Array 1 108122-106279 **** Predicted by CRISPRDetect 2.4 *** >NZ_LVFM01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain CFSAN033920 CFSAN033920_contig0000, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 108121 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 108060 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 107999 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 107938 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 107877 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 107816 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 107755 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 107693 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 107632 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 107571 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 107510 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 107449 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 107388 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 107327 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 107266 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 107205 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 107144 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 107083 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 107022 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 106960 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 106857 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 106796 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 106735 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 106674 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 106613 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 106552 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 106491 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 106430 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 106369 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 106308 29 96.6 0 A............................ | A [106281] ========== ====== ====== ====== ============================= ========================================================================== ================== 30 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 125196-124253 **** Predicted by CRISPRDetect 2.4 *** >NZ_LVFM01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain CFSAN033920 CFSAN033920_contig0000, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 125195 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 125134 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 125073 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 125012 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 124951 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 124890 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 124829 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 124768 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 124707 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 124646 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 124585 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 124524 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 124463 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 124402 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 124341 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 124280 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //