Array 1 37840-37276 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFPH010000003.1 Lactobacillus sp. M0390 NODE_6_length_217212_cov_277.185104, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 37839 36 100.0 30 .................................... AAATCAAGGAATACTATCAAACGGAACGAG 37773 36 100.0 30 .................................... TATTAGTATCGTTAACAGTGCCTAGCAATT 37707 36 100.0 30 .................................... CCGTTTACTTTTACGAATGATATGGCAATT 37641 36 100.0 30 .................................... TACCCTAATGAAAGTGGATATACAGGGAAA 37575 36 100.0 30 .................................... CCTGACATTACAAAGGATAATTTTCTTAGA 37509 36 100.0 30 .................................... CTAAATACTTAACGTTATCTTGTAAGCCTA 37443 36 100.0 30 .................................... GCCAAGCTGTCTAAGCTTGAACAAGAGTTA 37377 36 97.2 30 ........C........................... TAGTCAACCTTATGATGAATCTGATATAAA 37311 36 94.4 0 ........C..........................A | ========== ====== ====== ====== ==================================== ============================== ================== 9 36 99.1 30 GTTTTAGATGGTTGTTAAATCAATGATGATTAGAAC # Left flank : AGTGAAGACATATCGAAAAGATATTTAACCCTTATAATTAACAGCTATGCGAAGACTATAGACGAAGAAAACAGAAATAAAGTCTTTAAAGCTTATTACAACCTAGAGACTGTATTGCATGATTCACTTTTACTAGAAGATCTTCCGATAGACATTGACTTTAACGAAGATTTGAAAAAGCTGTTAAAATTGGTGGAAATTCATTTTGATAGGAGTGTATTAACCAATCCATATGCTATAATAGAAACTGTTCTAAAAATTCATCAGAATTATGATTTGGGGACAATTCCTGTATTTTGTAATGTAGCGCATTATTTTGATGAGCAGGAATGGCAAGAGGTAGCTAATCTTGCTATGGAAGTCAATTCAAGTGTGATTTTTCTTGAATTTATTAATCCTCAAAATTTGAAAATATCTAAAAACATTACTTGTTATTATATAGATCAAGATCTAGTCGATTGGTACTAACCGCTATATTAAAATTTGATTATAAAAAATCG # Right flank : CGAAAAACTTCTTTCTCCAATTAATTGAATTAATCCATGACATAGTACAATTACATAAAGAAAAAACGCGCCAGATAGAGCGCGCTTTTCTTTTTTCCAAATAAAGTCTAAGTATGACTAGTTTTGGTCCAAGAATTATTGCCGATTAATTCTCTACCAATTGATCGGTAGGGGATAAATGATAATAACCAGCGGTAAACACCAAAACTAAAAATGATTCTTAAAATCTCAATTGGGTTGTTAACGGTACTAAAACCAGTTTCAAACCACTGTTTTTTAATCATTAAACCATTAATAGTGTATTCAGTTAATAACAGAGTCAGGATAATCGCTAAGCTTGCCCCCAAATTGAATCTGGCATAAGCAATCAACGTTATAACAGACACGATTGATGATGGAACCACGATAACTGATATATAAGGCACTAATAAAAATAATAGGATAAAGGCCTTAACACCAGCTGACATCCGGTCAGATTTGATAATTTTTCCACCATAGAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATGGTTGTTAAATCAATGATGATTAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTTAGATGATTGTTAGATCAATGATGATTAGAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.10,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 134250-134680 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFPH010000001.1 Lactobacillus sp. M0390 NODE_1_length_874009_cov_219.526420, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 134250 36 100.0 30 .................................... TTAACACCTAGATTACAGACAACCAAGCTG 134316 36 100.0 30 .................................... AAAATCGTGAGGACAAACACGGTGGCAATA 134382 36 100.0 30 .................................... ATGCTATTGGCGAACCCGGTATTTACTTTA 134448 36 100.0 30 .................................... GCAACCGCAGAGAATGTTAAGCGATTTTTC 134514 36 100.0 30 .................................... CTCGCGTAATATAGACATCTTTTGCTGAAA 134580 36 100.0 30 .................................... AAACAATATACTTGGCTTTAGAGATAGAAT 134646 35 77.8 0 ....................-..AA.AC..G...CT | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 96.8 30 GTTTTAGATGGTTGTTAAATCAATGATGGTTAGAAC # Left flank : CAATGGGTGAGTTTTATGCTGGTCAAGTCGTGGCAGAGTATCAAAATGCGCTTGATGTTGATGGTGACAAGGAAATGATTGCCCGTCGGCAGAAAGTCAGTGTTTCAGAATATGAGCAAATTTTTACTCAGGCACTTGAACTTCCTCAAGATAACCTTGAATTAGCGAGCGATGAAGAAACCGGTTATTGGTACTTTGCTGGAACTAAAGATCACGTTCGTCAATACAAGCAAAAATAAATTTAGACCCTAAAGTTGGGTCTTTTTTTATGCACATTTTTATTAAAACTGAAACCAAAACATTAAGCTAATTAACCCTTGTGCTATAATTTAGGTGATTTAATTTTAGTCTAAAAGTTTTTGAACTAAAAATGTAGCTAGTTTTTAATTCAAAAGCGTGTTTTTCGCAATTACGAGGTGGTTGAGTTGACGAAAAATACTTTGATAATTGCCGGAACTATTTTTGATGAGACAGCATTAAAAAATGATGATAAAAAATCG # Right flank : TAATACATAATTAAAAGAAGGCTGAGAATAGAGGCACTAAAAATGATTAGTGGAAAGTAATATAGCCAGCAGGAAGAATAAAAAAATAATCGAAGAGAAGCCTTTAAACGAGCAGGCATCCTTACTGATAAAGAATTCTATAGTCTAACGACAAGTGAGCGACTTGAATATGTCAAAAAACAAAATGAGTTACATATGCCAGTAACTGTAGAGCGAGACACACCTTATGATACTAACTTCCAAGTGAAAAAATCAGGTAAAGAGAAAAAAGTAGATGTTGACGCTAAGATTAGACATGCACAAACTAAGGGCTTTATTATGAACGTTTTAGGTTTATTAGCCCTAATTGATATAATCCATAATTGGTGGGGACCTTCAAAATAGTTTCATTTTCTAAGAACAAGTGGTTATTACCTAGCCTAGGAGAAGACAAAAGTTACTAAACACTTTTGAATTTACTAAGTGTATCAGCTTTTGTTAGGATTAATTTATAATTGCTT # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATGGTTGTTAAATCAATGATGGTTAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGATGATTGTTAGATCAATGATGATTAGAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //