Array 1 1027102-1026336 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP033336.1 Streptococcus pyogenes strain TSPY165 chromosome, complete genome		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence                	Insertion/Deletion
==========	======	======	======	====================================	===============================	==================
   1027101	    36	 100.0	    30	....................................	TATGTAGTTCCAATCGAGTGAGTCATCCTC 	
   1027035	    36	 100.0	    30	....................................	CTAATGTGGAAATGTGAGTTTATAAGAAAA 	
   1026969	    36	 100.0	    31	....................................	TGAAAAAGTTGAAGAAGATGATTTTTATTAT	
   1026902	    36	 100.0	    30	....................................	AAACGTGATTTTAGCAAAGAGGCGAATATG 	
   1026836	    36	 100.0	    30	....................................	GCGTTTTCATCGTAATTTGCCTCAACGTTT 	
   1026770	    36	 100.0	    30	....................................	TAACTTACAAACGATCCACATGTTAACGAG 	
   1026704	    36	 100.0	    30	....................................	AAAATCGGGATTGCAACTGGTATTATCTTA 	
   1026638	    36	 100.0	    30	....................................	CTAATGTGGAAATGTGAGTTTATAAGAAAA 	
   1026572	    36	 100.0	    30	....................................	GACGAGAAAAAGCCTTTATCAGAAAAGCTT 	
   1026506	    36	 100.0	    30	....................................	GACGAGAAAAAGCCTTTATCAGAAAAGCTT 	
   1026440	    36	 100.0	    30	....................................	GACATATTAACGTCCTTTCTCCTGCTTTCC 	
   1026374	    36	  91.7	     0	.......................G..A.....T...	|                              	CT,T [1026339,1026345]
==========	======	======	======	====================================	===============================	==================
        12	    36	  99.3	    30	GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC	                               	       

# Left flank :   AGAAACCCGAAGTGAAATCGATGATTGACAAATTGGTTGCTACGATTACAGAACTGATTGTCTTTGAATGCTTAGAAAATGAATTAGATTTAGAGTATGATGAAATCCCAATCCTGGAATTGATTAAGTCCTTAGGAGTAAAAGTAGAAACGCAAAGTGATACTATTTTTGAAAAATGTCTAGAGATACTTCAAATTTTCAAATATCTCACTAAGAAAAAGTTGCTTATTTTTGTCAATAGCGGAGCTTTTCTAACAAAGGATGAAGTGGCTAGTTTACAAGAGTATATATCATTGACAAATTTAACAGTTCTCTTTTTAGAACCACGTGAACTATATGATTTTCCGCAGTATATTTTAGATGAAGATTATTTCTTAATAACTAAAAATATGGTATAATACTCTTAATAAATGCAGTAATACAGGGGCTTTTCAAGACTGAAGTCTAGCTGAGACAAATAGTGCGATTACGAAATTTTTTAGACAAAAATAGTCTACGAG
# Right flank :  ATTGCCAATGATAACTTGAGAAAGAGGGTTCATACCAGCAGTCGGATACCTTCATATTCTTTTTGTTAAAGCGTTTTCATGTTATAATAGGCAAAAGAAGAGTAGAGTGATGGAACCAACATTTTTTTATGATTAAGCCAGATGGGGTTAAGCGAGAGGGTTAGTTGGAGAGATTTTGCGGTGGATTGAACGCCTAAGATTTACGTTTGAGCGATTCGAGCTAAGACAAGCTAGTTCGAAATACTTGGCTAAGCACGACGAGACCTTGGTGATAAACCTTTTGATCCTAAACTTAAAGCTTACATGACAAGTGGTCCTGTTTTAATTGGGATAATTCTTGGGGACTAAGGTGGTTTTGTCTTTTTGAACCATGCATGATGAGAGTAACCAATCCTACGGATGCTCTTTGCGGAACCATTCGTGGGAATTTTGCTCAGGCTCTTGGTGATGATGGAGGTATTTTTAACATGGCGTATGGGTCTCATTCAAGAGACTCTGCT

# Questionable array : NO	 Score: 6.22
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:61.11%AT]
# 	Reference repeat match prediction:         R [matched GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-0.20,-2.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [6-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [60.0-66.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,5.28   Confidence: HIGH] 

# Array family : II-A/B/C [Matched known repeat from this family],   
//