Array 1 4009653-4011206 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP048604.1 Escherichia coli strain PapRG-06-3 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4009653 29 100.0 32 ............................. GGATTTTCTTTGGTGGGGAATGCCCGCCGTGT 4009714 29 100.0 32 ............................. TTGATTACCTCGCTGTTGCTGCGCTACTGGTG 4009775 29 100.0 32 ............................. GCGTTTCCATGCCGTTGATAAACATCCCGCCC 4009836 29 100.0 32 ............................. GGTTGCCATCGCTGACGCAACGTCATTAAGGC 4009897 29 100.0 32 ............................. GGAATAATTACCGCGCTGATTAAATTAATTAA 4009958 29 100.0 32 ............................. GCGGCAGCGCCCGCCGGGTACGACGGCAGCAC 4010019 29 100.0 32 ............................. CGCTTTTGCTCAGTAGTGAGTGTGATTTCATC 4010080 29 100.0 32 ............................. CAGGTACAGCCGTTTCGGTGTTTTGTTTTTGT 4010141 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 4010202 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 4010263 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 4010324 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 4010385 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 4010446 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 4010507 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 4010568 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 4010629 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 4010690 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 4010751 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 4010812 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 4010873 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 4010934 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 4010995 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 4011056 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 4011117 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 4011178 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTATCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTGCTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 4036906-4039375 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP048604.1 Escherichia coli strain PapRG-06-3 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4036906 29 100.0 32 ............................. CTAATTGCACAATAAATACCCATAGTTACCCC 4036967 29 100.0 32 ............................. TCCGACCGGCTGTGTTCTTACTGGGATATATG 4037028 29 100.0 32 ............................. CCACCCTCAGATCGCCCTTGTACATCATGTAC 4037089 29 100.0 32 ............................. CGCACCGGCTGAGCCAGCAACAACAGAAACCG 4037150 29 100.0 32 ............................. ATCCGTACCGGCTGCGCCGGGCTTCGGCGGCT 4037211 29 100.0 32 ............................. GGCGTGAATGAGGAATTGAACTTTGCATTCAA 4037272 29 100.0 32 ............................. AAAGAGTTGGGACTGATCAGTTGCCAGCAGCC 4037333 29 96.6 32 ............................T AATGCAGTACGCGCCGGATCCGGTGTTACGTC 4037394 29 100.0 32 ............................. CATCCGTTCAAATTCCATCAGATAGCAAACCA 4037455 29 100.0 32 ............................. TATTGTTGACTGCTACGAATACGCAGACGAGC 4037516 29 100.0 32 ............................. GCGACGATACCTGTGCGAGCTGAATAAAATAA 4037577 29 100.0 32 ............................. CTGCGCGACCAACGGGAACAGGGCAAATGTGA 4037638 29 100.0 32 ............................. TCGCACTCAATTTCGTCAGTGAACGGGAACCC 4037699 29 100.0 32 ............................. ACGCCGAAAACGGTTGGTGCGTATAGCGATAT 4037760 29 100.0 32 ............................. CTGTTTCTGGTTTTACCTCCGGCAGCATTTCA 4037821 29 100.0 32 ............................. AGAGAGTGGTTTGAAGCCGCTCCCAGGGACGA 4037882 29 100.0 32 ............................. CGGAACAACAGGTGCAACTCAGGGCACAGGAA 4037943 29 100.0 32 ............................. GGTTATTTATAATCCATTGTTTCCATTACCAG 4038004 29 100.0 32 ............................. CTGGTCGCGGCAGGGCGTTCAATTTTAGGGGA 4038065 29 100.0 32 ............................. TAATCATTTGGGGCCCCATTAATTAAAAGGAT 4038126 29 100.0 32 ............................. GCGCTCACATTTAGCGCCAGAGCCAGGCGGCG 4038187 29 100.0 32 ............................. AATTCGGAATCACATTAAAAGGGAACCCGATA 4038248 29 100.0 33 ............................. GTTTGAAGGGCGTTTGGAGGAACCCGCGCGTGC 4038310 29 100.0 32 ............................. CCTACGCCATGTGGATTAGTCCGGCGTTTCAT 4038371 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 4038432 29 100.0 32 ............................. GTTTCTCATATTTCGCGTCAATCTCCACCAGG 4038493 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 4038554 29 100.0 32 ............................. ATCGCTGGTCTGCGAAAACGCGCGCCCGAAGA 4038615 29 100.0 32 ............................. ACGAGGTACAGTGGTGCAAAAACAAATTATAG 4038676 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 4038737 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 4038798 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 4038859 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 4038920 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 4038981 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 4039042 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 4039103 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 4039164 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 4039225 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 4039286 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 4039347 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 41 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //