Array 1 717248-718997 **** Predicted by CRISPRDetect 2.4 *** >NC_000854.2 Aeropyrum pernix K1, complete sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ==================================================== ================== 717248 24 100.0 39 ........................ AGCATCCGAGGGGCCCCACAATGAGGCTGGGGAGGGGTA 717311 24 100.0 41 ........................ TGGGCCCAGGTCCTGCTGTGACAATAGGTTTCCGTTGCTGT 717376 24 100.0 42 ........................ ATCTATAACATCATCGCGTGCAGCAGGGGGCCAGAGGACTTC 717442 24 100.0 45 ........................ GGTCCTGGTCTTGCTCCCCCGCGACTACTGGCAGCTCTTCCAGGG 717511 24 100.0 41 ........................ TGAGCCTAGCCAGCTCGGCCCTGTTACGGGCCTCAACCTCA 717576 24 100.0 38 ........................ TCGCCATGTAGTCGTACATCGCCCTCTTCAGCACGTCA 717638 24 100.0 37 ........................ CCGCCGAAGAGGGCCCAGCCTATGATTATTCCGAGGC 717699 24 100.0 41 ........................ TCTTCATCTACAACTTTTACAAAAAAGCATGGGCTCACGGG 717764 24 100.0 41 ........................ TGTGCTAAGAGCCCCGAGAAATGTGTAGCCTCGGAGGGCCC 717829 24 100.0 52 ........................ ACGTCGAGGTTAGGGTTATGGTGAACGCCCAGGGGCAATTAGAGTATACCGA 717905 24 100.0 43 ........................ AAGGCAATACTCAGGATAGACAGGTACGCCAGGCAGGAGGTAG 717972 24 100.0 41 ........................ CGACTGTGGCTATAGCCAGGGCACCGACGACACCGTACTTC 718037 24 100.0 38 ........................ CCTCTCCCCCTACACGACAACGAGGAAGACGGGGCCCT 718099 24 100.0 41 ........................ GCTAAGCAGTGCATACGACACTTCCTTACCCTGCCGATCGA 718164 24 95.8 44 ......C................. ATCGCATAAGGGCTACAGGAATCCACGTAGAGTTGCTAGGGAAA 718232 24 95.8 39 ......C................. GCTGTAGAGGGCGGCGTAGTGGAAAGCCCGCCTCCGCCA 718295 24 95.8 49 ......C................. ACAAACTGGTTTTCATGTATCTGTGTCTCTGTAGCCGTATCAATAGCAT 718368 24 95.8 42 ......C................. CTTTCCCGTCCACTCCAACGAAATCCACGATAGATAGTATTG 718434 24 95.8 43 ......C................. GCGGCGCGGCAGTAGGAGGTCTAGCATGACCCCTATGAGGACG 718501 24 95.8 42 ......C................. CAGAATTTCTGGGGTTTCAGCTTATAACGGCTGGGCGGCAGA 718567 24 95.8 42 ......C................. AGCTCGTAGAGGTCAGACTTGTCCACCCTTAGATCGGCCGCC 718633 24 95.8 44 ......C................. AAGGCAAAGCCGATTGTCAAGCCCAAGCCCCCGGCAATAAAGAA 718701 24 100.0 47 ........................ TGGGTTAGGTGATGCTGTAAGGATGGTAAGTTGGTTCCTCTTGACTA 718772 24 100.0 46 ........................ GGCAAGAAATAACACCACAGCACCCAGACTTAATATAAAAACTGCA 718842 24 100.0 41 ........................ AGCATATTCGCAACTTCCTCAAGCGCTTCCTTCGCCTCTTT 718907 24 100.0 43 ........................ TAGGGTCCTCGTGCTACTGGAACCCACTCCTAGGGAGCTCCGG 718974 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ==================================================== ================== 27 24 98.8 42 GAATCTTCGAGATAGAATTGCAAG # Left flank : AAGCCTGAGGAACACCATAGACGACCTCCTAAGAAGCTACAGGGCAGCCACCGAAACCCTAGAAGCCACCCGAAAATAGCGAGCCACCGAAAACCCAGACAGCCTAGTTAAAACATAAACAACACCCAAAACTTTTCCCCTCTTCCGTGGGGATGTATATACGTTTAGATTGGGGTAGTGTTTATTAGGCTTGGTTGGGACCCCCTCTCCTGCTGTATATATTTTTGTGTGTGGTTGTTTTTGTATCTCAATGTTTTCCCCTCAATCTGGGGGAGTATATACTCTTACCTCGTGGGCAAAGCATATTAGGCCCTGTGTGAACCCCCCTTATGGCGAGGCCCCCGGGAGGGGGCCGGGGGCCGGTGTGGTAAGCCCCGGGGGCCGGGGGTTTATCTATGTGATAGAGTTGGCTACGATCCCGCCCCCGGGATGGCGGGGTGTGGTATAGAATATAGTATCGGGTGTAGACACTACAACACACCCCAACAAAACCATGTGCA # Right flank : GTGGTTTGTAGGGCTCTTGCGGCTGTGTGGCATATTTTTATAGCCTCGGCTTGGGCATGTTGTGAGGTGGGGATGGCTAGGCTTGGTTAGGGGTGGCATTAGGGATACGTGGAGGCTGAAGAAGTGGTTTAAGGTTGTGGCGCCGCCGCTGTTCGGGGAGACTGTGCTGGGGACTACGCCGGCGGATGATCCGGACAAGCTTATTGGGAGGGTTATGGAGACTACTCTGTTCGACATCACCGGCGACTATAGCTATGTCCACGTTAAGATGTACTTCCAGGTTGTTAGGGTGGAGGGGGACACGGCCTACACCCGGTTCAAGGGGCACGAGCTGCTGAGGGACTATATCAGGGGGTTGACGAGGAGGAAGAGCAGCAAGGTCACCGGCATATTCAACGTGTGGACCAAGGACGGCTACGGCCTTAGGGTGACGGCGATGGCGTTCACACGGCAGCGCTGCAAGACGAGCCAGAAGAGCGCTATAAGGAAGGTGATGCAGG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAATCTTCGAGATAGAATTGCAAG # Alternate repeat : GAATCTCCGAGATAGAATTGCAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.50%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 2 786657-789355 **** Predicted by CRISPRDetect 2.4 *** >NC_000854.2 Aeropyrum pernix K1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= =============================================== ================== 786657 25 100.0 39 ......................... GTAGACGCCTGCACGGTTCAGCAAATACACGGCATCCTG 786721 25 100.0 38 ......................... AACTGGAAGAGGGGGAGTAAGAGAGCGTTCTGGGGCTA 786784 25 100.0 37 ......................... GTAGACCTGGCCGTCGAGGTGTATCTCCATGCAGCCC 786846 25 100.0 40 ......................... TTAGAAGCCTATTAGAGCAGGGCGTGGACGATGGCTCGAT 786911 25 100.0 38 ......................... ATAACCTCGGTGCCAACGCGTTCGCCGTGAATGCTGGC 786974 25 100.0 41 ......................... GAGAACCTGTAGCGCTCGAGCCTCGCAGCCGCCCTAACGGC 787040 25 100.0 40 ......................... AAGAGAATTTGCGCCGATGAGGCGGGCGAGGGGTGACGGT 787105 25 100.0 39 ......................... CTTCAGGTCTGCAATCGCCGCCCTGAGGTTCTGAATATC 787169 25 100.0 41 ......................... ACCCGCCGGCGGCCTCCTCGGCGGCATAGGCTGCACAACCG 787235 25 100.0 38 ......................... GGGAGACTGCTAATCCGGAGGAGGCCCCGTGTGCAAAA 787298 25 100.0 37 ......................... TCCTAACCGGCGGCCTCCGTATTATCCGGGGCGGCGG 787360 25 100.0 39 ......................... CTGGTTATAGTGAGGCCCTCCGGAGTCTCTATCACAACC 787424 25 100.0 37 ......................... CTTTACGCTGCCTTTCTGGCGGGGGTCCTGAGCCAGG 787486 25 100.0 42 ......................... TTACGGCATAGGGCTAGACCCTGCTATGAGCGGGGCACCGAC 787553 25 100.0 38 ......................... CTTACCACCACCATTGGAGCCACCCCAGAGCTGCCTGG 787616 25 100.0 38 ......................... GATTGCATAGGCGATATACCCGAATCCCAGGTCGGTAA 787679 25 100.0 47 ......................... AGGAGGCGGAAGTACGAGATAGTTGTTGGGCCCGGAGATGCCGGCTA 787751 25 100.0 39 ......................... TCCTGGACCTCCGCCTACCCCGCGTCCTAGTCTCCCGGG 787815 25 100.0 40 ......................... TGGACCCACAAGAAGCTGGTGAAGAGCATTATGGAGTCAA 787880 25 100.0 40 ......................... CCACCGCCTGAGCTCCCTCTCCAGCTCGGGGTCCACCTGG 787945 25 100.0 42 ......................... ACCACGACGGTCTCCTCGCCCACGCCGCAGTAGTAGTCCGTG 788012 25 100.0 44 ......................... TGAAGAAGCAGCCTAGGCCTATACTAGTCTATGAGCTCTCGAGG 788081 25 100.0 42 ......................... TTATGAGGTGTGGGAGCGTGGATGGTGAGGTTGTTATAAAGT 788148 25 100.0 39 ......................... AGTGGGCAAGCGGATAACATCTCTATAGAGAGGTCTACG 788212 25 100.0 46 ......................... CCACCTGGCGAGCCGCCCACCACCCTGCGGCATACGCAGCGCCTGG 788283 25 100.0 46 ......................... TCGAGCACTTCCAGGCGGCTGGCCTTGCTAGGCTTGAGAACGGCAG 788354 25 100.0 42 ......................... GCGGTGGTTGTGCTAGCCTTCGCATTCGCCCTCTCGGGCCCC 788421 25 100.0 39 ......................... CTCTTTCTCGAGCACCAGCCTGCCTTCGGAGTCCATAGC 788485 25 100.0 42 ......................... TTCACAGTCCACGCCTCGCAGGTCTACCATCTAGTCGATATT 788552 25 100.0 39 ......................... GCCGCGCTGAACGCCTACTTGCCGCCTGGCTTCGAGGCA 788616 25 100.0 40 ......................... ATCACAAAAACGTGAACGCGCCCGCCCGGCTACAGCTTCT 788681 25 100.0 40 ......................... CCTCACGTACAGCCACATGGTCCCCAGGCCAGCCAGGACG 788746 25 100.0 36 ......................... TTACGGGTGGTGTAACTAGAAATAACTATGAAGATA 788807 25 100.0 42 ......................... GAAGCAACTCAGAAGAGCTTCCCTCTTGACTCTAAAGCCCTT 788874 25 100.0 41 ......................... ATGTGCATGGAGTGGGCATCAGAATTAATGAGATAATCAAG 788940 25 100.0 40 ......................... CTCGGTTACGGCGTTAGCCCCGCCGTTTGCATTGACAAAC 789005 25 100.0 38 ......................... GTTGCCCTAGCACCCCTGCTGGCCCTGCTCCTAGTACT 789068 25 100.0 38 ......................... TACAACTTCCTGAGGTGGCTCGCCGCCTACGGCCCCGT 789131 25 100.0 41 ......................... TGCAGCCAGCTTTACAACGCTGATCCTCTTCTCACTCCTAA 789197 25 100.0 40 ......................... GTATATAATGTCGGGGGCTATCCCGCTGCTCATATCCACG 789262 25 100.0 44 ......................... CTGGAGCGCCGGGAGCTCAAGAGGGACGGCAGGCGCAGGGCGAG 789331 25 100.0 0 ......................... | ========== ====== ====== ====== ========================= =============================================== ================== 42 25 100.0 40 GCATATCCCTAAAGGGAATAGAAAG # Left flank : TCGCTGAGGGTAGGCCTGGCCGCGTACCTAGGACCTACGACATTCCACTTCCACCCCCTTAACTCGGCGTATACCCCATCACCAGCAGAGGATCTCACCAAGTCCCACAAGCCTCGGGGGAACAAACACAACACCTCAAAGTTATTATACAAGCAGTACATCTATTTATCCGAATGATGTATCTATTGACACATAAGATGTGAAAAATGACACATTAACCACTTATAAGCTAAAATATGAATGGCAAGACCTTGATAATAAACTCAAGACCAGCAATCTAAACAGATGGAAAAAGTACCTATGTAAAATAGTCCATCAAAAATAAAAGCACACATAATAACGCTTAATGCGAGCAAACTACATATAAATATAAATATCCGGTAGCCTCTCTGAAGAAGAACAAAGCCGAACCGAGGGTAAAATCTATTGGATGATCGGAAAAGGAAAAATTTATATAAGAACCTAACACTAAATAAACTAAACATTGAATCGATTAAACA # Right flank : GACGGTGGGGCTTCTATTCTGAGGAGACCAGGGCTAGGTCACCCACTCAAGCCCACCGCTGTGGCGGGGAAGAGTAAAACACACCAGGGGCTCCGGGGGCCCCTGGGGGCTGTGTTTACATGGTTTTCGTCGTTGTTCATGGTGGGCTGCCGTATACGGGGTCTAAGTCTCCATCGTCATCGTCTAGTTTTGTGTAGCATAGGCGTCTTTCCCCCTCGGCCGTGACGTTTAGGTGCTGGGCGTTGTGTTCTTCGAGGATTGGCATGAGCTGTAGCATGATCTGTGGCAGGCGGTAGGGGTTTGTTCTTATCGTGAACTCTATTTTAACCGTCATAGTCCAGTCTTGGCTTCCGTTTGGGCCTTCCCGGCCCTCGGGCATCTCACCCTGCTCCCCAGCCCCCACAGGCGCGGGGGCTGGCGTGTTTTATTGTACTGTGGTTGTACCTTATATGGCTTGCGCCTCCCCTCCCTCCCTCCTGCCTGAGATCCTCTTGGCGGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCATATCCCTAAAGGGAATAGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.70,-4.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 3 1278487-1277264 **** Predicted by CRISPRDetect 2.4 *** >NC_000854.2 Aeropyrum pernix K1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== =============================================== ================== 1278486 24 100.0 40 ........................ CGGAAACTATAACGACCCTACCAGTGAGGCCCAGCCTCTC 1278422 24 100.0 38 ........................ ACACCATCTTGCTGAACCTCTCGATCCTAGCCCTACAG 1278360 24 100.0 42 ........................ CTGCTCGGCCCCCTCTACTGGCCTCTCCAGCTGACCGTGCTG 1278294 24 100.0 42 ........................ GACGAAGGCGCCGAGCCGCTTCCACGCCCAGTTGGGCGAATC 1278228 24 100.0 38 ........................ CTATCCTCAGCTTCGAGAACCTTAACACAAGTGCCTGG 1278166 24 100.0 41 ........................ AGCGCAAGCATGACCGCGGGCCCAGCCCGCTCCCCATACGC 1278101 24 100.0 40 ........................ AGTCTGATGGTGTTTTGGGAATTTCCACGCTCACTAGAGG 1278037 24 100.0 38 ........................ TGAGCTTGTCAGGGTTATACTGATTAAATATATAAGAG 1277975 24 100.0 47 ........................ GGTGGATAAAGAGGCGAAGGAAGCGCTCGAAGAGGTAGCCAGAGAAT 1277904 24 100.0 45 ........................ CTACCCTGAAGAGTGGCTCGATCCTCAGCGCGCTAGTTCCGTCTA 1277835 24 100.0 39 ........................ TTATGACGCCTAGGAGGAACCAGAACCCCCAGACTATGA 1277772 24 100.0 41 ........................ CAGACCCCACCAAGGGGCCTAGCAGGCGGAAGTCGGCTGGC 1277707 24 100.0 37 ........................ CAGCTCCACCTTGCCCTCTCCGCCCAGCCATGGAGCC 1277646 24 100.0 38 ........................ TCTGCACGTGAACACGGTTACGTCGAAGCTGCTTAGGT 1277584 24 100.0 43 ........................ ACATAGTCTGCAGTCAGCCCAAGGCACGGCTACTCACCCCGCT 1277517 24 100.0 45 ........................ CCGCCCTCGCCCATTTGTCGACTTCGTCGAACCATATACCCTCGG 1277448 24 100.0 40 ........................ TATGGTGGCCCCCAGCATGGCCTCCATCCAGCTAGTCTTA 1277384 24 95.8 38 ......C................. TGAGTATGGCCGACTCGGTTACAGCCGAGGCTCCGGAG 1277322 24 95.8 11 ......C................. GGTAGTCGTTG Deletion [1277288] 1277287 23 79.2 0 A...A...T...-.......G... | G [1277285] ========== ====== ====== ====== ======================== =============================================== ================== 20 24 98.5 39 GAATCTTCGAGATAGAATTGCAAG # Left flank : CGACCTCCAGGGCGCCTGACACGGCAAAGACGTCACTAACACCCAAAACAGGATACCCCCTCCAAAACGTGGAAGACCGCCTGGGAAAACCCTTAGCATCCCGACAGCCCCAAAGACTAGCCCCCATTTCCCATATTCCCCTCTTCCGTGGTGATGTATATACGTTTAGATTGGGGTAGTGTTTATTAGGTTTGGTTGGGACCCCCTCTCCTGTTGTATATATTTTTGTGTGTGGTTGTTTTTGTATCTCAATGTTTTCCCCCCAATCTGGGGGAGTATATACTCTTATCTCGTGGGTAAAAGTTATTAGGCCCTGTGTGAACCCCCCTTATGGCGAGGCCCCCGGCACAGGCCGGGGGCCGGTGTGGTAAGCCCCGGGGGCCGGGGGTTTATCTATGTGATAGAGTTGGCTACGACCCCGCCCCCGGGATGGCAGGGTGTGGTATGGAATATAGTATCGGGTGTGGATACTACAACACACACCAACAAAACCATGTGCA # Right flank : GTGTTGGTGGGCCCGCGGGGATTTGAACCCCGGACCTCCGCCGCGTCAGGGCGGCGTCCTAACCAGGCTAGACGACGGGCCCTGGGCCCCAGTGGTATCAGTTCTTATCCGGGCGGGGTCTTATAGGTTTCCGCCTTTATGCTCTAGGTTTTACCCTGTGGTTCATACTATTCTTCCTGGTTAGCGGCCTAGCCGCTGTCCGGGGGTGTCTTTAGCCTTATGCCCAGGTTTAGCTGTTACGAGGTTAGATCCGAGTTTCCTGAGCTTGAGAGGGGTATTGTCTATCTTGACAATGCTGCCAGCACTTTGAAGCCAAGGCGTGTTGTGGAGGCTATGAGGGAGTTCTCGTATAGGAGCTATGCCAACGTCCATAGGGGTGTGCATAGGCTTAGCATGGAGGCTAGTAAGGCCTATGAGGATGCGCACGAGGTTGTCGCCAGGCTGGTCGGGGGGAGTTGGGACGAGGTCGTGTTCACCCGCAATACTACGGAGGCGATGCA # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAATCTTCGAGATAGAATTGCAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.50%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA //