Array 1 293678-296051 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCKP01000002.1 Moraxella catarrhalis strain 107/374/3 NODE_2_length_358206_cov_16.009263, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 293678 28 100.0 32 ............................ TTTGCCCCCTTTGCCGTCATCCACCATCTCAT 293738 28 100.0 32 ............................ AAAAGTACGCTACAAACCGCTGTAGGTAATAT 293798 28 100.0 33 ............................ CATATTGATGGTCGCCTCACCTGATACCGAAAA 293859 28 100.0 32 ............................ ATTGGAATAGACAAAAGTGGTCATCTCTAATG 293919 28 100.0 32 ............................ ATATCGTGGATGAATAGGTGTATATTCAAGCT 293979 28 100.0 32 ............................ ATTCTGAAGTTTTAGTTACAAGGTTTGGGTAC 294039 28 100.0 32 ............................ ACCATGGGCGGAGACGGTGGTGGTCTTGATGA 294099 28 100.0 32 ............................ TTGCAGACCAAGCTCTGATGGTACTGCTACTT 294159 28 100.0 33 ............................ AACCCCAATTTGGGGGCAAGTGTGGACATGGAT 294220 28 100.0 32 ............................ GCCGATGGCTTCTTGGAGCATGGCAGCCGCCC 294280 28 100.0 32 ............................ TGCAAACAGCTCATCACTGATTTCAATCACTT 294340 28 100.0 33 ............................ TTATTTTTGACAAAAAAAACAAACCCACTCATA 294401 28 100.0 32 ............................ ATATCCAGCGCCATTACCAGCCACCCACTGCA 294461 28 100.0 32 ............................ GGTATTAACAGCAAGATACCAAGCATTGAAAG 294521 28 96.4 32 .....A...................... ACGATAAAACTGGGTCAAATTGCCTTGTAAGC 294581 28 100.0 32 ............................ AACTTTTTCACGCCACCGAAGATAACTGTTAT 294641 28 100.0 32 ............................ AGTTTGGGATTGCGGAAATGGATAGATGTTTA 294701 28 100.0 32 ............................ TCTTGTACCATCTGAGTATTTTTTCATCATTC 294761 28 100.0 32 ............................ ATGTAAACCAAATCACACAAACCTACCAATAT 294821 28 100.0 32 ............................ TCGTGAAGTTATCAGCTTGCAGGGCATTAATA 294881 28 100.0 33 ............................ CAAAAAGTCAAATCCGACTGGCAAGCCAATTAC 294942 28 100.0 32 ............................ CAGAGCTCGTCAGTACAACATGGCTATCTGAG 295002 28 100.0 32 ............................ ATTTAGTGCTTATGTTGATGTTACTCAACAAA 295062 28 100.0 32 ............................ TAAATGTTGCATTAATCAGACCAACAATAATA 295122 28 100.0 32 ............................ AAGCTAAAGAATTTAAAATCAAATGGCAACCC 295182 28 100.0 32 ............................ AGTGATAGGGTATTTTCCTGCCACTTTCAAAT 295242 28 100.0 32 ............................ ATCAGATGATGGCAGGTGGTTTTTTGATTATT 295302 28 100.0 32 ............................ TGCTTGTTCACGCCCTGCCTGTGGACTAAAGT 295362 28 100.0 32 ............................ ATAAGGCTACCGCTCCACACCCATTCGGTCAT 295422 28 100.0 32 ............................ ATGACAACAAAAAGTGAAAGAGTTAAGCTTAC 295482 28 100.0 32 ............................ TGATAAATCTACACCACGATTTTGTAATTCAT 295542 28 100.0 32 ............................ CAGCTGGCAGGCAAAGCAAGCACAGCGTCAGT 295602 28 100.0 33 ............................ TGTTGATGCTCCTATGTCGTATAGCACCCCGTC 295663 28 100.0 33 ............................ ATTTTTCTCAGAAGGCGGCCGCCTAGTTTTAAA 295724 28 100.0 32 ............................ AAACAAGTCGATAAGATTATTGAACCACTATT 295784 28 100.0 32 ............................ GACGATTACACGGCTTGAAGTATTTAGCCGAT 295844 28 100.0 32 ............................ AATCAAATATCTGCTGATGAGATAAAACAAAC 295904 28 96.4 32 ...........T................ CACCCAAAGACATTTCAATTCAGTTACTTAGA 295964 28 100.0 32 ............................ GTTGAGCTGTATCCTCTGATTCTCTTATTGAT 296024 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 40 28 99.8 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TGCCTGTGCCAAGTAAAATGACCGTCGTGTTGGCGATCGGAATATTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGGTATAAGATACGCCCATCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAGTGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATAATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTCAGCGATTAAAATGTTTTAAGATAACCCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGACTTGTTATTTCTTATTATTTTGGTTTATACTAACT # Right flank : ATTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGCAATTTATGACCGAGCAAACCACCGAACAAACCACTATGGAAGAGATTATGGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCCGCGCGTGCCAATGCCGAAAGCTATAATGCCCAACGCCGCATGGAACAAGAAACCGACAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAATCTAGAGCGCGCCATTAAAGATACTGAAGAGACAGGTACAGATGACGCATCACTTAAAGGCATTCGCCTAACACATAAAGTACTGCTTAGCATCCTTGAGAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //