Array 1 171285-172900 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZMH01000008.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712444, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 171285 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 171346 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 171407 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 171468 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 171529 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 171590 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 171651 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 171712 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 171773 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 171834 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 171895 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 171956 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 172017 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 172078 29 100.0 33 ............................. GCTTTAGCCACGTTCCCACGCGCAAACACCAGC 172140 29 100.0 32 ............................. GTGATCGCGAGTGCTGAGGCTGAGGTTGAAAT 172201 29 100.0 32 ............................. GTGAGGTTTTTTTTGAGGAGTCCGCCCAATGA 172262 29 100.0 32 ............................. AGGCTCAATTGCGTGAGGCTTGGGAACGCGTC 172323 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 172384 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 172446 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 172507 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 172568 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 172629 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 172690 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 172751 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 172812 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 172873 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 189408-192121 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZMH01000008.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712444, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 189408 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 189469 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 189530 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 189591 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 189652 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 189713 29 100.0 32 ............................. GTAGGCGTGGAGCCTTGTCACTGGCCGTGAAC 189774 29 100.0 32 ............................. GTGGCAACAACGTAGCTAAAGAGATCGGAGTC 189835 29 100.0 32 ............................. GAGGGCGCGGAAATCGGCAATAAGGTCCGGGC 189896 29 100.0 32 ............................. TGGGCCATTGGCGTCTCATCAGTATCAACACG 189957 29 100.0 32 ............................. GCAACCATCGAACTACCCGCTTCAAAATCACC 190018 29 100.0 32 ............................. GGAGTTAATGACAAATTTGAGGAAAAATGTTG 190079 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 190140 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 190201 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 190262 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 190323 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 190384 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 190445 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 190506 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 190567 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 190628 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 190689 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 190750 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 190811 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 190872 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 190933 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 190994 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 191055 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 191116 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 191177 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 191238 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 191299 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 191360 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 191421 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 191482 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 191543 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 191604 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 191665 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 191726 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATCCGCACTGCCT 191787 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 191848 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 191909 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 191970 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 192031 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 192092 29 93.1 0 A...........T................ | A [192118] ========== ====== ====== ====== ============================= ================================ ================== 45 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //