Array 1 636200-635498 **** Predicted by CRISPRDetect 2.4 *** >NZ_QATF01000033.1 Salmonella enterica subsp. enterica serovar Saintpaul strain sg_t8 t8_33, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 636199 29 100.0 33 ............................. TTGAGCACGACGAAATTTGGGTTTGATGCAGCC 636137 29 100.0 32 ............................. GTTATTCAGTTTATTAAATTTTTCCGCCAAGT 636076 29 100.0 32 ............................. CAACTGTATTTTGCGTTATTACGCTGAACCAG 636015 29 100.0 32 ............................. CCGAGGTCGGAGCGGATTGACTTAAACGGCAA 635954 29 100.0 32 ............................. TGCAACAGCAACAGGAGAGAATGCGGCAGCGT 635893 29 100.0 32 ............................. CGTCAGTTGCTGGAACTGGGGCACGATCTGGT 635832 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 635771 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCCTCCTGC 635710 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 635649 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 635588 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 635527 29 96.6 0 ............T................ | A [635500] ========== ====== ====== ====== ============================= ================================= ================== 12 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 653829-652459 **** Predicted by CRISPRDetect 2.4 *** >NZ_QATF01000033.1 Salmonella enterica subsp. enterica serovar Saintpaul strain sg_t8 t8_33, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 653828 29 100.0 32 ............................. CAACAGCGTCCCGTATTCTGTATCGTTGACGG 653767 29 100.0 32 ............................. CGCATTACTACCGGGATTAGTACCTATCAAAA 653706 29 100.0 32 ............................. GCAGACGCTGCCGTCCCCCCGCTCGACGCTGA 653645 29 100.0 32 ............................. CAGCGGGAAAACGTCCAAGTGCCCATATCCCC 653584 29 100.0 32 ............................. CCTTCAGAACATGCGCGGTATTATTTTTGACC 653523 29 100.0 32 ............................. CCGTGGAAAGAACCAGAACGCTGGATATTGGT 653462 29 100.0 32 ............................. ACCACATCAATGACCACATCACGCAGATATTA 653401 29 100.0 32 ............................. CGCCGTGTTTACTTCAATAGCGACGTTGTGAG 653340 29 100.0 32 ............................. AGGTTGACCATCGTCAGCTTCATAAAGATTTA 653279 29 100.0 32 ............................. GGCGTTATTGAGTGGGAAAAAATCGTAAGCGC 653218 29 100.0 32 ............................. ACGCTCTATAGCCATTAGGTGCGCCACCACTT 653157 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 653096 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 653035 29 100.0 32 ............................. CGATAATTTATAAATTTTCGTCCACTCATCAA 652974 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 652913 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 652852 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCGGACCAATCGACTA 652791 29 96.6 32 ...................A......... CGCCGCCAGCTGGAAAAATGCCGCCTGTTAAT 652730 29 100.0 32 ............................. CTCCAGCCGACGCATTCGCTTGATCGCTTTAT 652669 29 100.0 32 ............................. GGGCTGGACCTCGATTTATTTAATACGTTTAT 652608 29 100.0 32 ............................. TCCCAACTCGTCAGGGCGGTTATCCAGCGCCA 652547 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 652486 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATTAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //