Array 1 3984-46 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCRM010000058.1 Lacrimispora saccharolytica strain DFI.5.56 GABJIHDF_58, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 3983 32 100.0 34 ................................ ATGATGGTTATACCAGTGATGAAAATTGGCATGG 3917 32 100.0 35 ................................ AATTTTGATTACAAGTGTTGCGTGGGTGTGTACCT 3850 32 100.0 35 ................................ ATCATCAAAATTGACGGCATCAAAAAGGTAGAAAG 3783 32 100.0 35 ................................ CTTTACTGGCAAAGAATTTGAAGCAGTTATTTACA 3716 32 100.0 34 ................................ CTTTACTGGCAAAGAATTTGAAGCAGTTATTTAC 3650 32 100.0 33 ................................ GGTTACGACAATGCAGAAGATTATGCGCAGAGT 3585 32 100.0 33 ................................ TCTCTATGGATTTTGCTTTTGCTATATTCTTCC 3520 32 100.0 35 ................................ TGTTTCGTTGTCTGTTTTCTTTTCTGTCGTCTCAC 3453 32 100.0 37 ................................ CCTTTATCCTTCTGAAATGCATTCTAGCAGTGGAAAT 3384 32 100.0 34 ................................ CCGGACAAAATGTCTGATTGTTTGCATACGGTGG 3318 32 100.0 34 ................................ ATCGGCAACGACCTAGACGAGTTACAAGAATACC 3252 32 100.0 34 ................................ TTGTCCGTCAATCTGTATATCTTTACCGGTTGTG 3186 32 100.0 35 ................................ CTTTTTATTTATTGTCATGTTTGGAATGCCTAAAT 3119 32 100.0 34 ................................ ATCTCTGGTTAATATCATGTTTTTTTACACCTCC 3053 32 100.0 35 ................................ AACCTGTGCGTTGTAATTCCCAGTATTAGCCCAAT 2986 32 100.0 36 ................................ ACTAGATTTAATCAATACAGGTGTTTTCTGAGCGTT 2918 32 100.0 35 ................................ CTTTTCGCTTAGTTGTTACAGTTAATGACCACGAT 2851 32 100.0 35 ................................ CTTGCGGATATGCTATTTCCTTAAATAGTGCTGAT 2784 32 100.0 34 ................................ TTCAGGTAACTGCTATCTTCTAACGGCAGATAAC 2718 32 100.0 35 ................................ TTCAGGTAACTGCTATCTTCTAACGGCAGATAACA 2651 32 100.0 33 ................................ TGCTGACTGTATAGCCAATAACTTTGCATTGTG 2586 32 100.0 34 ................................ CTCTTACACTGTCAATATATTCGTCTGTTGTACT 2520 32 100.0 34 ................................ TTGGTCGGAGGATGCAGTCGCTAGTAATATGAGT 2454 32 100.0 34 ................................ GTCTTTTAAATACGCATATTTGAAAGACGATAAT 2388 32 100.0 34 ................................ TTCCGGTAACTGCTATCTTCTAACGGCAGATAAC 2322 32 100.0 34 ................................ AAAACTGGATTGATTTTCTGACAAGTCTTGGATA 2256 32 100.0 33 ................................ ATTTTGTCCCTAGTGCCTGCCGGAAAAACTATA 2191 32 100.0 35 ................................ AACATTGCTTTCGTCTGGCCGCTGTCCTGGTAAGC 2124 32 100.0 34 ................................ AACATCACCATTGACAATCACAATCCTTGATATT 2058 32 100.0 34 ................................ ACTGACATGAATCTTCTCAGAATCCAGTTAAAAG 1992 32 100.0 33 ................................ CCCATATATCGTTAACTGGTGAAGCGGTAAGTG 1927 32 100.0 34 ................................ TGCGCAATTAAAAATTGAATATTAAGCAAGTAAG 1861 32 100.0 35 ................................ AATTCAATAAGTGTTAAGTCTGGAAACCAATTTTT 1794 32 100.0 34 ................................ GTGTGACTTTGAGACAACAGTTTATAAAGGACAA 1728 32 100.0 33 ................................ TATGTTGGAGATGTGGTTAAACCAAACAAAAAA 1663 32 100.0 34 ................................ ACATGAAAACATTTTTGGTATCTGCACTGGTTTT 1597 32 100.0 33 ................................ TAATGACGATATATCTCTTTCAGTTTTTCGAGT 1532 32 100.0 36 ................................ CATATCTGTATATATCCATCTGCCATGCTGGTATCT 1464 32 100.0 34 ................................ TAGCAGTGGCAACCGTTACCCAATAGGTGTCCCT 1398 32 100.0 36 ................................ TTTTTAATAGCGAGGTACAGCAACAGGCGTATTTTA 1330 32 100.0 35 ................................ ACCAAAGGAAATATCTTCTGGAATAGTGTGTAATC 1263 32 100.0 34 ................................ TTAGCACCTCATCGGTAATGACACGTTCCTTTTT 1197 32 100.0 34 ................................ ATCATAGTTAGCACCGGTATACATTGCATCTACG 1131 32 100.0 34 ................................ CATGATGTCGTTATCGTTCATGCGGAGAAGTGCT 1065 32 100.0 35 ................................ ATTTGTGCAGCCATGGCGACATAGGTTTTCGTTGC 998 32 100.0 35 ................................ ATGTAACTATCAGAAGAAGTACATTACAGAGGATT 931 32 100.0 33 ................................ ATTTGTCGGAGGTGTAGCGAATGAGTAACTATA 866 32 100.0 35 ................................ ACATTTTGGCGTTGAGCAAGTAGCAACCACATTAC 799 32 100.0 33 ................................ CAAGAATCACGGTAACCTTGTTACAACAGGAAC 734 32 100.0 36 ................................ ATGAGATTGCTTTTATACTGGTTAGCGCTCCCATGC 666 32 100.0 35 ................................ TACCACCGGCATACCAGAGAACTGACTGGAACCAT 599 32 100.0 32 ................................ AGAGGATCTCTTTCCGGTCTATGATACCTACG 535 32 100.0 33 ................................ CTGCGGAGAACATCTCACCGAACTCAAGGTCTG 470 32 100.0 33 ................................ TTGCCTCACACACAAAGAAAAGAGGTCTCTTGT 405 32 100.0 34 ................................ ACTTTGTTCACCTCACTCTTTTCTGTTGCTCTGC 339 32 100.0 33 ................................ TTACTATTGTTACTATTGTTGTCAGGTTTTCTC 274 32 100.0 34 ................................ TTTTCCCGGAATGCTTCGGACGGCGGCAACATAT 208 32 100.0 33 ................................ ATTGGCTGTAGCTTTGTCAAGGCTCATGTTAGT 143 32 100.0 34 ................................ ATAAGATTAACGTCTATGCACCGATCAATCTGTG 77 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 60 32 100.0 34 GTCGCTCCCCTCGTGGGAGCGTGGATTGAAAT # Left flank : GGTTATCCTGCATTCCTGTGGAAGTGAGGTGCGATATGTTAGTATTGATCACATACGATGTCAACACAGAAAATGCGACCGGAAAAGCGAGATTACGCAAAGTGGCAAAACAATGCGTTAATTATGGCAGAAGAGTTCAGAATTCTGTGTTTGAATGTATTTTGGATAATGCTCAGAGCATTGCATTGAAGGCAACACTTGAGGATATTATTGATACAGAAAAGGACAGTCTTCGATTCTACTATCTGGGTAATAAATATCAGACCAAGATTGAACATATCGGGGTAGACAGAGGAATCGCCCCGGATCAGACACTGATTTTGTAACTGATGCGAAAGCCAAGCATACATAAAATGCCTGGGGGATTCGCACCTTATAAATTATGCGATTTATTGAAATAACATACAAAGATATTTTTAATTAAAATAATTTGTTGTTAAGATTAAATATTTTAGACAATTTTTGCTGAGAGAAAAGAGAACTTTTTGGCGAAAATTGCT # Right flank : TCTACGGCACTAGATACACTTGTGGCTACTCCTGCGTCGCTCCCCT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCTCGTGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-4.90,-5.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 106984-104628 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCRM010000008.1 Lacrimispora saccharolytica strain DFI.5.56 GABJIHDF_8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 106983 32 100.0 34 ................................ CCTTGCTCTGAGGGAAACTTAAGAAATCTCCGTT 106917 32 100.0 34 ................................ CTACGGCACTAGATACACTTGTGGCTACTCCTGC 106851 32 100.0 33 ................................ CGTCTACTCTCTTTTTTGTGGGAATATATGACT 106786 32 100.0 33 ................................ TGAGACGGCTGCAGGTGGTGGCACCGGTAATAT 106721 32 100.0 33 ................................ AACAGAATGCGACATCAAACTACCTCACTTTCT 106656 32 100.0 35 ................................ AGTTATATGTGGAACGGAATGTTCCAGGGAAAGTC 106589 32 100.0 35 ................................ CTTTTTCAGCATCTTTGAGCAGAAATGAAAATACT 106522 32 100.0 34 ................................ CTTAAACTGCACTTCATAACCCAAATCTGTAAGC 106456 32 100.0 35 ................................ ATCCATCTCTCCCTGGCAATGATCAAAGCAGTTTG 106389 32 100.0 36 ................................ GCATTATGCTTCTCTTTCCATGCCCGGCATTCATCC 106321 32 100.0 34 ................................ TTCTGAAGCTCCTCCGATAATATCTTTTCCTCCA 106255 32 100.0 35 ................................ TCTCAATGGGAGCTGCACCGCCACCGATCTTTAAG 106188 32 100.0 35 ................................ TCAAGTACTCTGCTTCCAGCACGCGCCCGTTATCC 106121 32 100.0 33 ................................ ATTTACCTGATAGATGTTGATTCGGTCTTCGGA 106056 32 100.0 35 ................................ CTATATATCCGTCACAATTTACAATATACACAATG 105989 32 100.0 37 ................................ CTACCATGGCTTACACTACTGCTCTACGCGTGCGATC 105920 32 100.0 35 ................................ AAAAAGAGCAGGCAGAATGTTTATCTGCACAGGAA 105853 32 100.0 34 ................................ TTCTGTCGCCACAATACCGGATAAGTTGATATCT 105787 32 100.0 36 ................................ TTTGCATTTACGTTTGTTTTTGCACGATATTGCTTT 105719 32 100.0 35 ................................ AATTCCTTTTCTTGCTTGGATGGAATCGGCGGCTT 105652 32 100.0 32 ................................ GATTTTTGACACGTCGACGCCGATTGCCTTAG 105588 32 100.0 35 ................................ TAGATGTTGCTACGGGTAACAGCAAGACAGCAGAA 105521 32 100.0 34 ................................ CGGTTTCCGGCTGTACCTTAGTTGCAGCATCGGC 105455 32 100.0 34 ................................ GATGCTATCACCGAAGAGGTTTCCGGAGCCGGTG 105389 32 100.0 34 ................................ ATGTATGAGCCGGTATTTATCAAGACACAGGCAA 105323 32 100.0 33 ................................ CCTGGAGTTAAAGAGCAGCTGTGCCTCATCTAT 105258 32 100.0 34 ................................ AAAGTAAGCCTTGACTGGTTAGTAACTGGAAAAG 105192 32 100.0 35 ................................ TCCGGAAAATAAAGGTAAATCGTCCGGGTCAGGAC 105125 32 100.0 34 ................................ ATCAAATTCACATCAACGCATCTGTCCAACTGCG 105059 32 100.0 35 ................................ CGCGGGGTTCCAATAGAGGTCTAACTTGCTTACGC 104992 32 100.0 34 ................................ GCTTCCAAGATCTAAGTACTGTATGGATGAGGCT 104926 32 100.0 33 ................................ CGGTAACACTACCACCATAGCCTCCGGTATAGG 104861 32 100.0 35 ................................ ATCTGATGTTAGACTGCGGACTCCGGCGTCAGGAA 104794 32 100.0 35 ................................ ATTTCTGTCTTCATCCGGACTGCCTCCAATCTGTT 104727 32 93.8 36 .............C.......C.......... GCACGGACGATGGGGATAATCTGTTTTTTCAACATG 104659 32 84.4 0 ...........T.C.......ACC........ | ========== ====== ====== ====== ================================ ===================================== ================== 36 32 99.4 34 GTCGCTCCCCTCGTGGGAGCGTGGATTGAAAT # Left flank : GTGGATTGAAATCGTCTACTCTCTTTTTTGTGGGAATATATGAC # Right flank : AGAAAAGACAATCGTATATCATGTACTATGTGATTACATAGAAGGAGGATATCTAATTGAGTAAGACGGTCAGGCAAAGCAATTGGGCAACGGAAACGCTTATGGAAGCCCCATTTTGGAGAAACGGAATGACACCGGAAGAATACGAGACGGAAAACAGATATTTGAGTAAAAAATTCTATAAGCAAAAAGATGGAAACTATATGCCACTTTGGATGCAAGAAGAGAACATGAAAGAATAATTAGTTCTTTGGATTTTTTTATTTACAGACAAGAAATGCTTTATATTGAAAGCAAAACAGATTGTAATAATTTCTTATACTATTCTATTTTATGTCTGATATCGTATGTTGTGTTGATAACTATGATGTCTTTAGAAATTGGTTTTAACAGAATCCATTTATATTTCCTATGTAACAATTTGAATTTTTAATGTTATGTCACGTGAATTTTTGTGTAAAATTGTGTATTTTACTATTGATTTTGTGTATAATTGTGTA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCTCGTGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-4.90,-5.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //