Array 1 2161501-2165127 **** Predicted by CRISPRDetect 2.4 *** >NC_015737.1 Clostridium sp. SY8519, complete sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2161501 28 100.0 33 ............................ TGAGCGTAAAATTGGTTAAAGAGTCGGATTTGA 2161562 28 100.0 33 ............................ CGCCGCAAGGCTGTCAATCTGCTTCTGCATTGC 2161623 28 100.0 33 ............................ TACTGGCGTTTAGCCATGCGGGTAACAAGGTAA 2161684 28 100.0 33 ............................ TCCGTTCCATGCCATCCCAGCTTGCTTGTGGAC 2161745 28 100.0 33 ............................ TATATATACCGTCCTTAAAAATCGCGTCTGTGG 2161806 28 100.0 33 ............................ CAGCCTGTGCCATTCTAGCGATGCTATTCAGCC 2161867 28 100.0 33 ............................ TAACCAACCCTTCGTCCAGACGCTCTTTAAACC 2161928 28 100.0 33 ............................ TGGAACGTTATCCAATTGTATCGCCTCCTTTCT 2161989 28 100.0 33 ............................ CTCTTCCATAATTTCGAAAATATCATATGGTTC 2162050 28 100.0 33 ............................ TGAGTTACACCGGTATGACAATTCGGGAACTTG 2162111 28 100.0 33 ............................ TTGAAAGAAAGGCAGGAGAAAAAAGATGACTGA 2162172 28 100.0 33 ............................ TCTGCATGAATCCATCGCCCACAGGCTCACCAG 2162233 28 100.0 33 ............................ TGCGCAATCACGTTTTTGTTTTCTTCCGGCAAT 2162294 28 100.0 33 ............................ CGAGCGGACCGCCGAAGGGAGAGAACTTAGTGA 2162355 28 100.0 33 ............................ TTCCACCGTCAAGCACGCTGATCTTTACACGGA 2162416 28 100.0 33 ............................ TGCGCCGCAGCAGCGTGGGACGAAAAGAACGGA 2162477 28 100.0 33 ............................ TCCACCGCCCGCATATGCGTCGCATGGAATTTC 2162538 28 100.0 33 ............................ TCTGATTCGCCCTTCCCCAATAAATTTATGAAG 2162599 28 100.0 33 ............................ CGCATGGAGCCGATCGAAAAAAAGATACAAGAT 2162660 28 100.0 33 ............................ TAATTTTATACGGCCGTTCTGGCCGGGCGGAGA 2162721 28 100.0 33 ............................ CGGTGGTATCACGTGGTTTGCCAGCAAAAAGTT 2162782 28 100.0 33 ............................ CGGCGTTTTGCACAAATTTAGAGCCAGACACCT 2162843 28 100.0 33 ............................ TGCGCAGCGGCAGCCTGGGACGAAAAGAACGGA 2162904 28 100.0 33 ............................ TATGTTTTTTTGTCATCCATTTTTCACCTCCTG 2162965 28 100.0 33 ............................ TACTGGCGTTGAGCCATGCGGGTAACAAGGTAA 2163026 28 100.0 33 ............................ CAGCACCATCATCATCGCGACATCATAGCCGTT 2163087 28 100.0 33 ............................ TCAGCGCAATTTTTGCATGGCTTCCGACAACGG 2163148 28 100.0 33 ............................ TCATTTTTACACCGGAGCAGGTGTACCAGGTAA 2163209 28 100.0 33 ............................ TATCGCATCCATGCCAGCGCTTCCGGTTCTGGC 2163270 28 100.0 33 ............................ CATGTGTACAGCTATGTGTTATGTACAACTGTC 2163331 28 100.0 33 ............................ CGATGTGGATGCCTTCGCGGAAGCGTATCTTGC 2163392 28 100.0 33 ............................ TATTCTTTGCTTTTGACTTTTGACCGTCCAAAA 2163453 28 100.0 33 ............................ CGGCGAACGGCTAAACAGCATCGCTAGAATGGC 2163514 28 100.0 33 ............................ TCAAGTAATCAACGTGATTCTTTCCGTCAATTA 2163575 28 100.0 33 ............................ TCAGGTAATCCACGTGATTCTTTCCATCAATGA 2163636 28 100.0 33 ............................ TGCGCCGCAGCAGCGTGGGACGAAAAGAACGGA 2163697 28 100.0 33 ............................ TGCGCCGCAGCAGCGTGGGACGAAAAGAACGGA 2163758 28 100.0 33 ............................ TGACAGCGACAAGGAAGACCTGAAGCGCGCGAA 2163819 28 100.0 33 ............................ CATGGGATTGGCCATGGAAGGCGGCAGATCAGG 2163880 28 100.0 33 ............................ CGGCGGACGAGGATTGCACGGTGATTGCTTAAT 2163941 28 100.0 33 ............................ CCAGCCATACACAGCGGCAATTTTTCCCGGCAA 2164002 28 100.0 33 ............................ CAACAATCTGTGTGTAAGGACTAATCAACTCAA 2164063 28 100.0 33 ............................ CACGGTTGACGTTCTGGCCAGAAGATCAATGTT 2164124 28 100.0 33 ............................ CAACGGAAGTTGGACAGGATAAATGCATGTGGG 2164185 28 100.0 33 ............................ CGAGCGATCCGCCGAAGGAAGGGGACTCAGCGA 2164246 28 100.0 33 ............................ TGCTCGGAAGGTCATATCCTCTGCTTTGACGAG 2164307 28 100.0 33 ............................ CAGGCGAACACCGGGAAAGGGCTGCAGTGGTTG 2164368 28 100.0 33 ............................ TCACGGCATTTTTTAAAGCCCGTGAAAGCACCA 2164429 28 100.0 33 ............................ CGCCGCGCCGCCGCAATTCTCTGCGCACGGAAG 2164490 28 100.0 33 ............................ TGCTGAGAAAGGCAAACAAAAAAATGTCGTTGG 2164551 28 100.0 33 ............................ CCCTCGCAAGCAGGCCCCACGCAAGTCGGCTCC 2164612 28 100.0 33 ............................ TACGGCGATCCTGACGGCCTGGGCGATCTGCAG 2164673 28 100.0 33 ............................ TCCGACAAGAGGCCGGCCATCAGCAACCATGTA 2164734 28 100.0 33 ............................ TGGATTGACTACGCAAAGCCCTGCGATAATGGG 2164795 28 100.0 33 ............................ TACCATTAGTCAAGATTCCGAACTTTGCTTTTG 2164856 28 100.0 33 ............................ TAATTGCACTATCTTTGATATTTTGTAAATTCA 2164917 28 100.0 33 ............................ CTTTGTCCCCTGTGCCTTTGGCGCATAATTCCC 2164978 28 100.0 33 ............................ TGCCATATTATGATCTGATTCTTTGATCCCAAA 2165039 28 100.0 33 ............................ TCACCCCGGATGTAAAGCACGTCACTTTTTATG 2165100 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 60 28 100.0 33 GTAATTCCCGCGCGAGCGGGGGTGATCC # Left flank : AATATCAAAGAATCGACAGACCGAGTTTCATAGATTGATTAATTCAGAGATGCATATTCCAGATATCGTGCAAAAGCTGACTGGGATTACAGAGGAAATGCTTAAAACAGGAAGCACGTTAGAGGACAGTATACGCGATTTCGATAGATTTATTCAATCTGCAGTTTTGATTGGATATAACGTGTCATTCGATATTAAATTTTTAAACAGAGCATTTGAAAGAATGTCCTTAAATACGATACACAATAAGACATTGGACTTATTGCGTGAAGCGAAAAGGGAAAACTGCTTTCAGGATAATTATAAGTTTGAAACAACTCTTAAAGAGTATGGTATCGATCAGTCAGTTTTTCATAGAGCACTTGAAGATGCAAAACTGGTGCAGTTATTATATAATAAGATGGGATTTGTGAAGAAGCTGTAAGATGGGATCGATTGAAAGTGAATAAAATCCCGTATGTTCAGAAGAAAAAATGGGGGATTTCTGGGATTTTTTTGCT # Right flank : CTCACATCACAGGAATTGGAAATGCTGGTCCTATGTCAAGATTTAGCGCAAGTTAAAATGAGAAATTTATCCTTATCTTAACTTACTAAGAGCAGTTCGTCTGTCTGCTCGTATAGCTTTTCAAAGTCATCCGGTGACATATAATCGCAATGGCTATGAATACGTTTGGTATTATAAAAGGCTTCGATATACTCAAATACCAGGCGATATGCCTGCTGATAATCACGTATTTTAAAACGATTCAGCCATTCCCGTTTGATCAGTGCATGAAATGCTTCAATGCATGCATTATCCCAGGGAAAAGCCTTTTTCGAGTAGCTACGCTGCATTTTTACAGTAGCATCTCGATATGCCTTAGATACATACTGACTTCCTCTGTCACTGTGGATAATCAATGGAAGCTCTGTGTTCCGTTTGGCTTTCGCTTTGTTGATGGTATCAATCACACAGGATACCTCTAATGTCTTGCTAAGTGTCCAGGCAATAATCTTGCGGGAAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAATTCCCGCGCGAGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.70,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 2 2166503-2167262 **** Predicted by CRISPRDetect 2.4 *** >NC_015737.1 Clostridium sp. SY8519, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2166503 28 100.0 33 ............................ CATACCGGTTTGTATGGGATCCGTGCCGCCCGG 2166564 28 100.0 33 ............................ CTTTGTCCTTTGCACTGATCCCGTCAGCGCTAT 2166625 28 100.0 33 ............................ TGATTCCGGCATCAAGGCCACCTCGTCAAAAAA 2166686 28 100.0 33 ............................ CACGGGACGGGCTCCCATATTGATAGTGCCAAC 2166747 28 100.0 33 ............................ TATAAGACGGTGATTTCACTTTAATTCTATGAA 2166808 28 100.0 33 ............................ TCTTAAAATCCGGATCCTGCGCGTACCGGTAAG 2166869 28 100.0 33 ............................ CGCTGGCCGAAGCGTTCATAGATAAACATGAAC 2166930 28 100.0 33 ............................ CAGGAGGCTGACCAGATTGCCGACATTCTTAGC 2166991 28 100.0 33 ............................ TGAAAGAAACTCACCCAAAGCAGTACGATTATA 2167052 28 100.0 33 ............................ CAGGAAAAACTCAACCGGCTAAAATACATATAC 2167113 28 100.0 33 ............................ CGCCCGGATATCATCCGGGCAAGCTTGAAAAGT 2167174 28 100.0 33 ............................ CATAAAGGAGATGCTTGACGATGGCAAAGAAGG 2167235 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 13 28 100.0 33 GTAATTCCCGCGCGAGCGGGGGTGATCC # Left flank : GACCGTGAAACGCCTAAGTATTTCAGCATTCCGGAGACGGAAACCCGGCGGCCCTGTTTTCTGGCAGCTTCCGTCTTTTTAGAAACCCCGAGATAAATAGCTTCTGTTATTTTCCCAGAATGCTGATTGCTTTTTTTAGTACATCAAGTGCATCTTTGGCATCACGGAGTTCACGTTTCAGACGAGCGATTTCTTTCTGCTCATCGGAGGCGTAATTACCGGAACCACGAACAGTAATATCGCCAGACTCCCGGAACTCCCTCAGCCATCTTGTCAGGGTGCTGTAACCTACACCGAGATTTTGGGCACAGCCACGAACACCTAGCTCCTTGTGTTCGAAATAATACTGGACTGCATCCAGTTTGAACTGTTTGTCATGTTGCCTTGCCATCATGAGATCCTCCTCCAGTACGATGTTTCTATTGTATCATGTATTGTCTATTTGGGACTTTCTCATTTTGACTTGCACTATTTATATTCTAGTACCATGCTTATCATTG # Right flank : CTCAGACCCTCTCTCTCTCAATTTCTTGAGATAGGTTGGTCCTATGTCAAGATTTAGCGCAAGTTAAAATGAGAAATTTATCCTTATCTTAACTTACTAAGAGCAGTTCGTCTGTCTGCTCGTATAGCTTTTCAAAGTCATCCGGTGACATATAATCGCAATGGCTATGAATACGTTTGGTATTATAAAAGGCTTCGATATACTCAAATACCAGGCGATATGCCTGCTGATAATCACGTATTTTAAAACGATTCAGCCATTCCCGTTTGATCAGTGCATGAAATGCTTCAATGCATGCATTATCCCAGGGAAAAGCCTTTTTCGAGTAGCTACGCTGCATTTTTACAGTAGCATCTCGATATGCCTTAGATACATACTGACTTCCTCTGTCACTGTGGATAATCAATGGAAGCTCTGTGTTCCGTTTGGCTTTCGCTTTGTTGATGGTATCAATCACACAGGATACCTCTAATGTCTTGCTAAGTGTCCAGGCAATAATC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAATTCCCGCGCGAGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.70,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 3 2168638-2169702 **** Predicted by CRISPRDetect 2.4 *** >NC_015737.1 Clostridium sp. SY8519, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2168638 28 100.0 33 ............................ TACTTCATCATTGCATTTGCAACGTTATCTGAA 2168699 28 100.0 33 ............................ TGTAATTAGATGTGTAGACACTGACGGAATAGC 2168760 28 100.0 33 ............................ CGGCTACAAGTTCAACCAAAATAGCGGTTTCGG 2168821 28 100.0 33 ............................ GCTGAAACACTTAAATGCCCTGTTTGTGGCTCA 2168882 28 100.0 33 ............................ CGTGGTGTAACTTTGCCCTGATATACATTCATA 2168943 28 100.0 33 ............................ CCAGTGGAACGGTCCCGCCGGGTTACAATTAAA 2169004 28 100.0 33 ............................ TGCTGGCGGTGATCCGGACACCGAGAACGGCGC 2169065 28 92.9 33 ..........................TT TGCTGTATGCTTCACTGCCAAACCTGCCAGAGC 2169126 28 100.0 33 ............................ CGGTCATAGCAGTCCGGACAGATGAACGGATGC 2169187 28 100.0 33 ............................ CCGCCACGCTCCGACAGGCTCCGCGCCCATGCC 2169248 28 100.0 33 ............................ TGTGCTGCGCCGCATGATTTCCTTTTTCGGCTT 2169309 28 100.0 33 ............................ TTATATCAGATACCGGTTGTCGCTACGATAGCA 2169370 28 100.0 33 ............................ CCAGTCAGAGCGGAATGCAAGCGAAATAAAAAC 2169431 28 96.4 33 ............T............... CGGGAAAACGTTGATCGTTTCAGGCAGATCGGC 2169492 28 100.0 33 ............................ TCAAAATAAAAAGCCCCTACGTCCTTCAGCGCA 2169553 28 96.4 33 ............T............... CACTTTTAACGGGTTTTGTTAAATCCAATTTCG 2169614 28 96.4 33 ............T............... CATCGCAGTTCCTCCTAAAACGTTTCTTCGCTT 2169675 28 92.9 0 ...........AT............... | ========== ====== ====== ====== ============================ ================================= ================== 18 28 98.6 33 GTAATTCCCGCGCGAGCGGGGGTGATCC # Left flank : AACGATATCCTGACCGTGAAACGCCTAAGTATTTCAGCATTCCGGAGACGGAAACCCGGCGGCCCTGTTTTCTGGCAGCTTCCGTCTTTTTAGAAACCCCGAGATAAATAGCTTCTGTTATTTTCCCAGAATGCTGATTGCTTTTTTTAGTACATCAAGTGCATCTTTGGCATCACGGAGTTCACGTTTCAGACGAGCGATTTCTTTCTGCTCATCGGAGGCGTAATTACCGGAACCACGAACAGTAATATCGCCAGACTCCCGGAACTCCCTCAGCCATCTTGTCAGGGTGCTGTAACCTACACCGAGATTTTGGGCACAGCCACGAACACCTAGCTCCTTGTGTTCGAAATAATACTGGACTGCATCCAGTTTGAACTGTTTGTCATGTTGCCTTGCCATCATGAGATCCTCCTCCAGTACGATGTTTCTATTGTATCATGTATTGTCTATTTGGGACTTTCTCATTTTGACTTGCACTATTTATATTCTAGTACCAG # Right flank : CGCAATATCTGACGATGAATCAGATCCAACAACTTTTGCAATATATTTTTTGTTGTCTGAAGTTGTAACGCCTATTTTTGAGGCTCCGTTTACCACATGGGCACATGTAACAATGTATCCGTCCTTGGATACGACAACACCGGATCCTGCTCCGCCCGATACCTGTGCTCCGAACCATGACTGGCTTGTCTGCAGGTTCTCTGTGGTGATGGCAACAACGCTTGAGCTGATCTTCTTGGCTACCGATGCGGCACTGCCTGTACTGCTGGCCGATGTCGCTATGCTGCCGCTGTCGCTTACCGTATTTATGACAACGTTTCCCGTGCCCTGAGTATAGATGTAGAACGCGCTTCCTGTAGCACCGGCCATGGCACACACAGCAAGGGCGGCTGCCTTTTTCAGGAGACCGCTGCCTTTTGGCTTGCGGATCATCTGGTGGAGGTTTTTTCTGTTTCGTTCGTTTCTGTTTCTGCTTTGCATAATAGGCTTTATCACTTCTT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAATTCCCGCGCGAGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.70,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //