Array 1 294751-295297 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXNE010000005.1 Listeria monocytogenes strain 2015L-6039 NODE_1_length_1026089_cov_54.9912_ID_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 294751 29 100.0 38 ............................. TTTTGAGCGAAAGGGTGAATAAAAATGACAGCAGAAAC 294818 29 100.0 36 ............................. TGGCTCAAATCCGCGTGACGAAAGTTCAGGTTTCAT 294883 29 100.0 35 ............................. TAAACCCGCAACCGGAAAGCCAGCGACTTTTATAC 294947 29 100.0 35 ............................. GCAGCTAAAATAGATATTAACATGAGTGAATCTGT 295011 29 100.0 36 ............................. TATCATCTGGAGTAATTAACTTTTCATAACTTGTAG 295076 29 100.0 35 ............................. TTTGTTTCGACAATATTAGACACAGAGTCAACGGG 295140 29 100.0 36 ............................. TAAAGATAAGCAAGTAGCATCTGCAGGTCGATTACT 295205 29 96.6 35 ..................A.......... GTTTTAGCCCGTGCTGTAAAAAACTGACTATCAGT 295269 29 75.9 0 A.....A.......TCA.A....A..... | ========== ====== ====== ====== ============================= ====================================== ================== 9 29 96.9 36 GTTTTAGTTACTTAATGTGAAATGTAAAT # Left flank : CGTCCGTGCCACTACTTCAGCTGACATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACTATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTTGTGATCTGTCGACCTTGAGTAGTGTGAAAAACACCGGGGATCGACAGAATGTTGTAAGTGGCTGGGGGAAGGGAAGTTTGGCGGTATTTGCTTGGGGAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : TACCCTTCATATGCCCCCCACCATCATCCATCAAACCAAAAAAACGTGACTGCCAAACTCGCAGTCACGCTTTTTCTCAATCATTAAACTCTTTCAAAACATCCTCTTTAATTTCAGTATAATTGGTTACTTCCTCTTTCTCCTCGGAAATGAAATTATATGCTTCCACTTCTCCCAAATTCTCGAAATCGGTAAGCGTAGCGTCTGTTTCTTTCAAGTCTTCATTAAATTTGCCGTAGCCCATGCTGATGATTGAACTTAGTTTTTCGCTGTCATGTCCGCCACGTAAAAATAATGTGTATTCTTGCTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATACGCGCCTTCATTTAAATACCAAGGTTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAAGTGCCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATAGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTCTTATTTTTCACT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 312126-314624 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXNE010000005.1 Listeria monocytogenes strain 2015L-6039 NODE_1_length_1026089_cov_54.9912_ID_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 312126 29 100.0 37 ............................. ACCTTTAAGAAATGTCAATTTAAATATTTCTCGTCTT 312192 29 100.0 37 ............................. TCTTCTCTGAACGCATCAGAGCGATTTTGAGACTTTT 312258 29 100.0 35 ............................. ACTGGAAAAGGTTCCGAAAAAGAACGAGAAGCACT 312322 29 100.0 37 ............................. CATTGATAACGAAAAACACATTGTGCAGCTTGAAAGC 312388 29 100.0 38 ............................. AGGCCTGAAATTTTAGCATTGATATCTTTAGCGATTTC 312455 29 100.0 35 ............................. AAAAGAGTTTAAAGATAACCTTGTTAAGTTCTATA 312519 29 100.0 36 ............................. ATTCGACTTCCCTAACATCCTGCCAGGCGTGTTGGT 312584 29 100.0 34 ............................. GTCGAAGGCGGCAATGAGTTGCTTGCCAGTTTAA 312647 29 100.0 34 ............................. AATTAACAGAAGCGGAAATTAAAGGTATGCCCGG 312710 29 100.0 36 ............................. GAAGATTTCGATACAAGATTCTACTTTGATGCTAGC 312775 29 100.0 35 ............................. TTTCTAAAGTACTATCTATTCCGAAGTACACTGCG 312839 29 100.0 37 ............................. TGTTGTTTGCGATTTATGGTTATCTTGTAGACCCGAC 312905 29 100.0 35 ............................. AAAATAGAAAATGAATCAACTGCCGATATTTTCGC 312969 29 100.0 38 ............................. CAAACTATGAAATACGCGGTTGATTTTGGCTTTAATGA 313036 29 100.0 37 ............................. ATTATTACACCATTGATTATAAAGGCTAGTGATTTCA 313102 29 100.0 37 ............................. GATATGTGAAATTTTCAAATCGATTTCTCGTTTTAAT 313168 29 100.0 34 ............................. ATTTTCACTACTAGGATAGACGTTGATTCAATTG 313231 29 100.0 36 ............................. TGACTTCCAAAAATAGCAGAGATTGCCGCCGCTTTT 313296 29 100.0 36 ............................. AACCTTCGATTTCATTCACGATTATTACGAAAAAGA 313361 29 100.0 34 ............................. GAAACTGAATTCACAACATTAAACGATAGAATAA 313424 29 100.0 35 ............................. ATTATTTCTAGAGAGCGCTGGGAACAATACTTAAC 313488 29 100.0 37 ............................. TTTTTCGTTCATAGTCTAATTGATAGGAAATAACATC 313554 29 100.0 36 ............................. TTATTCTCCTTCCTTTGCCCCTCGAATTTTATAGTC 313619 29 100.0 37 ............................. ATGGCTTAGAAACGTTCGGTTTCAATTTAGAAGATTT 313685 29 100.0 36 ............................. CGCATAGTCGGAATAGTCCAGTTGTTGCTCAATAGA 313750 29 100.0 34 ............................. GTTACTTATAAAGCGTCTTTCGTTGCTTTAAAGG 313813 29 100.0 36 ............................. CCTTCTCCCTCTCGCCACGTATGCAAACTGCTTTCG 313878 29 100.0 37 ............................. AGTTATTCCTTTTAACAGAAATGCGTGGCACTGTGGT 313944 29 100.0 35 ............................. AACAGACTGATGAAAGAATTTTCTTTCGTTCCTGA 314008 29 100.0 36 ............................. GTCTTCGGGTCCGGAAGCACTTCCATGAATCTGATT 314073 29 100.0 36 ............................. CTAACATATTGGTCCAAATTCTTCGGAGCGATTACG 314138 29 100.0 36 ............................. ACAAGATACTTTTCGAGCAGACAATAATAGACGTCG 314203 29 100.0 36 ............................. AGCGTTTTGATAAGCTTTTCTTTGATGGTGTTAAAC 314268 29 100.0 37 ............................. GAATGCCTCGTTTTACGTACTATGTAGAAAAAGACCC 314334 29 100.0 37 ............................. TTTAATGCGTCAGGTAAACGCTTTTTTCGACACTCTT 314400 29 100.0 34 ............................. AATTTCTAATCCTAAATTATCCTTATTTTCCTCA 314463 29 100.0 36 ............................. TTCAGTAACATGTTCGCTGTAATCACGAATCTGAAA 314528 29 100.0 38 ............................. AAGTCCGAGCGTTTTCGCTAACGCAGCTGATACATCCG 314595 29 93.1 0 .......................A....C | C [314618] ========== ====== ====== ====== ============================= ====================================== ================== 39 29 99.8 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTTGGGAAATCATTGGGGGAGAAAGAGTTTAAAGTTTTTAAGCGAAAATCTAAAGGGATAAGTTATGATTTTTACGCAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCATAAAATAGAGCGG # Right flank : CTTCCTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACCTAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCGCAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATTCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTTTCAGCAAATCCTGCTCCCGCGAAAAACAATCCCCACACAAGCCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGTGTCTGTACTTTCTTATTCGCAAGTAGTTCCTTCTCCACACCAAATGTCTTGGCTGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //