Array 1 4401-4551 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQLJ01000001.1 Thermus scotoductus KI2 N686DRAFT_scf7180000000004_quiver_dupTrim_9113.1_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4401 29 100.0 32 ............................. CTGGCTGAGCGGCTTCAGGGTGTACTGGCGGC 4462 29 100.0 32 ............................. CCAGAACCTGGCCCTTCGGGCCAGCCCCCCCA 4523 29 86.2 0 ......................G.CT.A. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 95.4 32 GTAGTCCCCACGCACGTGGGGATGGCCCG # Left flank : GCCCACCAAGGAGCAGGTCCTCGAGGCCTTGAAGGTGGTCTACGACCCGGAAATCCCCGTGAACATCGTGGACCTGGGGCTGGTCTACGATGTGGAGATCCACGAAAACGGGGTGGTGGACCTCACCATGACCCTCACCGCCATCGGCTGTCCCGCCCAGGACATGGTGAAGGCGGATGCGGAAATGGCGGTGATGCGCCTTCCTGGGGTGCAGGGGGTGAATGTGGAGTTCGTCTGGACGCCTCCCTGGACCCCGGCCAGAATGACCGAGGAAGGCAAGCGCATGATGCGCATGTTCGGGTTCAATGTGTAGGGGACTTACTGGGTGGTATAGTGGGCCTCGAGGTGCGAGGGAGCTGGGTGCGCTCAGAGAGGGCTTTTAGGCTCCGGGTGTGCACCTGGGCTCACGCACGGGGGATCTTGAAAGGCTAATCTGGACTGGCTCCCTTTACATACACATAGAGGGGGGTCGGCGGGGGTTTTTGCCGTCTGGGTCATGT # Right flank : GGCTGGGTTTATGGTGGCGCACCGTGGATTTGGCGAGGGGGAAGCTGGGGTGGTTTCAAGCCTTGTTTTCTTCCTGCATGGGGTCCACTCCCCAGGTTTCCAGGTAGAAGGCTCTCAGTTCCTCGGGCGATATCGGGGAGATTTCCCGTGGAAGTGGGCTTCCGGTTCGGAACCTCATGGCATACTCTTCTATTTCCTCCAGATGCTTCCCGTTTACGCCATGGGCCTGGGCAAATAGGGCAAGGAGGCTTGCCTCGAGGTGAGAGGGAGGGTCGGAGAGAGCGATGGCCAGGGCTTCCTCCCTGTCCTTCCCTGCCATGAGGGCATAGAGGAAAAGGCCCGCCGCAACATCCGTAAGCCTATCCATACATCCTCAGCGTAGCCCCTTGCCTGTTTTCCGTCGGACGGAAAGCCCTACCCCACCTTTCCCCTTGTTTCGGGGATGGATCCAGAGGGGTGCGGGGGTTTCTACCGCCCTGCCCGGTTTACGGGGCCTCATC # Questionable array : NO Score: 5.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACGCACGTGGGGATGGCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTAGTCCCCACGCATGTGGGGATGGCCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1868374-1866150 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQLJ01000001.1 Thermus scotoductus KI2 N686DRAFT_scf7180000000004_quiver_dupTrim_9113.1_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1868373 29 100.0 32 ............................. GAGGTGGTGCGCGAAAAGGGGAACTGGTGAGG 1868312 29 100.0 33 ............................. GGGTTATCCGTCCACTGGTTGGGGTTAGGCACC 1868250 29 100.0 32 ............................. CCAGGCTGGAGCAGGACGAGCCCAGTAGACAA 1868189 29 100.0 32 ............................. GCGTTCAAAGCCCGAGCAGGCTCGGCCACGGG 1868128 29 100.0 32 ............................. CGGATCCGCCGCACGGCTAGGGGGGTGGAAGA 1868067 29 100.0 31 ............................. ATGCCGCACGCTTCCCGCTTGGCGTAGCTCC 1868007 29 96.6 31 ............................T AGACCGGGGCAGGACCTCGAGGGCCTTCCCC 1867947 29 100.0 32 ............................. CTCCACCGGGACGAGTACGTGAGCCCCGGTCT 1867886 29 100.0 32 ............................. CACCCAAGCCAGAGGAGCCACCCCAGCCAGAA 1867825 29 100.0 32 ............................. AGGGCCCGGGCGCTGCGGGCGCACGTAGCCGC 1867764 29 100.0 32 ............................. GCTTGCTCCCCTCCTTCCCCCGCCGTTGACGC 1867703 29 100.0 31 ............................. CCCCCAGACCGAACCCCGTTAAACCCCCACC 1867643 29 100.0 32 ............................. GCCCTGGCCCTGGCCCCGGTGAACGCCGTGAG 1867582 29 100.0 32 ............................. GCCGGTGCCTGAGCTTTCTGAGCTACTCCCGT 1867521 29 100.0 32 ............................. CTTGCGTGCCGGTACATCTACCCCGCGGCCAT 1867460 29 100.0 32 ............................. TGGGGGCCGAGGGTGGTCATCGTGGACACCTC 1867399 29 100.0 31 ............................. AGGACCACCCCCCTAGAAGGGGAAACCTGGG 1867339 29 100.0 33 ............................. CCCCGGGGGGCGTGGTACTCTGGGGGTGAGGTT 1867277 29 100.0 32 ............................. ACAGTGCCATCGGGGGACTTCGCACTCCCCCG 1867216 29 100.0 32 ............................. CGGCCCCTCCTATGGAACTTCCCAGGGTGGGG 1867155 29 100.0 32 ............................. TCTTCCTTCGCGATGGCGAGGTACCGGATGAC 1867094 29 100.0 32 ............................. AAACGGTATAGGAGAGGTGAGTCATGGTCTTT 1867033 29 100.0 32 ............................. GGGAGGGGAGGGTCTGAGGGCCAGAATAGCCC 1866972 29 100.0 33 ............................. GCTAGGGTCCAAACCCCGAACCGACAACCCCGG 1866910 29 100.0 32 ............................. GCTAGGGTCCAAACCCCGACACCGACAATCCT 1866849 29 100.0 32 ............................. GTGGAAACCTGGTGTAAACTTTTGGACAGGGC 1866788 29 100.0 32 ............................. CCCCGGGGGCCGTGGTACTCTGGGGGCGAGGT 1866727 29 100.0 32 ............................. CTGGTGAAGTAGCTGGGCCGCCTTGTCCTCGG 1866666 29 100.0 32 ............................. TAGCGAGGACGGCGGTCCCAGTCCCGTTGTCC 1866605 29 100.0 32 ............................. AGCGTTCGCTCTTCGCTGCCCCCAAACCCGCC 1866544 29 96.6 32 ............................A GGGGCCGGATAGACCACCGGCTGGCCCTGGGC 1866483 29 100.0 33 ............................. ACGATGGGTTCTGCACCAAACTCGTCTGCTACC 1866421 29 100.0 31 ............................. ACAGTGCCGTCGGGGAGCTGCTCACTCCCCC 1866361 29 100.0 31 ............................. CCCCTCGGGGCCCCCCCAGCCCCGGAGGACC 1866301 29 100.0 33 ............................. CGGCATAAGCGCTACCGGCGTGGACCCCATACC 1866239 29 100.0 32 ............................. CATCGGAGGAGGTGGGATGATGCGCAGGGCAA 1866178 29 93.1 0 ..............C............T. | ========== ====== ====== ====== ============================= ================================= ================== 37 29 99.6 32 GTAGTCCCCACGCATGTGGGGATGGCCCG # Left flank : TTCTCATACTGGCGGGTCGGGGCCTGATGATATAAGAGCCTCCCGGCAGCGAAAAGGGCTAGGGCCTCCACCGGATGCAAGGTGGGAGGTCGGTCCGGAATGCGGTAAAGGCCGCGGCCAAGCTGCTCTATCCTGTAACCGGCATGGGACAGGGCCTCGAGGTCCCGCTCCACGGTGCGCACGCTCACACCGTAAAGCTGGGCCAGTTCGGAAACCCGGTGCGGGCGAAGGCTAAGGCGCTCCACCAGGGACAAAAACCGTTCCGCCTTGGACTTTGGGTCCATAGTTGGAAGCATTATAGCCCAAGTTCCGCTATACTGGGGTTACCTGCCCTATCCCTAGCTAGACGTTCAGGGCACCTTGGGGCAGGGGGGTTCTTGACAAAACATCCCTCGCTTCTCACGGGGTTCGAGGCTTTAAACGGGCCTATTGTCTGGAATAGCCCCCTTTACAGACACATAGAGGGGGGTCAGCGGGGGTTTTTGCCGTCTGGGTCATGT # Right flank : AGAATGTACAAGGTTGCCCCGTAGGATAAGCCCCCCAAAGCTTTGGCCAGGAGGGCCTCCAGCCTTCGCTGGAGGTCCATTTCCAGGGGCCGGAGGGCTAGCTGTAACGCGCCCGTAGGCGTGAGGAGGGAGAAGTGGAGAGTCGCCCGCCTGGGCGTGGGGCTTTCCCTGGAGAAGATCTACGAGAGTGTGGAGCTAGGGACTTCTTTCCAGGCCGACTTGGGGGCCAGGTAGTACCATGGAAATGCCATGGGGCCCGAGGAAGTAAAGGCCAGGATAGGACCTTACCGGGAAGAGTTGAGGGAGCGTTTTGGGGTGGAGGCCCTCTACCTCTTTGGCTCCTCGGCTCGAGGGGAGGCGGGTGAGGGAAGCGACGTGGACCTTTTGGTGCGCTTTTCCCGTCCCCCGGGCTTCCTCGGCTACATGGGCCTGAAGCTCTTTCTCGAGGACCTTCTAGGCAGACCCGTGGACCTGGTCATGGAGCACACCCTGCGGCCGGA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACGCATGTGGGGATGGCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTAGTCCCCACGCATGTGGGGATGGCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 1878149-1879035 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQLJ01000001.1 Thermus scotoductus KI2 N686DRAFT_scf7180000000004_quiver_dupTrim_9113.1_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1878149 29 100.0 33 ............................. CATGGTGTTGGGCAGGTTGCTCAGCATCCTGCC 1878211 29 100.0 32 ............................. GACACTAACCCCATTGTCAAGCCCCCCTTCAC 1878272 29 100.0 32 ............................. GTGCTGGCCTGAAAGGCCCGTTTGAAGGCCTC 1878333 29 100.0 32 ............................. TTGTCCACGAGGCTGGTGACAGAGCTGATGCA 1878394 29 100.0 32 ............................. AGGGCTTGAATGAGGGCCAAAGGTTTATCGAT 1878455 29 100.0 32 ............................. GCCCATGGGAAGAGTGGGACACCTGGGAGTGG 1878516 29 100.0 32 ............................. CGCGCCCTCAATCCAATTGGGGCCCTGGCCGT 1878577 29 100.0 32 ............................. GGGGCCGGAGTCCGTATAGCCGTACCCGGCCT 1878638 29 100.0 33 ............................. ATTTGGGGCCTGATTAAAGTTATGGGGTTCTCC 1878700 29 100.0 32 ............................. GGGGTAGGTGGGGGGCAGGAAGGCCGCCCTGT 1878761 29 100.0 32 ............................. GGCATTCACCACTTGGGCGGCCTGCTGACCAC 1878822 29 100.0 32 ............................. AAGTCGTCCCTATCCTCTGGCATAGTAGCCTC 1878883 29 100.0 33 ............................. AGCCCACGGCCCCACTACAGGCTTGGCCGCCAC 1878945 29 100.0 33 ............................. ACCGCCTCGGCCCCCGTCACCAGACCCCGCCAA 1879007 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================= ================== 15 29 99.8 32 GTAGTCCCCACACGCGTGGGGATGGCCCG # Left flank : CCAGAGGAAGAGGTGGACGAGGAGGACCCGACCCGTCCGGGTGGCCTGTGGGACCCGGAGGGAGGGGTGGAGGGTGGGGTGGCCTATGGTGGTGATGATCCTGGAGAGGGTGCCGAGGAGCCTGAGGGGTGAGCTTACTCGGTGGCTGGTGGAGGTGGATACTGGGGTTTTCGTGGGCCGGGTGAGCGCTGCGGTGCGGGAACTCTTGTGGGAGAAGGTGGTGGAAAAAGCGGGTGAGGGCCGCTGCGCCATGGCCTGGCGCACGAATAACGAGCAGGGCTTCGCCCTCCGGCTGCACGGGTATCAGGACCGGGTCCTCAGGGATTTTGATGGTATAGTGCTGGTAGCGGTGCGCAACGCCGAGGCTATGCGAAAGGCGGATAAGTTAAATGGCATAGCCCGGTTCGCACGCGGGGATCTTGACAGTTAATCCTTAGACTGGCTCCCTTTATATACACATAGAGGGGGGTCAGCGGGGGTTTTTGCCGTCTGGATCATGT # Right flank : TCAGCCTGCATGTGGTACGCATTAATGAACAGGACTTTACTCAAAACTTGCACTTATGCACCCTGGGGATAGTTATGCTCGGGGGACCACTTGAAAGGGGCCGCCGGTTTCCCGTCTGATGACGGGGGCCATGACCCAAGCAGCCCTATCCCTACTTTGGACCATCCTGACCCTCATGCCAACCCCCCACCTGCGGGAATCCTTGAAGGCCCTGTTGTTCCTTTTCCTCACCGGTCACGGCAAGGCTAGACCCCAGCACAGCAAGACCAAGTCCCCCTCCGCCCTCTCCCGCTTCCTCAACCGCTACCCCTGGCCCACCCGCGCCCTCATCCGCCTGGTCCGCGAGGAGGCCCAGAAAGCCCTGGACCGGGCCAGGCGGAGAAAGGGCCCCAAGCCCCGCCTCCTGGTGGTCCTGGACCTGGTCACCCTGGAGAAGCGGGGCCGCTTTCCGGCCCTACCCCTCTCCTTCTTTCACGGCAAGTGGGGCCTCCACCTCGTGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACACGCGTGGGGATGGCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTAGTCCCCACACGCGTGGGGATGGCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //