Array 1 36302-35678 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_VAHY01000077.1 Mannheimia haemolytica strain UGA-A5-104-3 NODE_17_length_51431_cov_180.6, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                 	Spacer_Sequence                    	Insertion/Deletion
==========	======	======	======	================================	===================================	==================
     36301	    32	 100.0	    35	................................	ATTTCTCAGGGTAAAATCCAAGTAAATGTACCGAA	
     36234	    32	 100.0	    33	................................	ATTTTTAGGTTATCCCCGAGCAAACATTGCTTG  	
     36169	    32	 100.0	    33	................................	CCTCTAAAATCATAACTTTCGTTAAAGCATGCG  	
     36104	    32	 100.0	    34	................................	CTCATCATCGCTCTTGCCAGCTCTAAATGGACTT 	
     36038	    32	 100.0	    33	................................	TGCACCACAGAAACAAGCAGGATCAATCACAAT  	
     35973	    32	 100.0	    34	................................	AGCCCTTTCTCTAATTGTCCTGAAACGAGGGCAA 	
     35907	    32	 100.0	    34	................................	CAAATGTGGTTATGGCTTTGATGCGGTAGAGTGT 	
     35841	    32	 100.0	    33	................................	CAGGTATTTAAAATCCTGCGGGCAAGGATTTTT  	
     35776	    32	 100.0	    35	................................	CTCGTCTTGAATTGGAAAATCAAGGGCGACAATAG	
     35709	    32	  96.9	     0	.......................T........	|                                  	
==========	======	======	======	================================	===================================	==================
        10	    32	  99.7	    34	GCAGCCACCTACGCGTGGCTGTGAATTGAAAC	                                   	       

# Left flank :   ATCGGGAAGAAATGCTGGCTTTAATTTTAGATCGCAGTGATGATAATGCTCCGAATCAGGCGGCGCGTTTTACTGAGCATGTTCGCGCATTAAAAGAGCAAACATTGAATAAGGAAGAAAGAAATGATGTTTTGGAAACGTTTACTGTTGATTCGCCAATTCCGTATTCTATTGAATTATTGTTAGCTCGTTTAGATAAAGATAATTCTGAGATGGTACCTAAAGAGGGAGGTTCAGGAACAAAGCAAGGTCCTTGGTATAGTAAGTTGTCTAGGTTTATGGGAAGGATGAAAGCCAAAATAGATGACAGACGTTGCGGTTTTATGTTCCAACCGCCAGTAGAGTGCAACAGCTATGGGTGGCTGGAAAATATGTTGTCAAAACTGTTTTCTGCTTCTGAGAGCGAAAAAGGGATAAAAATTATTGATTTTTCGGAAGTCCCGTCGGATGTTTTACCGATTGTTACTTTGCAAATAAAAATACCAATGCCAAAACATTAC
# Right flank :  GGTGTACCCACAAATCCTATGTTTTCGCCATTGGCTGCTACCTTCGCATCAATATATATTGAAATATCAATAGCAAATTTGTATGTTGTTAATTAGACTGATTGCATCTGCTATGTATCATAGTAATGACGAAAATATTCTATTTTGCAAAAAATAATCAGAAATTACCCGCTTGTTCGAACTGAGTTTTTGTTTTCTAAGATGTGAAATGATACACTTTAGATAGTTTTAAAATATAGAGACAGTAAGATGAGTAGTACGGAATTATTAGTGAATGTTACCCCAAGCGAAACAAGGGTAGCGTTGGTAGAAAACGGAATATTGAAAGAATTACATATTGAGCGGGAAGCTAAACGCGGGATTGTTGGTAATATTTATAAGGGAAGGGTGACAAGGGTATTACCAGGTATGCAATCTGCTTTTGTGGATATCGGCTTGGAGAAGGCTGCTTTTTTGCACGCTTCTGACATCGTTTCGCATACGGAATGTGTTGATGAAAA

# Questionable array : NO	 Score: 9.25
# 	Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GCAGCCACCTACGCGTGGCTGTGAATTGAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         R Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     R [6,8] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GCAGCCACCTCCGCGTGGCTGTGAGTTGAAAC with 94% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-2.00,-1.40] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [1-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [58.3-65.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.37,9.78   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
//