Array 1 60561-59373 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLZH01000022.1 Escherichia coli strain MOD1-EC6345 MOD1-EC6345_22_length_88826_cov_36.486, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 60560 29 100.0 32 ............................. GCCGGGTTAAGAAGGTGTATGGATGGCCCGGA 60499 29 100.0 32 ............................. GGTTACGCCTGCACAGAGTACAATGCGTGGGG 60438 29 100.0 32 ............................. CGGTGATGCGCGGTATCGATCAGCATCCGGCT 60377 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 60316 29 100.0 32 ............................. TACTGGAAAAAGCTGGCGACGGTGAGCGCAGC 60255 29 100.0 32 ............................. GGCACGGAATTGTTATGCTGTTCCCCTGACCG 60194 29 100.0 32 ............................. ATCCGCCGCCGGTTAACGCTGGACCAGTTCCG 60133 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 60072 29 100.0 32 ............................. ATGACCATTGGTGAACGCATCCGCTTTCGCCG 60011 29 100.0 32 ............................. CCGACGTGGGGATTTACTGCCACGCATAAAAA 59950 29 100.0 32 ............................. TATAGTTTCCATAAATTCACCTCGTTTATATA 59889 29 100.0 32 ............................. ATCGGACGATGGCGATCGCAATCGCGCGGGAA 59828 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 59767 29 100.0 32 ............................. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 59706 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 59645 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 59584 29 100.0 32 ............................. GGATATAGAGCGGGTACTCGAGCGAAGCGGGG 59523 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 59462 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 59401 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 87285-86096 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLZH01000022.1 Escherichia coli strain MOD1-EC6345 MOD1-EC6345_22_length_88826_cov_36.486, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 87284 29 100.0 32 ............................. CAAGACGACGCTCAACGACATTGCCGACGCCG 87223 29 100.0 32 ............................. GCGTGCCAACGGAATGCACCCTCATTGGTGAT 87162 29 100.0 32 ............................. TCACTGTATACCCAACTATTGGAGATCATGTA 87101 29 100.0 32 ............................. GAATCATGATTCCGGACGACGTGCTGGCGCGA 87040 29 100.0 32 ............................. CCGCTGCGCTGGCGTCAGGCGTACCGGTGGTG 86979 29 100.0 32 ............................. CTATTTTTACAGCGAGTTTTGCAACAAATTTT 86918 29 100.0 32 ............................. AAATTAATTTTGAAACGGGTGTTGATGGTGAG 86857 29 100.0 32 ............................. CGCCGCATTAATATTGATGACCAATATTCATT 86796 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 86735 29 100.0 32 ............................. GCGTCCGTCAAAGAGGAAGCCAAAGCCATGCA 86674 29 100.0 32 ............................. GCGACCACGCAGAGCGGCGACAACCTGACGTT 86613 29 100.0 32 ............................. CTATAGCAGCACTCCACCAGCTCGAGCAGCAG 86552 29 100.0 32 ............................. CAAAAAAATAATATCCGGCAGTCTGTACGGTA 86491 29 100.0 32 ............................. TCGGTTTGCGCGTATTGTTGTTCGGGGTCTAT 86430 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 86368 29 100.0 32 ............................. AGTCGAAATGAGGCGCGTGTTCTGGAGGATAT 86307 29 96.6 32 ............................T GTGTTTGCGGCATTAACGCTCACCAGCATTTC 86246 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 86185 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 86124 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 20 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCATAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //