Array 1 728673-727603 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLUM01000012.1 Pseudomonas aeruginosa strain WH-SGI-V-07287 WH_SGI_V_07287_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 728672 29 100.0 32 ............................. CTGGTTGGCATCAATGCCGAGCAGCAGAAACG 728611 29 100.0 32 ............................. GCTCAGCTGCTGGGCCAGTTCGCCACGGTCAA 728550 29 100.0 33 ............................. GTGAGGGGCTACCGGTATTGCCGGACAACCTGC 728488 29 100.0 32 ............................. GGTTCGAGTCCACTTCCCCCCACTCAAGAGCC 728427 29 100.0 32 ............................. GCCCCGCAGTCCGCCGCATAAACGCCCTCTGC 728366 29 100.0 33 ............................. ACATGGGAATCTCCGGCGGGCGAGTGGGCCGGA 728304 29 100.0 33 ............................. GCATGAACCAATCAACTATCACCGACGCTCAGG 728242 29 100.0 32 ............................. GCGATGCCTAGCCCATCTGATTCTCTGATTCC 728181 29 100.0 32 ............................. ATGGTCGACGTGCTGATCCTGGCAATGCGGCA 728120 29 100.0 32 ............................. ATGAATGGACGGCTCGCAGAGACGGATAACGC 728059 29 100.0 32 ............................. ATCCGGCAGGCGCAGTACCGGGCGAAGAGGGC 727998 29 100.0 32 ............................. ACCTCATCGCCGCCAACGCCGCGGACCTGATC 727937 29 100.0 32 ............................. AGAACGCGACGCAGAAACCTGGGGATGGAGGC 727876 29 100.0 32 ............................. GGGGAGTTCTGGGAGGGGTATTTCCATGATTG 727815 29 100.0 32 ............................. AAATGGCAGGCTCAGACTGGGGGCGTGTTGGA 727754 29 100.0 33 ............................. AACGTACAGACCTCTTACGAGAATCTACGACGC 727692 29 100.0 32 ............................. GGAGCCCTGCGTATCACCGGCGGGCCACCGGC 727631 29 79.3 0 ...C.......ATAC.............T | ========== ====== ====== ====== ============================= ================================= ================== 18 29 98.8 32 GTGTTCCCCACGGGTGTGGGGATGAACCG # Left flank : CCCGCATCATTCCCACCATCGAAGAGGTGCTGGCCGCCGGCGGCGTCGAACCTCCCGGCGCGCCGCCCGAGTCGGTGCCGCCAGCCATTCCCAATCCGGAGGGGATCGGCGACCTGAGCCACAGGAGCCAAGGGTGAGCTTCCTGGTCGTGGCGGCGGAGAACGTCCCGCCACGCTTGCGCGGACGCCTGGCGATCTGGTTGCTGGAGGTACGCGCCGGCGTCTACATCGGCGATGTGTCGCGGCGTACCCGGGAAATGATCTGGCAGCAACTGAGCGAAGGTGTCGAGGAGGGCAGCGTGGTGATGGCCTGGGCCAGCGCCAACGAGTCCGGCTACGAGTTCCAGACCCTGGGCGAGAACCGCAGGCGGCCGGTGCTGTTCGATGGGCTGCAACTGGTGGCGTACCAGCCGTGGGCGCGAGAGGCCGAATAGCGGGCGCTGATTCGGTAGATTTCTTGAGGTGATTTTTCTTCTTTAAAAACAAATGGATGTGGGAAGT # Right flank : TCGGCGTCGATGCTCACCCCGGGGATCAGGTTGTGCTCCCCGCGTGCCCTCGCTCGACTCCGCTGTGACCCGGCTGGCATCGGCCGGGCGGTGGAAAAATGCAGCGAACCGCCAAACGATTCCACCCTGCGGAACCGCGAGCCGTTGTGTCGTTGCCGGCGATGCCGTTAGCTGGTGCACGGCCGTATCACTCGACGGCCACAGTCCAAAAAGAGCGGGAACAGCCGCCATGCGAGGTGTCCGAATGCGACCTATCTCTCCAGTCCCCGTATCCCGAAGCATCGGGGCGCTCAACTGCCGCTCCTGAGCCGTTCCATCCGTTATTTCTTCCTCATCCGCATGACGGTCTTTGCCGTCCTGGAGTTCGTCCATGAACGCCTCCGCTCACAGTGCGCCGAAGCCACGCCAGATCCTGGCCGCGGTAGTCGGCAACGCACTCGAATGGTATGACTTCATCGTCTACGGCTTTCTTTCCGGCATCATTGCCCGGCTGTTCTTCC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 738364-737663 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLUM01000012.1 Pseudomonas aeruginosa strain WH-SGI-V-07287 WH_SGI_V_07287_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 738363 29 100.0 32 ............................. CGACCTGACTGCGCCGGCAGAGCGCCCCTATC 738302 29 100.0 33 ............................. TCTGACCTGGGCTTGAGTGGTGCGGCCACCTTC 738240 29 100.0 32 ............................. ACGACTACGACGGTGTTGACGTGGATTTCGTC 738179 29 100.0 32 ............................. TACTGCGTGCGCGGATCGCCGCGCTGTACGCC 738118 29 100.0 32 ............................. TGGCGCAACGGCCTGGAAGCGCTGCTGGTGCC 738057 29 100.0 32 ............................. CGATCATGACCGCGGAATGCTCGGCCCTGGAG 737996 29 100.0 32 ............................. GCGGGCAGGTCGGCCGCATCGAGCACGGCGGA 737935 29 100.0 32 ............................. TATGTTATCCCGTCCAGGGGATCCCGGCCGAG 737874 29 100.0 31 ............................. AACGGCCGCCTCGAATTCGACGCCGGCTGGA 737814 29 100.0 32 ............................. GCCATGCAGATGGCCATGGAGTGGGGGAACCC 737753 29 93.1 32 ..............C...........G.. CAGGAGAACGCCTCATGGTCGCTCGCAGTTTC 737692 29 89.7 0 ...........A.......CA........ | C [737683] ========== ====== ====== ====== ============================= ================================= ================== 12 29 98.6 32 GTGTTCCCCACGGGTGTGGGGATGAACCG # Left flank : CATAGGCGTCGTTGTACAGCGCGATGAATTCCGCGCCCCAGAACAGCACGATCTGCGCCTTCGCCGGCAACAGCATGGCCAGCGCCGCCCGCAGGCTCGCCGGCCAGCCGTCCGGCGGACCCAGGGGCGAGGCGGCCGCGTCGAGCCTGCCCAGCAACTCGCCGACCGCGCCTCCGTGAGCCAGGAAGCGCGGGGCTTGGCGGTCGCTGTTCGGGGCTGGTTCGATCAGGAAAGGCTGGGTCATGTCGTCGGCGTCGTGTCCGTTGCTGGATGAAAAGGGCAGGGGCGGAACCCTTGACCATAGGAGGGCCACGGCTGCGCTTGCGTTCAATCCGCTTGGGGGACTGCGTGGCTCCGACGCGGGACAGGCTTCGGCTGGTCGCCAGGGTTGCACTGGATCGGACCGCGGTGTGGCGCGGCTTTCATTGCCGACGGCGGCTTGGCTCGGTGGCATTTGGGCCGCTGTTTTTCTTTTTTGAAAACAATGGGGTACGGTAAGG # Right flank : TTTCCGAACGCAGGGCTTTATATTCACGACGAGCTGGCCGCCGCCCAGGTGTTCGGCTGACCCTTTCAACTGCCTACATAGGCGTCGTACAGGCGCGGCACCATGGGCTGGGGCGCTGTTCCGCGTGCCAGCGTTCATGGACCGCCGGCATGGCCAGCCAGTGGCGGGCGCGGCCGATGCCGGCGCGCTCGAGACGAACGGCAAGGCCCGGCATAATTGTTAACAGGGTCCATACCTTCCTGCGACCCATCGCTTGCCAGGGGGAGGTGGGCAGGCCTACCTGTCGCTGAGCGCTACTTGACGAGAATCCTGCCTACAGGAGTGCGGGAGGTCTTCCCCCTTCATGTCCGGTCGAGGCCCAGGATGACTGCCTTGGGTTGGCGGTGGTGGCTATATAGTGGCGTCTTCTTTTTCCCTGTAGGATTGCATCGTGGCAGCGAATCGACCGATGCGGGTCAAGTCCAGGACCCGGCGGTGATCGCTGGATAGCCTTAGCCCAG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 110295-109726 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLUM01000061.1 Pseudomonas aeruginosa strain WH-SGI-V-07287 WH_SGI_V_07287_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 110294 28 100.0 32 ............................ AGATCGAACACCCCGTAACCGACGCCGGTAAT 110234 28 100.0 32 ............................ ATCGGCGGCAAGACGCCGGCAGAGGTGGACGC 110174 28 100.0 32 ............................ AGGTCGCGCTCGTCACGATGCCGAGCCACCAT 110114 28 100.0 32 ............................ CGACCGAGGGGAGAGTCACCAGTCCGGAAAAT 110054 28 100.0 33 ............................ TGTTGCTTCTTATCGATGGTGAGCTTGTTCGCT 109993 28 100.0 32 ............................ ACGGCGCCATCGCGCCGTTCAAGCGCAACCTG 109933 28 100.0 32 ............................ GTGCGGCGTTCATGCTGAATCACTCGGAATCA 109873 28 100.0 32 ............................ GGTGGCTGCACGGTGGTGACCGGGATGATGCT 109813 28 100.0 32 ............................ TCTCCACCCCAGCTATTGCCGGGGAGGGCATG 109753 28 96.4 0 ...........C................ | ========== ====== ====== ====== ============================ ================================= ================== 10 28 99.6 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CCGCTTCCCGCACAACGCCACGCTGTACCTCGACACTCAGGCACCGCCCGGCCAGTTGTTCGAGAGCGCGAAAGCGCGCCTGAAGTCGGCGATCAACGTCCTCGCCATGACCTGCCTGCTCGACGAGAACGAAGAACCCGGCGACACCCTCGCCTACATCAACGGCGCCTTGCTGAAGCTGGTCAGCGACGCCCTCTCCGAGATCGACGCGGCCCACCCACGCCAGTAGCGCCCGTCCCAGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGAGAGGTGATCCCTTCGAGGCCCATTCGCGCGCAAACGGCGAGGTCCGCCGCCCGTCCCGATCATCGCGAAATGGCCTCCAATTGCCCGAAGCTTCCGACCCTTTTTGGGGACGGTTTCTTACGCCCTTGAAAATCAAAGACTTACAAAGCCTCGTAAAAAGAGGGTTTCAAACTGGGAAAACCCTGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGCGGCTA # Right flank : TCGCGAGCGATATAAATCCATAGGGCACCGGCCTGCGGAGGTCTGGCAGGCACGAAGTCATGCTTGGCCTCCAGACGGTAGGGCGGCGAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGTAGGGGGACGAGCGGCAGGAGGCCGCGAGAGCCGCCCCGGTCCATGAAGGACCGTGGCGGCGGGCCCCCGGAGCGACGATGTAGCGAGGGAACCCCAGTCGCGTAGCGGCTGGGGCCGGATGCAGGGGCAAGCGCTTTGGTTACTTTCTCGCGACTGAGAAAGTGACTCGCCTGGGAAGGCGAAACAAGAGGTCGAGGCAGGCACGACAAGCAGCTAGACCGCCCAGCCAGAAGCCCGCTCAAGCTTTAAGCGACATCCTTCCCCAGCTGTTAACTGCCGTGTAGGCAGCTAAGAAAACGGTCCCTTGCTCGCGCCGACCAGACGTCCCGTTCACTGCCGCATAGGCAGCCTGACTTCCCTCGGACTCGCAAATG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 89543-90291 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLUM01000045.1 Pseudomonas aeruginosa strain WH-SGI-V-07287 WH_SGI_V_07287_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 89543 28 100.0 32 ............................ CCATGGCTGGGCCGATCTCCCATCGCCCGCAA 89603 28 100.0 32 ............................ ATGCCCGGCACAGCGAAGCCATGAGGGAGAAC 89663 28 100.0 32 ............................ TCCTTCAGGTAACGGCGGCGACCGCCTATCTG 89723 28 100.0 32 ............................ TGCGCACCGGTCGCGGCGGACGCTGCGCTACG 89783 28 100.0 32 ............................ TGCTGCCTCGGATGCGTCGGGAGTTCGGCCCT 89843 28 100.0 32 ............................ AGCGGGCTGCCAACGGCCGACCTGCTGCTGCG 89903 28 100.0 32 ............................ CAGGCGTTCTCGGTCGGGTTCGGTCTTGTCGC 89963 28 100.0 32 ............................ TGGAACACCAGCCGGACCCGGACGACCCGACC 90023 28 100.0 32 ............................ TCTGAGCGGATACGCTCGATCAGCAACGGTTC 90083 28 100.0 32 ............................ GAAGCATGTTGCTCAGGTAAAGACGCATATGG 90143 28 96.4 32 ..C......................... TCGAGGCCGATCTCCCGTATCCAGAATCCACC 90203 28 100.0 33 ............................ ATCGACAACGTGATGGGTATCGCCCAGCAGCGT 90264 28 92.9 0 ..G..................G...... | ========== ====== ====== ====== ============================ ================================= ================== 13 28 99.2 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : CAACCGCTTTCCGCGCAACGCCACGCTGTACCTCGACACCCAGGCGCCGCCCGGCCAGTTGTTCGAGAGTGCGAAAGCGCGCCTGAAGTCGGCGATCAACGTCCTTGCCCTGACCTGCCTGCTCGACGAGAACGAAGAGCCCGGCGACACCCTCGCCTACATCAACGGCGCCTTGCTGAAGCTGGTCAGCGATGCCCTCTCCGAGATCGAAGCGGCACACCCACGCCAGTAGCGCCGTCCCAGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGATATGTGATCCATACGAGTCCATTCGCGCGCGAACGGCGAGGTTTATCGCCCGTATCGGCCGTCTTGAAATGGCCTCCAAGGCCCGAAGCTTCCGACCCTTTTTTCGGACCGTTTCTTACGCCCTTGAAAATCAATGAGTTGCAAAGACTTGAAAAAAGAGGGTTTCAGACCGGGAAAACCCTGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCTGGGCTA # Right flank : AAACGGAGGCCTCTCGCCAAGACGATGAGAAGCCCAAGAAAAACGGCGCTTCCCTTGCTCGAGGAAGCGCCGTTTTACTTAACTGACGGGCATTAGGCGAAAGCCGGCCTTCTGGTTTGCCTGTCGTCCGTGCGTCAGCGCACCACGTGCAGGAAGTGCATGTGCCGCTCGTACTGGTCGAGGATGTCGCCGATCACGCCGTCGCGGCTCCAGCCCATGATGTCGTAATCCTGGCCGCCCTCCTGCAGGTGGACCTCGGCGCGGAAGTACTTGCGCGCCTCGCTGCTGTCCTCGGTATCGCGCATCACGAAGCTCGGCGTGGTGAAGGCGCGCGGACGGACCTCGTAGATGAAGTCGACCTCGCCACCGTGGCTGACTTCCAGGCGCACCCGGCCGTCCTCGCCATCCTGCACCTGGACTTCGTAGCCCTGCTTGCGCAGTTCGCTGGCGACGTCTTCGCAGGCCGGTCGCGCCACTTCGGAAATGAAGCGGTTGACGTG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //