Array 1 67573-66277 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JPIZ01000015.1 Mannheimia haemolytica strain MH10517 contig_15, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                 	Spacer_Sequence                     	Insertion/Deletion
==========	======	======	======	================================	====================================	==================
     67572	    32	 100.0	    36	................................	GATTAATGCCAGTCATATTGTAGGGAGTTCGATCAC	
     67504	    32	 100.0	    34	................................	CATCACGCCTTGATAATCGACCGGCTCAGATTTT  	
     67438	    32	 100.0	    34	................................	GACTGGGGTAGTTCGCACCCGTTTAGTGTGGGCT  	
     67372	    32	 100.0	    35	................................	TCAAATGCTTTTACGGCAGCGTCGAACTCTCTTGT 	
     67305	    32	 100.0	    36	................................	CACAATATTCACAATCTGTTTTGAGCGACCGGTTTT	
     67237	    32	 100.0	    35	................................	GCCGTCATCAGGTTTACGCCCAATATTTAGATGCA 	
     67170	    32	 100.0	    35	................................	TTCCGCAATGATGATGGGAGCAATGGGGGCATCAA 	
     67103	    32	 100.0	    34	................................	CTCATAATTGCCTTTGCGTTCGGCTTCGGCGGCT  	
     67037	    32	 100.0	    34	................................	TGACAAAAATACATTTTCTTCATCAACTGTATAC  	
     66971	    32	 100.0	    33	................................	AACGCCTGCTTGCGGATAGCCTCGTAAATCGCC   	
     66906	    32	 100.0	    33	................................	ATTTAAGAGAAATACTTTCATTGATTGCAGCAC   	
     66841	    32	 100.0	    35	................................	ACCGCCCACGTATTCAGGAATTGCAGTTCCCGACT 	
     66774	    32	 100.0	    35	................................	GCAAAAATTAGTTGTAACCATTGATTAAACATTTG 	
     66707	    32	 100.0	    34	................................	CAGTTCGTCATCTCTGCCAAATATGCCCAAAATG  	
     66641	    32	 100.0	    35	................................	ACTCTGCCCCTATGCCGTATTCATCACGATGAATT 	
     66574	    32	 100.0	    33	................................	TCCAAATTCACCCACTCAACGTGTCGGAGGAGA   	
     66509	    32	 100.0	    35	................................	CTATTAAGATCTATTTGCATTTAGTTTTCCTCTTT 	
     66442	    32	 100.0	    35	................................	CACCTGAACGGAAATGAATAGTCGAATATGCCATT 	
     66375	    32	 100.0	    35	................................	CTCGTCTTGAATTGGAAAATCAAGGGCGACAATAG 	
     66308	    32	  93.8	     0	..........T............T........	|                                   	
==========	======	======	======	================================	====================================	==================
        20	    32	  99.7	    35	GCAGCCACCTACGCGTGGCTGTGAATTGAAAC	                                    	       

# Left flank :   TGAGGAATTAGCAACTATGCTGATGTTGATTACCTACGACATTTCATTTGATGACCCCGAAGGGCAGGCTCGCCTACGCCGTATTGCTAAGCATTGTTTGGATTATGGTGTGCGGGCGCAATATTCTGTGTTTGAGTGTGATGTTACTCCTGCTCAGTGGGTAACATTGAAAAATAAATTATTGGCAACTTACAACCCAGACTGTGATAGTTTGCGCTTTTACCATTTAGGCAGTAAATGGAGGAATAAAGTTGAGCACCATGGCGCAAAACCTTCAGTGGATATTTTTAAAGATACGCTGATTTTATAAATCGCTAGCCTGTAGTTCTCATAAAAATGTAGCAAGGTTAGCGAATCTATATTGTTCTTTAATAATCAAGGAATTAGAAAAAATAAGGCACAGTATATTGGCGATATGCTATACTTTATCCACTCTCTACAAAACGTTAGCGAATAAAGGGCTAAAAAGCCTGATATTTCAATACGTTATCTTGTAGGGA
# Right flank :  GGTGTACCCACAAATCCTATGTTTTCGCCATTGGCTGCTACCTTCGCATCAATATATATTGAAATATCAATGGCAAATTTGTATGTTGTTAATTAGACTGATTGCATCTGCTATGTATCATAGTAATGACGAAAATATTCTATTTTGCAAAAAATAATCAGAAATTACCCGCTTGTTCGAACTGAGTTTTTGTTTTCTAAGATGTGAAATGATACACTTTAGATAGTTTTAAAATATAGAGACAGTAAGATGAGTAGTACGGAATTATTAGTGAATGTTACCCCAAGCGAAACAAGGGTAGCGTTGGTAGAAAACGGAATATTGAAAGAATTACATATTGAGCGGGAAGCTAAACGCGGGATTGTTGGTAATATTTATAAGGGAAGGGTGACAAGGGTATTACCAGGTATGCAATCTGCTTTTGTGGATATCGGCTTGGAGAAGGCTGCTTTTTTGCACGCTTCTGACATCGTTTCGCATACGGAATGTGTTGATGAAAA

# Questionable array : NO	 Score: 9.25
# 	Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GCAGCCACCTACGCGTGGCTGTGAATTGAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         R Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     R [6,8] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GCAGCCACCTCCGCGTGGCTGTGAGTTGAAAC with 94% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-2.00,-1.40] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [2-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [58.3-65.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.37,9.78   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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