Array 1 208752-207884 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPVU01000003.1 Pasteurella multocida strain HNA15 Contig003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 208751 28 100.0 32 ............................ ATTAGCTGAAGACCGATTTATTAGAAATACAG 208691 28 100.0 32 ............................ GAAACACTAGAAGATTTAACGGTCATTGAAAA 208631 28 100.0 32 ............................ ATTCGATTTCCAGTGCCGAAAATCCATGCCCT 208571 28 100.0 32 ............................ ATAATGACGTGTTCAACTAACGGCTGACAATC 208511 28 100.0 32 ............................ CACAACATGTGCTGAAAGTGCGTGAGATTTGA 208451 28 100.0 32 ............................ TACCCGATGTTAGAGGCAATCAAAGTGGAGCT 208391 28 100.0 32 ............................ AAAGTCTCATTTAACACCGCGCGACGCTGGAA 208331 28 100.0 32 ............................ AAGCCCACCTTGCGCTTGAACAGATGAATTAA 208271 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 208211 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 208151 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 208091 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 208031 28 96.4 32 .........T.................. GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 207971 28 100.0 32 ............................ AGTTAAAGCTAAGAAACTAACGGATATTGCGA 207911 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 15 28 99.5 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGTCTACCGAGTGCCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAATGTTTCCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : ACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATACCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATACTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAGACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCTAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 105747-107033 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPVU01000005.1 Pasteurella multocida strain HNA15 Contig005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 105747 28 100.0 32 ............................ CGTTTGAGCGTGATCACTTCTCTTGTCCAGTA 105807 28 100.0 32 ............................ AGAATTTTTTGCAGGAATGAATGCAGCAAAAG 105867 28 100.0 32 ............................ TTATCGCGGAAGTCAGTCGCCATAATGGCGTA 105927 28 100.0 32 ............................ ATTTCAGGTGAGCAGTGGATGATTATCCCGAG 105987 28 100.0 32 ............................ ATGTGTCTAAATCGGGGTAGATTTCCGCGAGC 106047 28 100.0 32 ............................ AAAATCTCTGGAATTTGTCGCATATTGCCTTT 106107 28 100.0 32 ............................ GTTGCAAGGTTGTAAGCTGTCCCCGCGTATTC 106167 28 100.0 32 ............................ ATGAACACATGATCACTTCTTGATGGATCAAA 106227 28 100.0 32 ............................ ATCAACGGGAGCGTAAGCGAAATGAAGAAACG 106287 28 100.0 32 ............................ AAGTGTCCGCGCTCACGTTAATCCCCGTAAGC 106347 28 100.0 32 ............................ AAGCCACAGCGCAGATGAGCACGTCATCACGT 106407 28 100.0 32 ............................ GATCCAAGCGTTACAAGTGAATCGTGGCTCTT 106467 28 100.0 32 ............................ AAGCACTATGCCGATAGCTCCCCAAAAGTCAT 106527 28 100.0 32 ............................ TAGCAATGGCAACAGCCTTTTTTATTATAGTT 106587 28 100.0 32 ............................ TCGCCTTTTGTCGCAAACCATTTGCGCACCCG 106647 28 100.0 32 ............................ GCAATTTTGGGTATTCGTTTTGATTCTGAATA 106707 28 100.0 32 ............................ AAAAGCATTCTGTTTACGCGTAAAAGGATCAA 106767 28 96.4 32 ............G............... AGCTTTAAGCTCTGCAAATGCCGAACTCATAC 106827 28 96.4 32 ............G............... GATTATTTTAAGCAACGGAGCGGAATTACACT 106887 28 92.9 32 ............G....T.......... GTCATCTTCCAATTCTTCTGTTTTCTGCTCTT 106947 28 96.4 32 ............G............... TAAAGCGATCTTGGCTCGATTATCAGATTGGT 107007 27 85.7 0 ....................-..TC..T | ========== ====== ====== ====== ============================ ================================ ================== 22 28 98.5 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGTTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAACAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTACGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTCTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATAGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : TTGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTAGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTTTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAAGGCATCGTTTG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //