Array 1 27428-25809 **** Predicted by CRISPRDetect 2.4 *** >NZ_APSK01000091.1 Neisseria meningitidis 94018 gnm94018.contig.90, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 27427 36 94.4 30 ........G...A....................... TTTTTGTATCCATTCCCAGCCGGAAATTAA 27361 36 100.0 30 .................................... CTTCTGCCTTTTTACAAGCTCGCTTTCTTT 27295 36 100.0 30 .................................... TTTGGTAAAGGTTTCTGTTGCGACCCGAAT 27229 36 100.0 30 .................................... CTTTAACTTTGACCGTGTGCAATCCAGTTA 27163 36 100.0 30 .................................... AACGGCAACCCACTAAATTTTGCAAATGCG 27097 36 100.0 30 .................................... AGTATTCGTCGATGATGGAAACTCGAGCAT 27031 36 100.0 30 .................................... ATGATGCAGGCTGCTCCGTCATCGTCTGCA 26965 36 100.0 30 .................................... CCAAATAGAAATACATACGCCGAGTAATTA 26899 36 100.0 30 .................................... TTTCTTTTTGTAATTGTTCTGCCTTTTTTA 26833 36 100.0 30 .................................... CAATAACGGCGAGTTTACGCATCAATGCGG 26767 36 100.0 30 .................................... TACCCACGGCGGAAACCATTGCCACAAAAC 26701 36 100.0 30 .................................... TTAAAATAATAACCCAATACACGATGTTAA 26635 36 100.0 30 .................................... TCCTGCCAATTATCATACATAAGATTTTGC 26569 36 100.0 30 .................................... TTGCGTCTATGGTGTCCTTTGAGATGTCCA 26503 36 100.0 30 .................................... AAAACCAACCGGGTATTCATACACAGCCAA 26437 36 100.0 30 .................................... CCGTTGATGACGGATGTGTCGGGTTGCGGA 26371 36 100.0 29 .................................... TCGGCCGCTTTATTTCTGCCATATCGACG 26306 36 100.0 30 .................................... CCTATGCCTGTTATTGTTTTCAGCCTTTTG 26240 36 100.0 30 .................................... TTTAAAACCGCAAACCAGTTTGTATCCTAT 26174 36 100.0 30 .................................... AAAAAAGTTGCGGGATAAGTTACAGTTTGA 26108 36 100.0 30 .................................... TTCTTCAAATTCCTTAGACGCAATTAATGC 26042 36 100.0 30 .................................... GAATCTTTAAAGGCAGATTCGGGATTTCCC 25976 36 100.0 30 .................................... TGATGCGGCGATACAGCGAGCCAGTTGCAT 25910 36 100.0 30 .................................... CCGTATCGTAGTCTTTACACGGAAGCACGG 25844 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 25 36 99.8 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTCTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA //