCTCTGACTGCTCCCAGCTGTTCAG 45651 29 100.0 32 ............................. GTTTGAGATAATAGCTCTTGGTGTATCGACAA 45712 29 100.0 32 ............................. CGTTGAACCTTGCCATAGATGCCAAACTCAGT 45773 29 100.0 32 ............................. TTGTTGTTGGGCAGAAGGTCTATTACGCCGGA 45834 29 100.0 32 ............................. CTCTGGTTCGTGATCTCTTTTACGGCAATCAC 45895 29 100.0 32 ............................. CAGAGCTGATGCTTTCTAGCGACATCCACGAA 45956 29 100.0 32 ............................. CCGTTGGTCAGGCTGCAGTTGGTCTTGCAAAT 46017 29 100.0 32 ............................. TTGTTTTAATGCTCGGCGGGACATAAGCACCG 46078 29 100.0 32 ............................. CCCTGCCCCTGACTTAGTGCAATTCTCTGGTA 46139 29 100.0 32 ............................. ATTCTAATAAAAACGACCAAAACGGACTTTTA 46200 29 100.0 32 ............................. CGGATGCGCCTTTTGTCGGATCGGGTGTGCAT 46261 29 100.0 32 ............................. CCGCCTGATAGCTGCTTGAATGCCTGGCTGTT 46322 29 100.0 32 ............................. CTGAGCCCTATCCTTACGCGAACCGGAAAATA 46383 29 100.0 34 ............................. CACGAGACCAATGGCGCTTATCAGGTCGTTCATC 46446 29 100.0 32 ............................. AATCTCGACTATATCGACAAGATGCCAGTCAA 46507 29 100.0 32 ............................. ACGACCCAACTGGCGACAATGTAACTGCAATA 46568 29 100.0 32 ............................. CATTGGAACAAGAGGCAGTCACCCTGGATTAG 46629 29 100.0 32 ............................. TTTGTTTGTGTGCGGCAAACCGAATCGGCAAA 46690 29 100.0 32 ............................. GGTATTCCGATGCTGGGACATGGCCGAATCTA 46751 29 100.0 32 ............................. GTTGTTATGCCGAGGTCAGAGCCATGATTTTA 46812 29 100.0 32 ............................. TCAGACCGTCTCGTCCACCTGTTGATGTACCA 46873 29 100.0 32 ............................. CCCTTTTTATTTCCCGAATTCAGCAACAGAAA 46934 29 100.0 32 ............................. TACGGTGCCAATAGATTCTATAGGTTGGCAAA 46995 29 100.0 32 ............................. CCAGCGCATATCAGCAAAGCGCAGGCTTGGAA 47056 29 100.0 32 ............................. CCAGCGCATATCAGCAAAGCGCAGGCTTGGAA 47117 29 100.0 32 ............................. CGCCTGGACGTAAACAGCATAGCTGATGACAA 47178 29 100.0 32 ............................. GAATGTAGAGTCACAATCTTCAACAGGAAGCG 47239 29 100.0 32 ............................. CCAATCAGCAAGGCAGAAGGCCTGTTAATCGC 47300 29 100.0 33 ............................. CATCTCTTGATTGAGCTGCCAGAGAATCGGGAA 47362 29 100.0 32 ............................. ACCGTCACGGCAGATGTTCAGATGAAAAACCC 47423 29 100.0 32 ............................. GCATGAAGATTGCATTTGTGCTGCTTGCTGTA 47484 29 100.0 32 ............................. GATCTTAATGCGACTCAGGCGGCAATAAGGGC 47545 29 100.0 32 ............................. CACACCAACCACATAAACCATCCTGAATGGCG 47606 29 100.0 32 ............................. CAATTCGACTGGGATACGCCGGATTCAATCTA 47667 29 100.0 32 ............................. GTTGTTAGCCATTCTTTATATCTCCGATGGGT 47728 29 100.0 32 ............................. GCTTCTCAGCAGAGGTATCCCCTGCCACGAAT 47789 29 100.0 32 ............................. CCTAAATGTCGGCTGCATGTTACCTACCACGG 47850 29 100.0 32 ............................. GGGATGACATGGACGTTTATATTGGTTTTACC 47911 29 100.0 32 ............................. CAGATTTTAAACTCTGATTATTCTCAAGAAGA 47972 29 100.0 32 ............................. GTTTAAATCAATATTAGTGGCAACGCGACGAC 48033 29 96.6 32 ............................C TCTTGCGTCTGTTTATCGGATGAAACATGCGC 48094 29 100.0 32 ............................. GGTTTATACCGGCTGCTGAGCCTCCGGCTGTT 48155 29 96.6 32 .A........................... CCAGAGCCAAAGAGCTGGCCGCGCAAATCAAA 48216 29 96.6 32 .A........................... CATTTGCTTTTGCGCGTCTGATGCTTCCCCAA 48277 29 96.6 32 .A........................... AAATATCTGCCAGTTCTGGCAATCGCTGTCGG 48338 29 96.6 32 .A........................... CCATGGTCGATGAGTTTGGCGACCAAGTGCAG 48399 29 96.6 32 .A........................... CAATGTGATGAATATTTTGGGCTGAACTTAGT 48460 29 96.6 32 .A........................... CGCATATCCAACGCATCGGCAATCGCCATTAA 48521 29 96.6 32 .A........................... GAACGCAGGCAAAGAGCCCTTCATGCTGTCCA 48582 29 100.0 32 ............................. CGGTGTCGTCAGAATCCATAAAGGCAGCATAG 48643 29 89.7 0 .A........................GT. | ========== ====== ====== ====== ============================= ================================== ================== 67 29 99.4 32 GTGTTCCCCGCACCCACGGGGATAAACCG # Left flank : GGTACTGGCAGCCGGTGAAATTGAGCCGCCTCCAACTCCAAAGGATGCCCAGCCCATTGCTATACCAGAGCCGAAACCGTTGGGAGAACAAGGACACAGGAGCCAGTAACTATGAGTCTGTTGGTTGTGGTGACCGAAAATGTACCGCCTCGCCTACGTGGTCGTTTGGCCATCTGGTTACTGGAGGTGCGGGCCGGGGTTTATGTGGGTGACACCTCCCGCAAGGTGAGGGAAATGATTTGGTATCAAATCAGTGAATTGGCAGAGGAAGGCAATGTGGTGATGGCCTGGGCCACCAATACAGAGTCAGGATTTGAATTTCAAACCTTGGGTGAGAATCGTCGTATGCCGGTGGATTTGGATGGTCTGCGACTGGTCTCATTTTATCCAACTGAAAAATAACAAAATATTGCTCTTTAACAACTTGGAATAATAGCCTAAAAAGTTGGTGAATATTTTTAAGTGAAAAATCGCTTAAAAAACAATAGTATTTACCAAGA # Right flank : GTATTTCTTTACTGTACAACTCCAGCAAAATCCGAACGTCCTGCATTTGTGGGGCTGAAGAGGCCGAAACTGAGGAGATCTAAATAGCGGCCCGGCTCAAGGCAGCATATCCACTCGAAGTAGTCTGCTGGCGCTGCGGCCTTTGTCGTCGCTGACTGATAACTGGAAGCGTCCTGCTCTGGGTGGGCGCCATTCCAGGGTTTGGCCTGGCAGGCTCTGGCCGAGCAGGCTGTTCCCGGCAAACCAGTATAGTATTTGGCTGTCGGAGGCGGCGTCGGCCTTGAGGGCTATGTGTTCATTGGCCACGCTTTGGCGCAGGCTGTAGGTGACGCCCTTCAAGGGGGAGCGGATAAGCGGGGCAGTGTAGCTAACCGCGACTCTTTGGCTGCAGGCGGCCGGAAGCTCCGGCGGCCTCCTGCGGGGTAAACCTGCCTGCTCGAACAGGGCCGCCAAGTCTGATGGCCAGAAGGCAAACACCTCCTGGTGGTGAATTTCCGAGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACCCACGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTACCTACGGGGATAAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.10,-10.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //