Array 1 158067-156327 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXHY01000001.1 Salmonella enterica subsp. enterica serovar Hadar strain BCW_2074 NODE_1_length_614968_cov_7.43454, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 158066 29 100.0 32 ............................. CGACGCTTCCATCGTCTGGCATTCCTGTTCGT 158005 29 100.0 32 ............................. CCCGCGTATTAACAACGACGAGCAGGGCGTGC 157944 29 100.0 32 ............................. GTTGCGCAGCCATTGAGCTGCAAACGGATCAA 157883 29 100.0 32 ............................. CGCCCCCCGCATACAGCGAGAGACGGGCCATG 157822 29 100.0 32 ............................. CGCCGGGCGCGGGAGTCCCGGGCGATCCTCCC 157761 29 100.0 32 ............................. GCCCGAAATCAACTTGCAACATTTCAGTTGGC 157700 29 100.0 32 ............................. CATATGATTGACGACAATGAATTTTTTTTCAA 157639 29 100.0 32 ............................. ATAGTTCATCTCTGTTCTCCAGCGGTTTCTAT 157578 29 100.0 32 ............................. ACGGCATTATCACGGCTATTTCTCTGGAAATG 157517 29 100.0 32 ............................. GACAGGACTTACGACCGGCTGGACTACGCATC 157456 29 100.0 32 ............................. CCACAGCCGCCGCGACAATAAATTAACTCACT 157395 29 100.0 32 ............................. GCTGAGATAATTGCCGATCATCTTGAAGACAT 157334 29 100.0 32 ............................. AATGATGAGGGGCTGGCAACGTTTAGCGCCAC 157273 29 100.0 32 ............................. CTGGCCACTCAACAGGGAAATATCGCGTGCGC 157212 29 96.6 32 A............................ CCCATCAAGATAAACATCATAGCGAGCACCTG 157151 29 100.0 32 ............................. TTTGAAATCGCTATTCTTATTGCTGTAGCAGT 157090 29 100.0 32 ............................. CGTTAACTAAAACGAACAAAACAGGGAAATCA 157029 29 100.0 33 ............................. GCCGTGCGTCAGATCACCCCAAACGCTTTCTTT 156967 29 100.0 33 ............................. GCATTAGATTGCGTTGACGGTCACGTTCTTATC 156905 29 100.0 32 ............................. CGCCTCACTGATATTCTGCGGCGAGCTGAAAA 156844 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 156783 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 156722 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 156661 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCATCCTGC 156600 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 156539 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 156478 29 100.0 32 ............................. AAGCCATTGACGCAACGGAAAACGCCAATGCT 156417 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 156356 29 100.0 0 ............................. | A [156329] ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCACAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAAGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 176606-174748 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXHY01000001.1 Salmonella enterica subsp. enterica serovar Hadar strain BCW_2074 NODE_1_length_614968_cov_7.43454, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 176605 29 100.0 32 ............................. AACTTAACTCCAGCATTCTGGCAATTGTTGCG 176544 29 100.0 32 ............................. GCGACATCAAAATCTATTTTTCATTCTATCTG 176483 29 100.0 32 ............................. CTCCAGCCACATTGCGGCGCGACCGCTTTTAA 176422 29 100.0 32 ............................. CAATGTTTCATGCTACGCAAGAGACCAGAACG 176361 29 100.0 32 ............................. TGGTGGAGTGCCGAACCGCTACCGTTTCAAAG 176300 29 100.0 32 ............................. TCATGGCGTCATTCGGTACTGATATGCCAATG 176239 29 100.0 32 ............................. TCGTTTGTAGCCGAAAACCGGCTGGCGCTGAT 176178 29 100.0 32 ............................. TAATGAATCGCCTTTCTAAAATGAAAGACGAC 176117 29 100.0 32 ............................. GCATCGAACCGCTTATCCGTCTGTACCCACTC 176056 29 100.0 32 ............................. CTTTCATTGCGCAGGGTATGCAGTCGGTTTCC 175995 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 175934 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 175873 29 100.0 32 ............................. AATGGGATGTTCTCGATAATGGCGACGACGAA 175812 29 100.0 32 ............................. CGGTCATTTTAAAGAATCCCGTTAAACAACAC 175751 29 100.0 32 ............................. GACATTTCAGTTTTGAGCATGAACCTGATTCA 175690 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGTTGTTTAGTTCCT 175629 29 100.0 32 ............................. AAAACCGTACAACAGACAAAATATAAATATTG 175568 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 175507 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 175446 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 175385 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 175324 29 100.0 32 ............................. CCAGCTTACACTATTTACGACGTTATTGAGCA 175263 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 175202 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 175141 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 175080 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 175019 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 174958 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 174897 29 100.0 32 ............................. GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 174836 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 174775 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTCCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTGATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //