Array 1 132584-133709 **** Predicted by CRISPRDetect 2.4 *** >NZ_JHAR01000006.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM N13150 contig_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 132584 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 132645 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 132706 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 132767 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 132828 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 132889 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 132950 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 133011 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 133072 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 133133 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 133194 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 133255 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 133316 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 133377 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 133438 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 133499 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 133560 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 133621 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 133682 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 149965-151628 **** Predicted by CRISPRDetect 2.4 *** >NZ_JHAR01000006.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM N13150 contig_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 149965 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 150026 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 150087 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 150148 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 150215 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 150276 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 150337 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 150398 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 150459 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 150520 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 150581 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 150642 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 150703 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 150764 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 150825 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 150886 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 150947 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 151008 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 151069 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 151172 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 151233 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 151294 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 151355 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 151416 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 151477 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 151538 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 151599 29 96.6 0 A............................ | A [151625] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //