Array 1 54660-54331 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABFMC010000006.1 Rothia dentocariosa isolate Rothia_dentocariosa_BgEED26, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 54659 37 100.0 35 ..................................... AAGAACGGATGGGGTGCACAGGCGGGCGCGTCTGC 54587 37 97.3 35 G.................................... GTACAGCGTGCCTCTCTCGCCGGGGGTAGTCTCCC 54515 37 100.0 37 ..................................... TATCAATATTCTCAGGTGTTACCTGCCCGCGGTAGGT 54441 37 100.0 37 ..................................... GTGGTTACCCGCCACACTAACAAGCCGTACTATGAGC 54367 37 83.8 0 C............................GC.A.A.A | ========== ====== ====== ====== ===================================== ===================================== ================== 5 37 96.2 36 AGTCTCACCTGTGAGAACAGGTGACTTTCATTGAGGG # Left flank : TACGATGAGGCGTGACGACACGCGACGTACTCTTATCGCCTACGACATTCCGGATGACAAACGCCACGGGCGAATTGCGAAGCTGCTCTTAACCTATGGTGACCGGATACAGTACAGCGTGTTTATCGTTGATGTAATTCCCTCTAAGCTTCTTCGTCTGAAAGATGAAATTAGGCAACAGATAGAGGCCAGCGAAGATTCAGTATTGTTTTGTGATCTTGGTAGGCTCTCAGAACTTGGCGAAAAGCGCTTTAGCTATGTGGGACAGTCACGTGACACCACAGATAATGACGTGCTTATCCTCTAATATATGTATTATGGGCGCGAGCATCTAGTGCTTACCGTAAATCCCGGGTTTCGCTCGCGGTAGTAAATCCGCAGGTCAGAGACATTTTTGTAGTCATATTTGTGGATATTGTAGACTAAAAATCAGTGGTCTACTCCTCGCGCTCGCGTAGTCTCTTGAAAAACCGGTATAACACCGGGGACTTTTGAGGGGC # Right flank : GAGAAGATGCCCCGTCTCATCACCCATGAGACGGGGCATCTTTGCAGTAAAGGTAGATACTAATCGATAGCGTCGAAATCGACCACATCAAACCCGAGAATTCCTTCGGACGCACTCACTACCGGCTTATCGCGCACCACATGCCGGTTTGCAATCCAGTTGCGGAATGACTCTTCATCCTGCCAGTGAGTCATCGCAAAATATTCGGTACCGCCACTGGTGGGGCGCAGCAGTTCAAAGCTCAGGAACCCGGGAACTTCATTGAGCTTTTCGTTGTTGTTCTTGAACCGGCGCTCCAGCTCCTCGCCCATACCTTCCTGCACACTGAGCTTATTAATCTTGACAACTGCCACGCTATTCCTCCGTTGGTTTTATGGCTTATAGTTAGGGATACCTGATGAAGGCTTTAGTTTTAGCATAGGGCACACCGCGCTCTCGACAATAGATGCGCACTATTTATGACGTTATTTTGCCGGTCACACGGTACCGCGAGTGCTGCC # Questionable array : NO Score: 2.87 # Score Detail : 1:0, 2:0, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTCTCACCTGTGAGAACAGGTGACTTTCATTGAGGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.00,-11.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 64728-63593 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABFMC010000006.1 Rothia dentocariosa isolate Rothia_dentocariosa_BgEED26, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 64727 36 100.0 37 .................................... ACTAAGATGCCTTCCATTTGATGGGCGAATGCTTCGC 64654 36 100.0 40 .................................... TTCACGTTCGGAATGAAACACCACGACGACCCGATAAACG 64578 36 97.2 36 .............A...................... ATCTTCAATAAAGACTCGAAGGGGCAAACTCACTAC 64506 36 100.0 40 .................................... GGCGGCACTACAGCTGACGCTATCGAGGCGATTAGCGCCG 64430 36 97.2 39 ......T............................. GTGTTCAATGAGGACGGCTCCTACACCGGTAAATGTGGT 64355 36 97.2 38 ......T............................. TTGGTGCCGTCAGATGCGTATGCTGCGTGCGCGAACAC 64281 36 94.4 36 .............A.G.................... GACTACGTAATGCAATGGCTACAGTATGTAGGCAAC 64209 36 94.4 37 .............A.G.................... TGGCGCTAAACCCGTATTGGTCTGGAAAGACGCAGAC 64136 36 94.4 36 .............A.G.................... GCTGCGCAAATCACACAAACCGCCGGTAAAACGCTG 64064 36 100.0 34 .................................... ACAGGCGCAGGAGAGGGAGCAGGCACAGTCATAG 63994 36 100.0 36 .................................... CGTGTCATCAACTGAAGGGTACCTACTAATAACCGT 63922 36 94.4 36 ........T....A...................... ACGGAATTTGGAACGGACGCGACTAAGGCGACTCTT 63850 36 94.4 37 .............A...A.................. ATAACAGTACTGGCCTCAACCAAAGGGGCGGGCGCTC 63777 36 97.2 38 .............A...................... CATGCAGTGCGTTCACGTTTCGCGCACCACGTCACGTC 63703 36 100.0 39 .................................... ACGTTGAGCATGCGGGTCTTCACGTCATGGCGGGCCCGT 63628 36 77.8 0 ........TG......CAA.............TC.A | ========== ====== ====== ====== ==================================== ======================================== ================== 16 36 96.2 37 GTCTCACCCATGAGAATGGGTGACTTTCATTGAGGG # Left flank : AACATCGCTTGAGAACGCGCTGCTGGAATTCCCCGGATGCGCCGTCGTCGTTTCCCACGACCGTTGGTTCCTCGACCGTGTGGCAACCCACATCCTCGCATGGGAAGGCACCGAAGAAAATCCGGATCAGTGGTACTGGTTCGAGGGTAACTTCGAGTCTTACGAGAAGAACAAGATCGAACGTCTGGGACCGGAAGCTGCGAAGCCGCACCGCGTGGTGCACCGCAAGCTGACTCGCTAAGTTAAGAAAGATAAATGCCCCGCTTGTCCGCTATTTCTGCCGGATGTGCGGGGTATTTTATTTTGGATTGTTTCGAGGAACGCGAGCACCTAGTACTTACCGAAAATCCTGGGTTTCGCTCGCGTGAATGAAACACCTTGTCAGAGTCGTTTTGTGTCTGAGCGATTGCCTCCGATAGACTGAATAATATGAGCGCTTGTCCCTACGCTCGCGAAAGCGCCTGAGAGACCAGGAATTTACTGGATATTTTTTAGGTGTT # Right flank : TACCTAAGATGGTTCCGAGGTGCTCAGAACCCAGGCTTAACACGAGAAATATGTAGGAAGAGAGATATGACGAAACATAAAGCATAGCTTCATAAATACTGATACTATAAAAAGTACACAGAGCTGTTGGTTTACATTTGAAACTCACCTCAAAACCCACTTCTCTCAAAAGCGTTTCGTGCGCTGCGTATAAAGCCTTTCAGACTTTATCGTAAACACAAGCAATATAAGTAGAACAATAGCGTTCTACATTAGGTTAGGAGAATTCCGTGTCAATTTCGGATAAAGCTGATATCAGCTTCGAAGATTTGAAGGAAGCATGTGCCGCTGGTGGTGCCTCAACCTTGGTTTCGGTAACAGAGCTTAAACCTGCTGCCGGAGAACACGCATCAGTTGCTCCAGCTAAATTTGTTGAGGGTTCTAAGTCAGTCTTCGCTTTTGAAACCCGATATATTGATGGTGAAGCTGCCCGGGTAGTGCTCATTGATAGCAAACAATCT # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.58, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACCCATGAGAATGGGTGACTTTCATTGAGGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.60,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //