Array 1 410-137 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRWA01000067.1 Escherichia coli strain A431 NODE_107_length_2026_cov_91.7883, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 409 29 100.0 32 ............................. TTCCGCGACCCGGCGATAAGGGAAGATGGGTG 348 29 100.0 32 ............................. TAACGACAGAGGGATTCGGCAGCGAAGAGGAT 287 29 100.0 32 ............................. CGTAGTTTCGGCAGTCCAGTGCCTCGTTACGT 226 29 100.0 32 ............................. GGCTGGTGGGTTCGGGTAACTGGTTTGCTGTC 165 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 100.0 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGTATTGCGCGTAATTGGCGTTTGTCGATGCAAACCCATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATATTTTGTCGCCTCTGAAAAACCTCAATTTTGCCCATCCTGGACTAATCATTATCATTCTCTACAAATTCTGTGGCGTTAATTTTTCGTTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGCGTTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : GCCAGAAAACATGAAAAAACTTTGGGAGGGGATGAGTTCCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACGATGCCTCGCGTTCTTCAATTGCGTTTTGTAGG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 96518-95086 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRWA01000145.1 Escherichia coli strain A431 NODE_11_length_122744_cov_83.9884, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 96517 29 100.0 32 ............................. AACTGCTGGAATTGTTTGATCAATTACCGGAC 96456 29 100.0 32 ............................. ATCATCACAGCCAGCCTCAAAGAGGTTGACGT 96395 29 100.0 32 ............................. TACTAAAAGTCTGGTTCACGAATATCAAAAGG 96334 29 100.0 32 ............................. GCGTTGGAGTTCGCGGCGGCATTATTGAGCCT 96273 29 100.0 32 ............................. AGTCTTTAATCAAAATGGATTTTTATAATGAA 96212 29 100.0 32 ............................. GCCGGGTTAAGAAGGTGTATGGATGGCCCGGA 96151 29 100.0 32 ............................. GGTTACGCCTGCACAGAGTACAATGCGTGGGG 96090 29 100.0 32 ............................. CGGTGGCAGTGATGAGGCGTTCCCAATTAATG 96029 29 100.0 32 ............................. CGCACTCAAAATAGTAAATTAATTTATGAATT 95968 29 100.0 32 ............................. CATCCGGCGCTGAACATCGCCACCTGCCTAAC 95907 29 100.0 32 ............................. CGGTGATGCGCGGTATCGATCAGCATCCGGCT 95846 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 95785 29 96.6 32 ............................C TGATCACATCATGTTTATTCGCGGTCGTATTG 95724 29 100.0 32 ............................. TACTGGAAAAAGCTGGCGACGGTGAGCGCAGC 95663 29 100.0 32 ............................. GGCGAGTCCGTCAGCGGTGCGCCGCTGCAACA 95602 29 100.0 32 ............................. GGACAATGTGAAAAGCTTAATATTCATTACAT 95541 29 100.0 32 ............................. CGACGTTTTCTAATATCACCCAGCAATCAATT 95480 29 100.0 32 ............................. ATTTCATCAAAGCATTAAGGGATGGAATAAAG 95419 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 95358 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 95297 29 100.0 32 ............................. CCAGCCGAAACAACGCCAGCAAAATCGACCGC 95236 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 95175 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 95114 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.6 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 122644-122066 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRWA01000145.1 Escherichia coli strain A431 NODE_11_length_122744_cov_83.9884, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 122643 29 100.0 32 ............................. CTCTTCAGCAATGAAATCGTCAAACGAGATTA 122582 29 100.0 32 ............................. ATTACGCCGCCTCGCGTTTTTAGTCATTTCTA 122521 29 100.0 32 ............................. CGTGGTCGGGATTGTTGCGCCAGTCTCCGGGG 122460 29 100.0 32 ............................. CACGGCTGGCCATTTGAAATACCTGTTGCTCT 122399 29 96.6 32 .T........................... AACAGCGAGCCAACTGGTTTCAGATTGCTGAA 122338 29 96.6 32 .T........................... GCGATCTCGCGGAATACACCGACGAGGCGGGC 122277 29 96.6 32 .T........................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 122216 29 96.6 32 ...C......................... GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 122155 29 100.0 32 ............................. GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 122094 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 10 29 98.3 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ATGGGCCAGAATTGCTGACCAGTTATCGTGAGAGTAATTCATCGGCACGTTAAATCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGGGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.60,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //