Array 1 297184-298354 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP048792.1 Pasteurella multocida strain VP161 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 297184 28 100.0 32 ............................ ATCCGCAACGATGGGCTACCTTTAATTAAGAA 297244 28 100.0 32 ............................ TTTCACATTGCCCGCTTTTTGAAACTCGGCGA 297304 28 100.0 32 ............................ TTTCACATTGCCCGCTTTTTGAAACTCGGCGA 297364 28 100.0 32 ............................ TAATAACTGAATCTAACTGATTGAATTAGATT 297424 28 100.0 32 ............................ AAGCGGAAGGCTACCAACAAAACGGCACAGAA 297484 28 100.0 32 ............................ ATTCATTTTTACTGCTGGAAACAAATAATTAT 297544 28 100.0 32 ............................ TAATTTTGACCAAGATCAAGCTAAAGCTGATG 297604 28 100.0 32 ............................ TGCAGTCAACCACTTTGATGTAATTAATACAA 297664 28 100.0 32 ............................ TGAGATTGAAGCTCGATTTGATGCAGAGAAAT 297724 28 100.0 32 ............................ CTGCAAAGTTTAAACTACTGATTAAACTCGTG 297784 28 100.0 32 ............................ TAGAATCAAACGTGCTGCGGATTTTTCACACC 297844 28 100.0 32 ............................ ATCAATGCGTGTGCGATTTCTTGTTGATGTAA 297904 28 100.0 32 ............................ ATCAATGCGTGTGCGATTTCTTGTTGATGTAA 297964 28 100.0 33 ............................ CCAAATCATCGCCCAAATATCAGGTGTTTTTTC 298025 28 100.0 32 ............................ TTAAAGGCGCTTTACAAGTGGAAGAAGTAAAA 298085 28 100.0 32 ............................ TCAGGAATATTATCTAAGTTATCAAACAATTG 298145 28 100.0 32 ............................ AATCAACTGTTTAAAAGTTCCGCGCTACACAC 298205 28 96.4 33 ............T............... ATCGCGGAGCGATTCTCGCAAAGAACCCGCGTA 298266 28 100.0 33 ............................ AAAAAAGAGCTTGAGTTACTCAAAGCAAAACGT 298327 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================= ================== 20 28 99.6 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCAAAGTGAGTAAAACGCCGTTGCCTACCGAGCACCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGTCGCAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACCGTGCCTCACTTTTAATCTCATTGTTAACCCTTTTTTCTTATTTGGAAAGTTTCCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : AACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATGCCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAAACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCCAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1516870-1516603 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP048792.1 Pasteurella multocida strain VP161 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1516869 28 100.0 32 ............................ TCTTTTAAAGACCTCTTGATTGTGGTGTGCTG 1516809 28 100.0 32 ............................ AGCATCGGAAATGGGCAGAGTTGCAGATGTAT 1516749 28 100.0 32 ............................ TTTCACTAGAACGCCTGAAAGCAATTTACCCA 1516689 28 100.0 32 ............................ GCGTGCTAGTTTGTCTGCTGTTGCTTTCAAGT 1516629 27 82.1 0 ............A.......T..C-..T | ========== ====== ====== ====== ============================ ================================ ================== 5 28 96.4 32 GTTAACTGCCGTGTAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAGTCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGCTTAGCACCTCGCACCAAAGCACCGAAAGAGGGAGAAATTAAAACGGTCAGTAAAAAGCAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAACAAAAGAAAAAAGTGAAACTGCGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTCTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATCGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : TGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTGGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCTTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTCTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAAGGCATCGTTTGT # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //