Array 1 84245-80859 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUDO01000012.1 Ruminococcus sp. AF41-9 AF41-9.Scaf12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 84244 30 100.0 35 .............................. ATGTAACCAAGGTTTTCGTATAGGAGAATCACTAG 84179 30 100.0 38 .............................. TAAGTATTGCAAACCTAACTTCTCTGTATTGCGAAGTC 84111 30 100.0 35 .............................. TATCATCGCATCTGCACTGGCAGGAATCCTGTTTA 84046 30 100.0 36 .............................. AAGTTTTTACCGCGATAAATAGCATTATGAGCTGCG 83980 30 100.0 36 .............................. ACAATTTATACACACGTTTTAATGTATTTTCTGATT 83914 30 100.0 37 .............................. TGTATTCTCCTTAGCTGCTCCGAGGTCCTTATTTGAA 83847 30 100.0 35 .............................. GTGCAAGAACCTCTGCAACTTTATTTTCGGGATTG 83782 30 100.0 36 .............................. AAGCACACGCCACACGACTGCCGACACACTTTTTCT 83716 30 100.0 37 .............................. CCATTTCCGTTGGCGTGTCCTAAATACTCGTTGTCAT 83649 30 100.0 37 .............................. TAAAATGAATAGTTGAATGTGGCACTTGCTGTCGGAA 83582 30 100.0 39 .............................. TGGATGAGATATACGAAACCTTCGTGATCTCCTGCGTGT 83513 30 100.0 36 .............................. ACTATATGCGTACATAAAACTGTCTGGGTTGATATA 83447 30 100.0 36 .............................. ACAATCGCCCGGTCGGGTATTGGATAAGGCAGTACC 83381 30 100.0 36 .............................. AAAAATTAAAAAAGCCTCCTCTGACAGCAAGACTTT 83315 30 100.0 35 .............................. GCCGCCATCGTTGCAGCAGTCGCAGGACACAAAAA 83250 30 100.0 35 .............................. GAAGACAGGAACAGGAGTGACACAGGCAGCAATGC 83185 30 100.0 35 .............................. CCTGTTCCTGAAGAATCTCCATCTCTGTCTTCTCT 83120 30 100.0 37 .............................. TCAGTCCATTTCCTGACGTTCCTGCCGTCTGGCAGGT 83053 30 100.0 34 .............................. TAGATTTTTCTGTGCTCCCCGGAGTCCGTAGTTA 82989 30 100.0 36 .............................. TATTTCACAATGGAATATAACAAAGGTCGAGTGATC 82923 30 100.0 35 .............................. TCCGTATTATTGTAAGAAATGCGGATTACTTATTC 82858 30 100.0 38 .............................. ATAACAATTATGAAACCATATGAATCAGCAACATCTTC 82790 30 100.0 35 .............................. GCGATTGCTGCTATATCGCATGTAGAAACGGAAAG 82725 30 100.0 36 .............................. GGGCACAAATGGATAAGAGTCGAGAGAGGCGGGATC 82659 30 100.0 35 .............................. GAAGGTTCATGAAGTTCTTGGAAGAGTCCTGGATG 82594 30 100.0 37 .............................. AATGATGTAATTCTCAAAGGAAGATTGACTTGGATTT 82527 30 100.0 37 .............................. CAGGAGTTTATGGCAGACCCATATCCGGGCATCTTTT 82460 30 100.0 37 .............................. ACCGGTGCAAGTCCGTACAGGTCAGCGTAGACGTTCA 82393 30 100.0 36 .............................. CTACAACTGTATTCATCAAATCTTGAACCGCATTCT 82327 30 100.0 36 .............................. TCCTTTCTGAATGTACTTGACTTACCGGAAGGGTTT 82261 30 100.0 35 .............................. AAGAAAGGGGAATCATTATGAGAAAATCGGTATTT 82196 30 100.0 34 .............................. CACAAAAAGAAAACTTGCGAAACTCCTGCACCAG 82132 30 100.0 36 .............................. TTATATCGCAATATCCAGACGCGAAAGCAATAAAAA 82066 30 100.0 34 .............................. GAAGGAATGTCATCACCACCTGCGTTGCCTGCGA 82002 30 100.0 35 .............................. CATAATTCAGAGAGGTTTTGCTTTCGGTCGACAAC 81937 30 100.0 35 .............................. GAAGTTCATCTGTAAAAGCAAATGCTTCTTCATTC 81872 30 100.0 34 .............................. TATGTCCACATATAACGGGAAGTCTTTAGAATTA 81808 30 100.0 38 .............................. ACAGAAACATATAAACCAACTTCCAGATTCGCCGCCTG 81740 30 100.0 36 .............................. TTTTTATACTCTACAGTAGTTCCATCACGGTTGATC 81674 30 100.0 37 .............................. TTGCTACATGATGCGTAGTGTTGAGCTCCAGATCGCC 81607 30 100.0 34 .............................. CGCAATCAACACTCTGTCTCCGGCCTGCAACTGC 81543 30 100.0 34 .............................. TCTAGTTAACTATAGCAGATGGCTCTGGCAATAG 81479 30 100.0 38 .............................. CATATCCCAGTGCGGCCATCGCCTCTGCTGCCGAGTTC 81411 30 100.0 34 .............................. TCTGCTTCAGCTTGACCGCCTCTGCCTTGTTTCT 81347 30 100.0 39 .............................. ATGGCTTTTGGGAACAGCACTCTTGAGAGTGTTGAATTC 81278 30 100.0 36 .............................. GAGAATTGCTTAGATTGTAGATTCTGTTATGAATTA 81212 30 100.0 36 .............................. GAAGTTGACGCAGTAGGGATTCCGGTCGGACTCATC 81146 30 100.0 35 .............................. GTTCATTCTTACCTCCCGTCGAAAAACGCGACATA 81081 30 100.0 34 .............................. ATTATTCTCGCTTTATTCATCTTGTGTGCCTCCG 81017 30 100.0 34 .............................. ATCCTTCCCTTTCCTGGAAGGAACCTTCATATCA 80953 30 100.0 35 .............................. GTCTGAATCAACACACATATCAGCAATGCAATCTT 80888 30 86.7 0 ................AG...GG....... | ========== ====== ====== ====== ============================== ======================================= ================== 52 30 99.7 36 GTATTAATAGAAACATTATGGAATGTAAAG # Left flank : AGAGTACGAAGGATTCAGAATATGGTGGTGAAATGAAAGATGTATGTAGTATTGGTATATGACGTAAGCCAGGAAGAAAATGGCGCGAGACGATGGTCAAGAATTTTCAAAATATGTAAAAAATACCTGACACATATTCAAAATTCAGTATTTGAGGGTGAATTATCAAAGGCACAGTTAGCACAACTGCAAAAAGAATTGAATGAATATATAGACAAAGAATTAGATTCAGTAATCATCTTCAAATCCCGACAGGAAAAATGGCTTGATAAAGAATTCTGGGGACGAAATGATGATCTGACAAGTTTTATATTGTAATTGTCTGTCGATGTCCGATAGAACTAAAAACCCCAGGGGTTGACAATGCTTTGATTTATTAGGAAAAAAAGCTTAAAAGCAGATTTTTTCAGTTTTTATACAGGTGTAAAAATTAATAAGGTGACAAGGTAGACAGAAAGTGGTAGAATTATAGCTGTATTACGAGATGATAGAAGATACGG # Right flank : TGATTCTGATAGCCTGATTTTGCAGAAATATGTTATGCTTTTATGGAATTGTGAAAGAATAAGAAATTGTTTGAAATTTGTCTTATAACGGAAAAGGGAGTGAACAATTGGAATTCAAAAAGAAACTACCGATAGGAATAGAAAATTTTTCAAAGTTACGATCAGAAAATTTTTACTATGTAGATAAAACAATGCTTATCAAAGATCTTTTAAATAATTGGGCAGAGGTGAATCTTTTTACACGACCGAGAAGATTTGGAAAGACATTGAATATGAGCATGCTGAAAGCATTTTTTGACATAAGCAGTGATAAGAAATGTTTTGAAAGTACGAAGATTTCCAGAGAAGTTTCTCTTTGTGAAAGATATATGGGAAAATTTCCGGTGATTTTTGTGTCATTGAAAAGTGTTAGCGCAGAAACCTATGAAAAGGCATGTGAAATGGCAGTTCAGATCATAAATGGTGAAGCTCGTAGATTTCAATATTTATTAGAAAGTAGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATAGAAACATTATGGAATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 6850-7047 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUDO01000096.1 Ruminococcus sp. AF41-9 AF41-9.Scaf96, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== =============================== ================== 6850 46 100.0 31 .............................................. TAGAAAAAGAAGCCGTTACTACATTGTTAAA 6927 46 100.0 29 .............................................. GTTATTAATGTTATGGAAAATAAAATTCC 7002 46 100.0 0 .............................................. | ========== ====== ====== ====== ============================================== =============================== ================== 3 46 100.0 30 ACACAGATAGAGGAAAATATAAATGAAACAGTATATTTATGACAAA # Left flank : TATTATAATTATGTGGGGAAAATGGAGTTGGATAGATATGTGTTGGCTAGAAGTGGGGATACAAGACAAGGAAAAGTTGAAAACATCGCATATTTAGTGAGTTTTCCTGCTAAATCAAATTGTTATGATATAAAAAGTCTTTTTTATGATAGAATTCAACGATATTTTGAAGAAAAAATGTTTGAAGGCATTTTTAAAATGGGCGAAGAAATTGATAAGAGACGTTTGATATATGGACCAGATCAAGATAGAAAATGGGCAATTAATGCATATAATTGTTTGCGTTCTTCAATGGATCAACATACTAATTTGAACAAATTTGCTAAAAACTATCATATTGAACTTACAGAAGAATTCGAAGCATTGGAGAATATGTGGGGGCAACTAAGAAAAAAACTTATTGAATATTATAATCATAGATTAGATGATTTAGAAGAAATTTCATATGCGACATTTAAAATAGGACAAATAGAAAAAGAAGCCGTTACTACATTGTTAAA # Right flank : GTTATTAATGTTATGGAAAATAAAATTCCACA # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACACAGATAGAGGAAAATATAAATGAAACAGTATATTTATGACAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.09%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.40,-0.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA //