Array 1 1227851-1227699 **** Predicted by CRISPRDetect 2.4 *** >NZ_NROE01000001.1 Cronobacter dublinensis strain cro964A1 contig1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1227850 29 93.1 32 .C...C....................... ATGGCTGAAAATATCAAATTCGATGAACGCCT A [1227846] 1227788 29 100.0 32 ............................. GACTGCCGGACGCGTAAAAACGCGCTGCGCGA 1227727 29 75.9 0 .C...C..............A.GT..A.C | ========== ====== ====== ====== ============================= ================================ ================== 3 29 89.7 32 GTGTTTCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGACGCAGGTCACGCCGTCCTCCGCCGTTCCGGCGCCGACCACGTACTAAGCCTGCCACAGCGCCTCTTCGGAGGCGCTTTTTAGTAGCGCCACCCGTAGCGCGACAAATCGATTTCTCCTTTCCCGGATACCTGCACGCCCTCTGCTATCAACGCCTGGCGCTGACGCTGTAAATCTGGCCCGGTCAGTGAAATTTCCCCACGCCGGTTCACCACGCGATGCCACGGTAAAACGCTGCCCTCCGGTAAACGCTTTAACACGCCGCCCACCTGACGCGCCGCTCGCGGCGAGCCTGCAAGCCTTGCCACTTCGCCATAGGTTGTGACGCACCCTTCGGGGATAGCGGCGACAATCTGGTAAACGCGTTGCGGGAAGGTGTCGTGGTTGTGCATGGGGGGCTCCTGTCAGTCAGGGTGTAAGCATAAGAATGCGCGGCCAGAAGGGCAACTATGAGTGAAAACGTCGCGCGGTCAATATCATTTTGGTGAATGGAATCC # Right flank : TTTGGAATAATTCAAACGAAGGTTTAGATTCTTCGGGAACTAGAGTTGTGATTATTTTTAATAAATATGATAACGCTTCTTAAAATAGCTAATTTGTATTTTAGTTAATGGCTTTTAAAGCTTTATTACAATGTGTTTTTCGGAAATCATATAGCATTCCCTGACCGTTTTTTTAAAAGGCAATTTTATATGGCATGGGATAAATATGCGGCGATAAGACACGTGCGTGATCGTGCTTATAGCCAAAGTCATCATAAATGCGAACTCTTTGTTAAAGAGGCTATTATTGCGGGTGGAGTAAATATCTATCCCACACCCTCAGCAAAAGATATGGGCAAGGCGTTGATAAAAGAAGGGTTTTATTAGGTTTATGGCGAGCCTGTTGCTGGGGATGTGGCGGTGATCCAGGCAATACCCGGCCATCCTTATGGCCATGCATGCATTTATGATGGGCAAATTTGGATAAGCGATTTTCGACAAAAAACGCTCTACCCCGCAGA # Questionable array : NO Score: 3.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.49, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTTCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [2,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.5 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 2 1245724-1244860 **** Predicted by CRISPRDetect 2.4 *** >NZ_NROE01000001.1 Cronobacter dublinensis strain cro964A1 contig1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 1245723 29 100.0 32 ............................. CGCTCTTGCGGGGTCGAGGTAACACCCAGGAT 1245662 29 100.0 32 ............................. CCGTGGTGCCAGCCGCATGGAAGGCATCAAAC 1245601 29 100.0 32 ............................. CGCTGGGTGTTGAGCTGTCACTGCTGGAGCGC 1245540 29 100.0 32 ............................. TGCGCGATTGCCCAGAGCCAGTTCCGCCTGAA 1245479 29 100.0 32 ............................. CTCCCGACGAATGTCAGCCTGTGCTTTCTGGA 1245418 29 100.0 32 ............................. GGCGGGAAATACGGCGTTTTTGAAGACTGTAT 1245357 29 100.0 32 ............................. AATGGGTCAAAGCGCAGATCCGAGAAAACCCT 1245296 29 100.0 32 ............................. GGGTTAACTCTCGACCGCTCGCCAATGACGCA 1245235 29 100.0 32 ............................. AAACAGAAAGAGAAAAATATTTAGGCAGGTTT 1245174 29 100.0 32 ............................. GCTCCAGCCTGAAAGTAAACCTCAACGGCAAA 1245113 29 100.0 32 ............................. CAATAATGGGTTTGCGTACCGCTATGATGACG 1245052 29 100.0 74 ............................. AGGAGCCGCGCATATACGCCGATGCGGTCGGCGTGTTCCCCGCGACTCCTGAATCGTTGGCACCAGCAGAAACG 1244949 29 100.0 32 ............................. TAATAATATTGCTGTCAAATCTTTCTGGTGTA 1244888 29 93.1 0 .............T............T.. | ========== ====== ====== ====== ============================= ========================================================================== ================== 14 29 99.5 35 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GACGAAAGCTTTAAATGGATGATGGCGCACAACATCGCCTTTATTGTCGTCAATATCAACATCAACTATCGCCGTCCTGCGGTGCTTGGCGACATGCTGACCATCACCAGCGAGATGAAACAGCTCAATGGTAAAAGCGGGGTGCTGAGCCAGGTGATTACGCTGGGGCCCGAAGACGAGGTGGTCGCCGACGCGCTCATCACGTTCGTGTGTGTCGATCTTAAAACCCAGAAAGCGCTGCCGATTGAAGGCGAACTGCGCGAAAAACTGGAAAATATCACAGGGTAAATTCTGCAATCACGCTGCCTGTGCGTGTAGTCATGGACTTCCACTCACCGAAAGCGAACAATCCGGTAGATGTTATCGGCCCGAAAGCACGCGGAAAAAAGCTTTTAAAATCAACAGGGCAGCCGCTCTTTAACAAGATGGGGTGTGAAGTAAATGTTGGTAGAATGTTGGGGTCGATAAAATTTTAAAGAAAACAACAGGTTGTTTTTAGA # Right flank : AACCCGTTCGCCGCGGCGCAAAAAACGCATCTCTGTCACTCGTGCCAGCCCGAATATCCAGCTAACCACCCGCCAGGGCAATCCCTCCCAAACCCCATATTCTTCAGCGGCGTTTATACTTCAAAGCCAACATGAAATTTCGCAACACTGCGCAACGAAGGAGAGGCTATGCGGGTACACCATCTTAACTGCGGTTGTATGTGTCCTTTTGGCGGCGCGCTGTATGACGGCTTCAGCAAAGGGTTGCACGCGCATCTGATTTGCCACTGTCTGCTGATTGAAACTCAAAATAACGGACTGGTGCTGGTGGATACTGGCTTCGGCTGCGACGATATGCGCCATCCTGGCCGTCGTTTGCCCCTCTTTTTCCGGGCGCTGAATAACATTCAGTATCGCGAATCATTAACGGCGCTGCATCATATTAAGTCGCTCGGTTTTAAGCCGGAGGATGTACGGCACATTGTGCTGACGCATCTGGATTTCGATCATGCGGGCGGCAT # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.21, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //