Array 1 1-307 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFMTW010000200.1 Alicyclobacillus sp. VF-FSL-W10-0049 NODE_200_length_307_cov_43.562500, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 1 28 77.8 35 --------............................ GTTTTTTCGATGGCTCGAATCGAAAGGCTATGACA 64 36 100.0 38 .................................... GGTCCGTCAGGTAGTTGATGCTCCCATCGTCCTGTAGC 138 36 100.0 35 .................................... GCGAGTTCCCATACCGCTCAACTCCTAGTGGTTCC 209 36 100.0 33 .................................... TTACTTTCAAACTGCAGCTCAAACAGCGGTGCA 278 30 83.3 0 ..............................------ | ========== ====== ====== ====== ==================================== ====================================== ================== 5 36 92.2 36 GTCGGATCACTGAGCGAGCGATCTGAGAAGTGGCAC # Left flank : | # Right flank : | # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:0.61, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGATCACTGAGCGAGCGATCTGAGAAGTGGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.80,-4.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 1 1-1041 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFMTW010000111.1 Alicyclobacillus sp. VF-FSL-W10-0049 NODE_111_length_2009_cov_65.775916, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 1 31 93.9 35 --............................... CGCATGTACAGGACCACGCGGGCTTGGTCGTCCCC 67 33 100.0 34 ................................. AAAGGTACTGAGCTACCATTCTGACGAGCTACCA 134 33 100.0 35 ................................. CGCATGTACAGGACCACGCGGGCTTGGTCGTCCCC 202 33 100.0 34 ................................. CAAAGTAGCGGTTCGCAGACCTTGATATCGAACA 269 33 100.0 35 ................................. TTTGTCACCGTAGGCGCCGGGTTTGTAATCGATGA 337 33 100.0 33 ................................. CAAACATCTCCCACTGTGTCGGCAACGCCGAAC 403 33 100.0 35 ................................. GTCGGATGGTGCGCCAGAAGTTGCAGCCATCGTGC 471 33 100.0 35 ................................. TCCTGTAAGCTTTACCCAGGTAGAACCAGAAACTG 539 33 100.0 33 ................................. ATGAATAGCGGAGAGCTTTGTAGCAACGTGTTA 605 33 100.0 34 ................................. ATGTCGTCGTCATCGTAAAAGTAAACGCGGCCCG 672 33 100.0 35 ................................. ACCGATTCGACGGTGCTGGTACATGGACTGTCCAG 740 33 100.0 34 ................................. CTTCAGGAACGGATCCAGTTGATACCGAGCACAG 807 33 100.0 34 ................................. GCCAGGACGCATGCCAGTGTCGATTAACAGGCGG 874 33 100.0 34 ................................. ATCCCGAGCCATGCGCAAGTTGGCGGTTGATAAG 941 33 97.0 35 ...............A................. GTATTCAAGACAAGAATCGATGCTATCCCGAATTA 1009 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 16 33 99.4 34 GTCGCATCCCGCGAGGGATGCGTGGATTGAAAT # Left flank : | # Right flank : TTTCGATCCACGACCACCTTTGACCACTCGGTAACGACCTTTGAACCGCCAAAACTCAGTGTATCCTTTAGTAGATTGCACTCGATGGCTTTTTCGTCAAGATCTAGCCGTGGAATTTACACCACTACCTGAGACTCTAACTTCCTGCCCCAGCAAGGAACCGAAAATGACGGTCAGAGCAATATCGTCCATGTGGAACTGGGTGTTTCTGCCCTTGCGTAATCCATGTACCCAAAACTTCCTGTCAATACCCGTTCCCAAAACAAAATCTATGAGACCAGCTGCACCGCCAAAGGAGGTGGCGGCATTCAAATCGTAGCGAGTATGAATTGTAGAGCTTTTACGAACAAACTGGCTTCGTGTATCATTATATTGTTTCACCCAAAAGGTGCTCCTTCCTAGCGAAGATGTGGTTCTTGACAAACTCATCTGAGCCATACGGGGAGCGACTTTTCAATTATTCACACCAGTTCATGAGGACACATCGTCGAAATCCGGGT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCCGCGAGGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCATCCCGCATGGGATGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-7.60,-7.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 51709-50935 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFMTW010000020.1 Alicyclobacillus sp. VF-FSL-W10-0049 NODE_20_length_60825_cov_63.062856, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 51708 37 100.0 34 ..................................... TTAATATCTTGTTCGGTATGATCCACCCATCCAG 51637 37 100.0 36 ..................................... AACCTTACCAATCGCTCGTGTTCCGCTTTAGCTTCA 51564 37 100.0 41 ..................................... AGCTAGCGTGTCGTCGTCAATACGCTCAGCCGTGTTCGCAA 51486 37 100.0 38 ..................................... CGCCAGTTCGTTGACCTCATTGGCCTTAGCTTGCAAGG 51411 37 100.0 36 ..................................... AACAGATTGCGCAGCCTTAGAAAAACTGCCAAAATG 51338 37 100.0 37 ..................................... GCGTTTTTGCGGACGGCACGAAAGAGTTGTTTAACAG 51264 37 100.0 37 ..................................... GCCGACGGCTATCTATACAATGGGCGAATGGATGTGA 51190 37 100.0 35 ..................................... CTGCAAAGACGTGATGTAGCCGATAGGTTGACCAC 51118 37 100.0 36 ..................................... TTGGGCGCCTGCTGCCGCTGGGACATACACGCTCAC 51045 37 100.0 37 ..................................... AAATTTCGACGCGACAACCTCTGAAACTTTGTCATGG 50971 37 89.2 0 .....................A..A.TC......... | ========== ====== ====== ====== ===================================== ========================================= ================== 11 37 99.0 37 GTTACTCCGCAGGGATCGCCTGCGGCATCATTGAAGC # Left flank : TTAACCATTCAGGAATAGGGGCTAAGGCGAGCGAACAGCCATATCCATTTGGTTTCGAACTTGTGAGATCCGGACGTTCATCCAAGGAACGGATTCCCGATCGATTTGGGCAATACATGAGAATTACGTTCGCAGAACCTATCACTGGGCCTGTCGTTTTTGGATATGGGTCGCATTATGGACTTGGTTTGTTTCGGCCGGCGCTTTGACACCATGTTTGTTACAAGTAGGTATATCGTGCAAATGGAACTTGCTGTATTATGACAGTTTATACTTGTGAGTTAACCCGCTACATGTATGAGATCAGCTATTATCTGGATACCGCGCGAACCTGAAGTGATGCACAATATGGCGGGGGTTCTCGCTCTACAGAACGTCAGGTTGGGGCGCCATTTGTGACAGTCTTTTGTTTACGAGAGGGGGATTGGGAAGATGAAGCTCCGCCGGGTTCGCGCAGATAACTCGAAATGTAGCACTGCAATTAGGACGAGAGCGCTGCA # Right flank : ATCCTATATGGAACGCCAGCCGTTACTGGTAAGGGCAGTGTAACCTCGCGGACATCGTCTACAAATCGTTCTGCGCGCAAAGTACAGCGGGAGTATGTCCGGCCTGAGTTCCAAGGGTATCAAAGCCCGGAAAACAGCAGCAGCGGTCTTGCGGGCTGGACTAGCGCTTCGGTCAGCAGCCAGCCGCTTTCGTTCGGCCACAGGATCAGCGTCACGCCGTCGAAGGGCGACGGCGCATCCCATTGTACATCGGTCAGCCGGTTTGTTTGAGACTGAGATTTCGTGAAATACTCATTGCTGTTGTTGATCGTTCATCCTGTAGCTCTTCCTTCGAGGAAAAAAGTGAAAAGCTCAGGCAACGCTGTCCAAGTCATCTAGTCCACCCATCTGATTGAGCAGGGGCTGGAACGCGTTTCCGTTTGATACGAAGGTTACTATGTAGGCGATTTGTTTAGTGACCTTGTTCACGTCCGATTGCACGTTCTTCAACTTTTACTGGT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACTCCGCAGGGATCGCCTGCGGCATCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.90,-13.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 56357-55966 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFMTW010000023.1 Alicyclobacillus sp. VF-FSL-W10-0049 NODE_23_length_56356_cov_68.178627, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 56356 36 100.0 33 .................................... TTACTTTCAAACTGCAGCTCAAACAGCGGTGCA 56287 36 100.0 35 .................................... TTAAGTTCTTCAGGCGTTTCGGCACGCTGCATCAC 56216 36 100.0 36 .................................... ACGAGGCACTCGCACAACTCCAGAGCGGCGAATTTG 56144 36 100.0 35 .................................... GAGCCTCGATGGTATTCGTAACCGCAACGTTCTGC 56073 36 100.0 36 .................................... TGGCTGTGTTCCATTAACTGTCGTAGCCGAATTGGC 56001 36 97.2 0 ..................T................. | ========== ====== ====== ====== ==================================== ==================================== ================== 6 36 99.5 35 GTCGGATCACTGAGCGAGCGATCTGAGAAGTGGCAC # Left flank : | # Right flank : CGTACATCATGATCATCGCTCTGAGCGGCCAGAAATGTCGGATCACTGAGCATAGTAAAATACGTTTGCGAGGTGCTGACATGGATCAGGAATTGAAAAACTACCTGGATGAAAAATTTAAGGCGCAGGAAACAAGGTTCACCAAAGTCATCGAAGAACGATTTACCAAAGCGCTTGAAGAACAAGAAAAGCGGTTCACCGATACGATGACGAGATTCGCGACAGAGATAATCGATCAATGAAAGAGCTACGCCGAGAAATCCGACCTAAATGTAGATCAAAGGCATTTAGCGGAAATGTACGGCACTCACGAACTAGTACTGAAACGACTGAAAGAACGTCATTCCGTCGAGGGGGAGCTACGCTAAACGTTGGCACTCAAGTTGGATAGTCATATGCTCTAGGCAACCTCAATAACCGCTAGGGGACCTACGGATAAGATAAGTAAAGTCCGATAGAGCTTTCCCAAACCGCCTCCTGCGGGATTCGAATCCCTTTGA # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGATCACTGAGCGAGCGATCTGAGAAGTGGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.10,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 1 33175-35071 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFMTW010000037.1 Alicyclobacillus sp. VF-FSL-W10-0049 NODE_37_length_35259_cov_68.914164, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 33175 30 100.0 38 .............................. ATGTACCTGTGTTGGAGTTGTCACCACAAGGCGACAAA 33243 30 100.0 39 .............................. TTTTGATGACAGGCGAGCACGCGGGCGACGCGCACTCGC 33312 30 100.0 36 .............................. TCGCGTACAGCAAAGCAACAAGATGTACCAACATCC 33378 30 100.0 35 .............................. TACCGAACGACGATCGTGCTCGTGCGTTCAATCAC 33443 30 100.0 38 .............................. TCGAATCCATCAAACGGTTCGATTTCCAACAGTAATAT 33511 30 100.0 37 .............................. ATGCTTGCTTAACCTCGCGTAATTCACGAACCGTCAT 33578 30 100.0 35 .............................. TTCTTCATCCGCTCATCTACGGCATCCCAATATGG 33643 30 100.0 37 .............................. CAGATAATCCACAAATACAACTACACGTTTGCTAGGG 33710 30 100.0 37 .............................. GTGCAACGCCTTCTTCCGAGCCAACCGGTATTCCTCA 33777 30 100.0 38 .............................. GAAAAGGCGAGACCCGAATGGGAAGCAGTACTGAAACA 33845 30 100.0 37 .............................. AACATTTCCTACGCGCACGCTGATGCAGTATGTATAC 33912 30 100.0 37 .............................. TCGGGCAGCGCGGAGGAAACAAGCGGAAATATCAATC 33979 30 100.0 38 .............................. GTTCGTCGCGTTCAGCTATCACACACTCTGCAAGTTTC 34047 30 100.0 36 .............................. ATTGGGTAGACACATATGTCCTGGCGGAATTTGTTG 34113 30 100.0 39 .............................. ATCTCGCCGCCCGTGCTATCATTCAAGTGCACTGTATGG 34182 30 100.0 35 .............................. TAGGATGCCTACAATCGCCGAGAAGTGCTCCTGGA 34247 30 100.0 37 .............................. AACATTTCCTACGCGCACGCTGATGCAGTATGTATAC 34314 30 100.0 37 .............................. TCGGGCAGCGCGGAGGAAACAAGCGGAAATATCAATC 34381 30 100.0 34 .............................. GCAAATGAGCACGGATCTAAAATACGGGAGATAG 34445 30 100.0 38 .............................. CCACAATTGGGGGAATGGTAAAATGTATCAATGGGCTG 34513 30 100.0 38 .............................. AAGGAATGGAAATGTAATGTGAGTACGTTATAAGGTAA 34581 30 100.0 37 .............................. AGCGAAGCTGAAGAGTATATGAATATGCGACTAGAGC 34648 30 100.0 36 .............................. GTCAACGAGTAGATGAGCCCTTGCACACGATAACAG 34714 30 100.0 35 .............................. TCGTCCCTGCAGGATTGGCTACGTCGTGAATCCAT 34779 30 100.0 36 .............................. TGATGAATGCGACGGACGAGATGGGCGGTGAACTGC 34845 30 100.0 35 .............................. ACAGATCAATCTTGGGCAAAGAGTCCAACCAGTGA 34910 30 100.0 36 .............................. ACAAGAATGGGCACGCGGTTAGAGGTGGTAAACCGA 34976 30 100.0 36 .............................. GAGGAAGCATTATCATTGACGACTCACACGATTTCG 35042 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 29 30 100.0 37 GTTGATAGCCTGCCTTAGAGGGATCGAAAC # Left flank : CCCGTTTGCGGCACGTTGGTAACGGAGGTGGCGCAATGTTTGTCATTGTCATGTACGACGTTCACGTCAAGCGTGTTGCCAAGGTCTTAAAGACGTGTCGGAGATATCTCTATTGGGTGCAAAACTCCGTACTTGAAGGAGAGATTTCCAAGGCTGATTTTGCAGCTCTGAAGCGAGAGCTTGCTGAAATTATTTCACCCGATCACGACTCAGTCCTCTTCTACACTTTCCGTACGACGCGGTATACGAGTCGTGAGAGCATTGGCATGCAAAAGGGAGGGGAAGATCGGTTCCTGTGAGCCTGACTAATGCGGGCCCTGGCCGGTCCAACATGTCGTCGGTCATGGGTCTCGCCAAAATGCCGGGGGATCGACGACAGGCCCCTATACATCGATTTGCCAATTACAGCGCTGGTGTTTACCAATTTGCTAGCTGACTGATAAGATGGTGATGGATTGGACAGTGCAGTTGAATTTGGCGTGTTGATGCGGTGGAAGTGG # Right flank : AATTTATATACACGCGACTTTATTCGTGTTTTTCGCAAGTAAAAAGTGCAGAGAAACGCTGCGGATTTGTGCATAGGCACCGCAACACAGAAGATTACGACGACTTCGTTCCAGATAAGGCATGTTTCAGGCGGTAGCTCTCGCCGGTGAACGCCAAAACGTGGGCGTGGTGGACGAGTCGGTCCACG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGATAGCCTGCCTTAGAGGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.30,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 64-3125 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFMTW010000047.1 Alicyclobacillus sp. VF-FSL-W10-0049 NODE_47_length_26382_cov_63.376631, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 64 36 100.0 38 .................................... AGCTCCCATGCTTCACCCAGGTGAACGCTGGAACCGTG 138 36 100.0 35 .................................... AAAATTACAGCCGAAGAGGCATTTGGAGGAATTAC 209 36 100.0 35 .................................... GTTACGTCGCAATCTGCGCCGCAAATTGATTATGC 280 36 100.0 37 .................................... GAACTCCGCCGTACCAACCAACTCCTGAGATCTTTAC 353 36 100.0 35 .................................... CCTGCTCAGAAGATGCAGTATCAGCAGATTCAGGC 424 36 100.0 35 .................................... CAATTGCTCGATTTGTCACTGACAACAGACAGTCG 495 36 100.0 34 .................................... TCTGTTGCGTCGCCACGCCAATCTGCCGCCATGG 565 36 100.0 35 .................................... TCTCTCAGTCAGCATAAGCCGACTGCCCACTTGTC 636 36 100.0 38 .................................... GGAACACTCGCATAAGGTTCGATACTTACTCGGTGAAC 710 36 100.0 35 .................................... TCCATCACAGATGATTACGGAGTCGTCACGAATAT 781 36 100.0 35 .................................... GTCCAAGTGATGTCGAACATTGTAATATTATGTGT 852 36 100.0 35 .................................... GGAAAAAGGCTGGATGATCTATCTGTAATATTCCA 923 36 100.0 37 .................................... GCGGTTTACCTTCAAACGAGGCCATCGCTTTGTCATC 996 36 100.0 34 .................................... GTAATTATTAATAAGCGTGTGATAAACATTATCA 1066 36 100.0 34 .................................... ACTGCTACGACGACGGAGATACGCTCTGGATCAT 1136 36 100.0 33 .................................... GTAGCACATGAGTGTATAGGTCTGCGGTAATAC 1205 36 100.0 37 .................................... GCGAACGTCCGATGCCGCACGCGTGTCACGAACGGGC 1278 36 100.0 39 .................................... GCAGTGCATGCACTCATATATAGCGACACTGTCAACAGC 1353 36 100.0 35 .................................... TACATACTGCATCAGCGTGCGCCATAAAGGATGCG 1424 36 100.0 36 .................................... GCCAACATTGCTGAGGCTGTGCCGAGCAGGCTGTCC 1496 36 100.0 36 .................................... TAATTTTGATGGAATAACCAGGAAACGAATGGGATT 1568 36 100.0 38 .................................... TAAGGACTATAGTCAACGAAACTCCGCACATTATGTAT 1642 36 100.0 36 .................................... CTTATTCAGTATGGGGCGAGCAACGTAGATTACGTC 1714 36 100.0 36 .................................... TTCGACCTCGACCGTTGTTCCGAGCGACGTCTACCA 1786 36 100.0 37 .................................... CGACACGGCTTTGTTCGCTATCGTGTTAGCTTTGATG 1859 36 100.0 36 .................................... GCGGATGACCCAATGGTTACGATAGAGGCTATTCAG 1931 36 100.0 35 .................................... ACAGCTTTGTAACAGGTATCTTCGTGGCGCCTGAC 2002 36 100.0 34 .................................... GAGATGTAAATGTGGTAGGGTCTTGCCCGCTTGC 2072 36 100.0 37 .................................... TTCCAGCCGCCGACCGTCTTCTCGGATATCCCAAGCT 2145 36 100.0 40 .................................... GGTCGTTCGGGTCCGCAACAGTGATTACTCCTATCATTGA 2221 36 100.0 38 .................................... CAGTTGAACTTTGGCCCTCTTCTAAATCCTTGGGAATC 2295 36 100.0 35 .................................... AGTGGATCGTCCGCGCTCAACAGTGGGTATTGCAT 2366 36 100.0 38 .................................... GAACAAATCCGTCATCCCGGCAATCCGTGCACACCTTA 2440 36 100.0 36 .................................... TCCTCATAATCAGCGGCGCAGACATACTCCTTACTG 2512 36 100.0 37 .................................... CAATAACACTCGGCAACACTTTTCACCTCCAAAGTAA 2585 36 100.0 36 .................................... TTAAATTCAATTAAAATATAGTTCGAGTGCTCGGCG 2657 36 100.0 36 .................................... TTTATCTGCACGCGGTGGAATTGTTCACATACGAGG 2729 36 100.0 35 .................................... GCCGTAAATGGTGCCATCCGCCCTGTAAAGAAACC 2800 36 100.0 37 .................................... GAGGTTCTTTGATATACAAAGCTCTCATGGAAGAGAT 2873 36 100.0 38 .................................... ACAAGTGTTGGCAAGCGGTCCGATATGGACGCGGCAAC 2947 36 100.0 37 .................................... TCTCTAAAACCGTCATAACAGCGTAATTTGCGAGGTC 3020 36 100.0 34 .................................... AGCACAAGTCTTCAGTAGACTATCAGGGCATCTA 3090 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 43 36 100.0 36 GTGCCACTTCTCAGATCGCTCGCTCAGTGATCCGAC # Left flank : CTCAGATCGCTCGCTCAGTGATCCGACGGATGGCAAGCCTGTCGAGGTGTTTGTCTATCACGGG # Right flank : CGGCGGGCGCTCGCAGCCCTTGAACCACGCGGAGATCCAAGCCCATAAACGAGCACTTGATGTTTCCCATCGATTTCATCCCGTTCCATTCTCGTTCTCTCCCGTCATTTCGCCGCGAATCCCTTGTCCCACCTATGTTTCGAGCGCCTCCCAGGGTTTTCGCCCTGAACAGGCGCTCGAAAGGTCAGAACACTGAGCGAGCGTTCTTTTTGAGAAGCTCAACGGGCTTTGCCACCTGGAAAGTGGCCATTGGCACACCCGTTGAATAATCTGTCCTTTAGACAAGTTATATTTTACACGTTTTTGAAGTTCACATCAAATCCTCAAAACACCAATCCCTTCAAATCCAATGGTACGAAATCCCGTCCAATGCACGACATATTCCGCTCGGCAGCGTTCGCCTGCACAGTTCCAATCCTTGCAAAAATGACTTGATCCATCGACTGATGAATCACGTCCAAGAGCAATTGCTTCAACTCAGCCTCATCCTTTTCAGTGAG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCCACTTCTCAGATCGCTCGCTCAGTGATCCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.10,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 1 476-709 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFMTW010000145.1 Alicyclobacillus sp. VF-FSL-W10-0049 NODE_145_length_709_cov_67.075410, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 476 33 100.0 35 ................................. CGCTGTGAATACGTCCCATCTCCATTCGATACATA 544 33 100.0 34 ................................. CCATACGGACTCACAGTAGTGGTCAGTAGTTGGA 611 33 100.0 34 ................................. AAAGGTACTGAGCTACCATTCTGACGAGCTACCA 678 32 97.0 0 ................................- | ========== ====== ====== ====== ================================= =================================== ================== 4 33 99.2 35 GTCGCATCCCGCGAGGGATGCGTGGATTGAAAT # Left flank : AGAAGAGGTTACGGCTTCTTTTTTGGCTCATACTCGATGAACTCTTCGGAACGGATTTCGACATAAGCAAGGTTGTTGCATAGATCATTCAGCAGCCCCGAATTACGGTCAGCGTGTTCAAAATTCAGTGTTCGAATGTGTTGTTGATGCCACGCAATACGCAGCTTTAAAGTTAAAGTTGATTGACCTTATTGATGAGGAGCAGGATAGCCTTCGATTTTATCAATTGGGCAATAACTATAAAAGCAAGGTAGAGCATGTTGGAATCAAAGAGTCGGTCGATCTGGATGGTCCTTTAATTTGGTAGTGCGAATGTGGAGCGCACATGATTTAGAGAGGGCATTCGCACCATGAAAATGGATTATATTGGTTTGTCATTAGGGTTTATGTGAATTTTACTTTAGGAGTCTATTGGATTTGTTTGATTTTTTATGAACAAAATGTTGGTTTAGTTGCGTTTTTATTGAAAAATGCCG # Right flank : | # Questionable array : NO Score: 8.82 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCCGCGAGGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCATCCCGCATGGGATGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-7.60,-7.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 164-868 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFMTW010000129.1 Alicyclobacillus sp. VF-FSL-W10-0049 NODE_129_length_1070_cov_100.467559, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 164 30 100.0 37 .............................. TCGAGAGATGGTGTTGAAGAACTCAAAAAGGAATTGT 231 30 100.0 38 .............................. ATAAACCCACCATTCATATTCAGTTTGATTTACGTCCC 299 30 100.0 36 .............................. ACACAATGGAAATGTGTTAAACTCGCCAGCATCTCA 365 30 100.0 38 .............................. TAGCTTTATATGATGGTACGTATTAAGCGGGAGGGTAC 433 30 100.0 37 .............................. ACACTAGGGATGATAGGGACGCTGTGGTGCAGTGGAT 500 30 100.0 37 .............................. CCTATCATCGCTACAAAAAAGGACTGGACATCGCTCT 567 30 100.0 35 .............................. TTGCGAATACTGTTCCTACACCACCGGTCTCTACG 632 30 100.0 38 .............................. GAGCATTCCAGAAGTGATGAACGTAATTCTTCGTCTGA 700 30 100.0 38 .............................. AGAGAATTTTTGTAAATAGTGCGAAGTACGAATTTGAA 768 30 100.0 41 .............................. TAGTCGTCATGAGTAGCTGCCCATGCTGCTTTGGTCATTCC 839 30 93.3 0 .................A....G....... | ========== ====== ====== ====== ============================== ========================================= ================== 11 30 99.4 38 GTTGATAGCCTGCCTTAGAGGGATCGAAAC # Left flank : ACCCTCAGGTCTTCGACAAACCAAAGGGTAGAATTAATAGAGTGGGTGTTGCAAGTGCCCATTCACTTTTCCGCCCCGTAACAACGCAGGCTAGCTCTGTAATTTTACGCTGCGGTTTTCTGCACTTTTATTATGCGGCATACATTTATTCGCCGACTGTTCAG # Right flank : CAGACCGTATTCCGCGCGGTCAGCTGCATCCATCCGGTGAGCGTCAAAAAGGGCACACCTAGTATTTCGCCAGATGTTATGGCATAAAAAACAAATCATCCCTGCCCATCGGCAGGGATAATTGTCGTGCTTATTTGGTTTTACGCCGACCTCAATGTGCTCCGGTAGCTCCTCTGACCATGGCAGTAGGGTGTTTAAGGCA # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGATAGCCTGCCTTAGAGGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.30,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA //