Array 1 349475-350499 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JADFBV010000007.1 Streptococcus uberis strain GCPRG102 Contig_7_261.258, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence                	Insertion/Deletion
==========	======	======	======	====================================	===============================	==================
    349475	    36	 100.0	    30	....................................	TTTGCGTTACGTGTAACAACAACTTTTTTA 	
    349541	    36	 100.0	    30	....................................	CTAACTGTCGCAGAGCCATATCCACCAACG 	
    349607	    36	 100.0	    30	....................................	GTGGCGCCTGTATTAGCACCTGATTTAAAG 	
    349673	    36	 100.0	    30	....................................	TCTCAGAGAACTCAGACACGTACCAAATGA 	
    349739	    36	 100.0	    30	....................................	AAGAAACCTTTGATAAAATTATTCGTTCGT 	
    349805	    36	 100.0	    30	....................................	GGAGATGAACCGTTTTACAATTATCAGTCT 	
    349871	    36	 100.0	    30	....................................	TCCGTACTAAAGTATTCAGACACTCAGATG 	
    349937	    36	 100.0	    30	....................................	GGCGACACTAAAACAGTGGCATCTTATAGA 	
    350003	    36	 100.0	    31	....................................	AAGCAAATGCTAGAGCTAATCATTGATAACA	
    350070	    36	 100.0	    29	....................................	CCGTCAGGACTTGTTGCGTATGCCGTGTG  	
    350135	    36	 100.0	    30	....................................	ATTCCATTTTAATTAATTCACAACTGAAAG 	
    350201	    36	 100.0	    30	....................................	TTTGCATTTTGACTTTTCCAACGTTGATTC 	
    350267	    36	 100.0	    30	....................................	ATGAAACCATTGATCAAAAAGCAATCACGG 	
    350333	    36	 100.0	    30	....................................	GCTTCTGCTATACGTTCAGATACTAAATTC 	
    350399	    36	  97.2	    30	........G...........................	TTTTGACCATTTCCTTGCAGTTAGCAGCAT 	
    350465	    35	  91.7	     0	..................-...............TT	|                              	
==========	======	======	======	====================================	===============================	==================
        16	    36	  99.3	    30	GTTTTTGTACTCTCAAGATTTAAGTAACTATAAAAC	                               	       

# Left flank :   TAAGAATTTGGATGATTATCTAAGTCATAAACAATTTATTGAGATATGTCAGTTTTTAAACGATATATGTCAAAAATATTCTCATTTTTTCTGTATTGTATTTCCTTCAAATGAAAGTTATTTATACGTAACAAAAGAGAATACGGAATATATTAATATTATCTCAAATCAAATTGAATCCTTTTACGAATTTGACTTTATGTACGAAAGATTTTGTCAATCTTATCCGACTAATGATTATCCAAACGAAGACCAATTCTTAAAATTATTACAAAGAAATGGAAGTTATTTATTTAGTGAAGAAATAGGCCATTTTAGTTTGTCTGTAAGAGATATGGTAACTATCAAAATTTTAAACATGCTTTATCATTTTAATGATAAAGTAACTTTTGAAATTCCACATGTGAATTCGATGGAAATCAAATACCTAATTAATAATGATTGACTTTAAATCAGCCTCGAATTATAATCAAAAAGAGAGTATAAAAATTTAATTTGAG
# Right flank :  TAGTATTCTTAAGTAGGTTTGGTAACTGTTGATTTTTAAATAATTCCATATAACACCAAGAAAACAGCCACTTTCTAGAGTGCCTGTTTTTTCTTACTTTTCTTATTTTTGCATGATTTCTTTGATTTTGTGTGACTTTATCCAGTCTACTGTTTAAAATGTATAATTATTAATAAAATGGTCTTGAAAATGTATATCAAAAAATGCGTTTTCAGGGTTTTTCTTGTTTTTTTGATGCTTTAAACCCTATTAAAATAGGCTTTTATCGTAATTAGATTTTTTAGTCAGTTTTTTCTTTGCAAACCCTTACATATGTGTTATAATGAGAAAAAATAAGAGGAGAGATTCCGATGGAAAAAACATTTTTTATGATTAAGCCTGATGGCGTTCGTCGTGGTTTGATTGGAGAAGTGCTTCAACGCATTGAAAGAAGAGGTTTTACTCTTGATGCTTTGCAGCTAGTTACTCCGAGTCGTGAGCATTTGGATGAGCATTATCAT

# Questionable array : NO	 Score: 6.22
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTTGTACTCTCAAGATTTAAGTAACTATAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:75.00%AT]
# 	Reference repeat match prediction:         F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAAC with 98% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [0.00,-1.20] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-4] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [76.7-73.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.91,0.37   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
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