Array 1 970551-972164 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP014657.1 Salmonella enterica subsp. enterica serovar Anatum str. USDA-ARS-USMARC-1736 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 970551 29 100.0 32 ............................. AACTGAAACCAGGCCAGGTGATATTTATCAAA 970612 29 100.0 32 ............................. CCGAGTGTGAGCAGGCTATTTATGATGAGCGC 970673 29 100.0 32 ............................. GGCTCCGAATGTGAAGAATCCGACGCTATTGA 970734 29 100.0 32 ............................. GCCAGCGCGCCTGCGGCAGCACCGGCAGCAAT 970795 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 970856 29 100.0 32 ............................. GTAATCAATCTCATATAGAGCGGGGGGGGGAT 970917 29 100.0 32 ............................. TTGATTGATCGTTATCAATGGGGAAAGAGATG 970978 29 100.0 32 ............................. TAATACCCGATCGAGCGCACTGTGTCGCCGGA 971039 29 100.0 32 ............................. CGCGAGCAATCCCATCTGACGTTCCGGAGACA 971100 29 100.0 32 ............................. GTCATCGTTATACACGTGACGGTTTTAATAGT 971161 29 100.0 32 ............................. AAAATGAACAGCCACACATCCGCCAATAAAAA 971222 29 100.0 32 ............................. GCTGTCGGTCGCAGTGTGGATATTGCGATCAA 971283 29 100.0 32 ............................. GGGCTGAACGGCGATCTGATTACGTGGAGTAA 971344 29 100.0 32 ............................. TACGCCAGCTATAAGGGGTACACGAACAGCTT 971405 29 100.0 32 ............................. GCCCGAGAAAAGTTGCTTCTCTTTGCTGCTGC 971466 29 100.0 32 ............................. CATACCCTGTAGTTTCAATTTCCGCAGGTGGG 971527 29 100.0 32 ............................. AGCGCGGAATGATTTTTAACGCTGAGATGGTG 971588 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 971649 29 100.0 32 ............................. CAGGTCACTAAAATTTGTAGGGTTATCCACAG 971710 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 971771 29 100.0 32 ............................. TGTCTTAACTCCATTGCTGAGTCGATTGTGAA 971832 29 100.0 32 ............................. CACACAGAACGCCAGTTATAATCATCGGTGCT 971893 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 971954 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 972015 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 972076 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 972137 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 988479-988996 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP014657.1 Salmonella enterica subsp. enterica serovar Anatum str. USDA-ARS-USMARC-1736 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 988479 29 100.0 32 ............................. GACCACGACTGGAGTGATCAGATCGGTGTGGT 988540 29 100.0 32 ............................. CGAGCGGTACAACTCCAGCATTAATCCCCACC 988601 29 100.0 32 ............................. CGGCGAATCAGTACGAGGGACGGCTGGCGCTG 988662 29 100.0 32 ............................. CGGTTCCGTCATTGCAGATCCCCCACTTCATC 988723 29 100.0 32 ............................. GACGCGTCTTTTCCACAGCAGGACTCTAAATC 988784 29 96.6 32 .............C............... TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 988845 29 96.6 32 .............C............... GAGCGGCTAAACGATGAATTAACCAGGGAGCG 988906 29 96.6 32 .............C............... TCGCACAACGCCTGGATATCCGCCCATCGGCC 988967 29 93.1 0 ............TC............... | A [988994] ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.1 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGAAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //