Array 1 40023-39820 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGHLH010000002.1 Escherichia coli strain NEH17 contig00002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 40022 28 100.0 33 ............................ AACCTACCGTCTTGGCTAGCGGTTGCAGCGAAC 39961 28 100.0 32 ............................ GGAACAATCTTGCAAAGGCTGTGAAAGTTGGC 39901 28 100.0 28 ............................ TTCACAGGTAACATACTCCACCCACCAT 39845 26 85.7 0 ................A...A.-.-... | ========== ====== ====== ====== ============================ ================================= ================== 4 28 96.4 31 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GATAAATTCATCGTCGAGTTGCAGGTTCAGCTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCAGGTAGGTTGGTCAAGTCCGTAATCTCGAAAGAGGTTGCGGACTTTTTATTTATGGGGTGGAGGTTCAGACCCTTTTTTTAATGATGATGGTAAGTTGTTGATAATTAGTGCTGCGGGAAGGTAAGGATAAAAAAGGGTGCTGCAGGAGAATGGGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : TGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAAACCTCATGGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTTAATGATAATTATTGTTTGCTCATACTGTAAACAACTTGTGCAGTATATCTACATCGAGACAAGTTATGGACTTATACTTCCAAAGTACTTCATACATATCACAAAATAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGAT # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 90067-89123 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGHLH010000003.1 Escherichia coli strain NEH17 contig00003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 90066 29 100.0 32 ............................. ACGGCTTCATGTTCTTGGTGATGGGGTTCACC 90005 29 100.0 32 ............................. AAAAAATGCGACGACCGCAGCCATTCCGATCT 89944 29 100.0 32 ............................. AGATCAACACGGTAGATATTTCCGTGATTGGG 89883 29 100.0 32 ............................. GCGTTGGAGTTCGCAGCGGCATTATTGAGCCT 89822 29 100.0 32 ............................. AGTCTTTAATCAAAATGGATTTTTATAATGAA 89761 29 100.0 32 ............................. GGTTACGCCTGCACAGAGTACAATGCGTGGGG 89700 29 100.0 32 ............................. CGGTGGCAGTGATGAGGCGTTCCCAATTAATG 89639 29 100.0 32 ............................. CGCACTCAAAATAGTAAATTAATTTATGAATT 89578 29 100.0 32 ............................. CATCCGGCGCTGAACATCGCCACCTGCCTAAC 89517 29 100.0 32 ............................. CGGTGATGCGCGGTATCGATCAGCATCCGGCT 89456 29 100.0 32 ............................. GGCACGGAATTGTTATGCTGTTCCCCTGACCG 89395 29 100.0 32 ............................. TACAGTTTCCATAAATTCACCTCGTTTATATA 89334 29 100.0 32 ............................. ATCGGACGATGGCGATCGCAATCGCGCGGGAA 89273 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 89212 29 93.1 32 ............T.....A.......... GACGCACTGGATGCGATGATGGATATCACTTA 89151 28 75.9 0 ..A........C..T....T-.G.....C | C [89126] ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.1 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TATGGCGACGCTGGGGCGTCTTATGAGCCTGCTGTCACCCTTTGACGTGGTGATATGGATGACGGATGGCTGGCCGCTGTATGAATCCCGCCTGAAGGGAAAGCTGCACGTAATCAGCAAGCGATATACGCAGCGAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : AGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAATTAAGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTTTCGGTGTCACTCATCCGCTT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3630-2626 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGHLH010000020.1 Escherichia coli strain NEH17 contig00020, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3629 29 100.0 32 ............................. CGCGAGCGCGTTAGCTGACGACATGATCCAAA 3568 29 100.0 32 ............................. CAACATATTTAAACGATTTAAGCCAGGCATAT 3507 29 100.0 32 ............................. TTCTGGGTAACTGGGCGTGGATATCCGGCGAT 3446 29 100.0 32 ............................. TTCTGGGTAACTGGGCGTGGATATCCGGCGAT 3385 29 100.0 32 ............................. AACTTTTTAACAGTGTGGCGCAGGCGATGGGC 3324 29 100.0 32 ............................. CAGCCCCTGAGTCAGTGGATGATTGCGAATGA 3263 29 100.0 32 ............................. AACTTTTTAACAGTGTGGCGCAGGCGATGGGC 3202 29 100.0 32 ............................. GTGCGGCAGATATTGACCGCGAAGCGGTTATC 3141 29 100.0 32 ............................. CATATCGCGATCGCGCCGGGTACGAAAATCAC 3080 29 100.0 32 ............................. AAACACCTGAACGATGTCATCAACGACGTAAA 3019 29 100.0 32 ............................. CTATGAAGGCGTAGTGGATTCAGTCATAAAAA 2958 29 100.0 32 ............................. AGGACGTAAACCCAATGAAAAACATGATTGCG 2897 29 100.0 32 ............................. CGCGGCAATGGATGCGCAGGTACGCGAATTAA 2836 29 100.0 32 ............................. GTGTTTGAGGTGCCGCAGCCAATCTGTACGTC 2775 29 96.6 32 ..............A.............. ATCTCGCTTCTGATGGTGCACCTCATCAATAG 2714 29 96.6 32 ..............A.............. AGATTTTGGGACAACGTATTCAGTCTGGACGA 2653 28 86.2 0 ............T.A..........-..A | ========== ====== ====== ====== ============================= ================================ ================== 17 29 98.8 32 GAGTTCCCCGCGCCTGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACCCATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTCGATTTTAGTTTGTATAGAGTTATTTTAATTATTTACTTTTTCAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : TTTAGGTATGTTCAGGCCGGGCAGTTTTCCGCCCGGCCTACCTCATTCACACATTCGACCAGCTCTGGATCGAATCCGCATTCCCCAATTCCCCATGCATCACTTCATACGATTTTTTCAGAATCACATCAGTGTGTTTGGTTAAATCTTTGAAAATGCCTTTATTCATCGCGTCGTAGCGTTTGGCATTGCTCTCAACAGGCATAAAGATATCTTTCACGCGAACCATTTTATCGACAGCCGTTGCGTAATCCGGGTATAGCCCCAGACCTACCGCTGTATTAATCGCTGCCCCCAGGCTTGCACAACCGTTAATGGCGTTACGTCGTGCCGGAAGGTTGAACACGTCGGCAAAAATCTGCATAAACAGATCGCTGTTCGAACCGCCGCCAGTAATGATCACATGCTTCGCAAAGTGATTCATTTCATTACACATATTGTCGTAATTGTTCTTCAGCGTCAGCGCCACGCTTTCCAGTATCGAACGATATATCCATGCG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCTGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCTGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //