Array 1 1298671-1304874 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFRU010000001.1 Bifidobacterium choladohabitans strain W8101 NODE_1_length_2055849_cov_323.894533, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =========================================== ================== 1298671 29 96.6 32 ............................T GCAAGGCACATGCCAAGCGTGGTCAACAAAGA 1298732 29 96.6 32 ............................T TTGAGGACGGTTCTGGCGTTCTTCCATGCGTC 1298793 29 100.0 32 ............................. CCTGTGCGTGAGTTATTTACCACTATGTGCCC 1298854 29 100.0 32 ............................. CACCTAATCCTTTCACCACCAACCATACCACA 1298915 29 96.6 32 ............................G GAAAGGACGTGACAAATGGAAAGCATGTGGAT 1298976 29 100.0 32 ............................. CGGATATGTCGGCGCTTGGCTGTCAGGCACCA 1299037 29 96.6 32 ............................G GCTGCTCGGACGGCGTGCCTGTCGTGGCAGAA 1299098 29 100.0 32 ............................. CAGGAGGCGGAAGACAGACACGCAATCACCCG 1299159 29 96.6 32 ............................T CCGCCAGTCGTCTTCTCCCCCTGATACAATCC 1299220 29 100.0 32 ............................. GCGAGCTACCACTATGATGCAGCAGCCATCAG 1299281 29 100.0 32 ............................. CCTCTTTCAAAAAGAGTCATTTCTATGAAACG 1299342 29 96.6 32 ............................G TACTCAACAAGCCAAAGCTCAAGGCCGAGGAG 1299403 29 96.6 32 ............................A CGGTTCATGGTCTCTCCGAAGGCTTACGTGAG 1299464 29 96.6 32 ............................G GAGGAGGCGCGCGACCAGGCTATGGAGACGGG 1299525 29 96.6 32 ............................G CTCATAGGGATCCACTTTGATGCCGACGGCCG 1299586 29 100.0 32 ............................. CATGTCAAAAGCCCGGGAGACCACGTTTTGAG 1299647 29 100.0 32 ............................. TCAACTCATGCCTTTCTCGGAATCTATAAAAT 1299708 29 96.6 32 ............................T CAGTTGAGCAAGAGGCTCAACCAGAAAAGCGA 1299769 29 100.0 32 ............................. AGCCCAGACAGCAGCAAGCGCCACGCCAGCAG 1299830 29 96.6 32 ............................T GTGCAGACGCTGATGAGGATTTTCCCCAATCT 1299891 29 96.6 32 ............................G TTTCGGAAACACCATATCGGGTTTAGGCAAGA 1299952 29 96.6 32 ............................G GGCGGCAGATTGTACCCGGTGGGCCAGTAACC 1300013 29 96.6 32 ............................T TCGTCCGGCGTAATACGGATGGGCACTGGAAA 1300074 29 100.0 32 ............................. CGGCTGATCCAAACCTTAGAGCGTGCGGCAGT 1300135 29 100.0 32 ............................. TGCTAACCCTGCCCCGAGGAGCGCAGGTGACC 1300196 29 96.6 32 ............................T AAGGGGACCGCTGCCGCTAACTACGACTATCT 1300257 29 96.6 32 ............................T GACTACATGAGCACCACAGACTTTGCTTTACA 1300318 29 96.6 32 ............C................ GGCTGGAACGGTAATATCGATCTGAGCGTGGT 1300379 29 100.0 32 ............................. ACATCCAGAATGGTCAATATACGTCTTGTTGT 1300440 29 100.0 32 ............................. TCGACCGTCGACGGCACCGCCTGAGACACCCA 1300501 29 100.0 32 ............................. GCAGATCGCCAGATGGGTCAAGCAGACAACCG 1300562 29 100.0 32 ............................. TCTCCCGTGGCACGGGGGATACGGTCGCGGTC 1300623 29 96.6 32 ............................A TGTTCGCATTCATGCCGGAATTCTGCAATCTC 1300684 29 96.6 32 ............................T GTCAAGATAATTCAAACCATAATCGTCATTCT 1300745 29 100.0 32 ............................. CCTGCGCAAAGCCAAGCTCCCCCAGGTGCGCA 1300806 29 96.6 32 ............................T CCCCGGTCGGCGGCTTGGTTTTTGCGCAGGCC 1300867 29 100.0 32 ............................. GTGTCTGCGGCTCGGGTGGTGCTGTTCGATGG 1300928 29 96.6 32 ..............T.............. AGACGCTCAAAGACTCACGCCACACCAACAGC 1300989 29 100.0 32 ............................. CTCTACGCTCAGGTCACCCGGTATCCCGGTGG 1301050 29 100.0 32 ............................. TTCTAACCCGTTGCCCCGGCCATCCGGTCGGG 1301111 29 96.6 32 ............................T CATGGGCTTGCTCTGCTCACGCCGGCCCAGCA 1301172 29 96.6 32 ............................G GACCAGGACGCTTACCCGGTCCTCGCGACCAT 1301233 29 96.6 32 ............................T GTCACGACCACTGGTGCTGACGTGGTGGTAGC 1301294 29 100.0 32 ............................. GTTTTGTCATCTCTCGCGGGTCGAGTACAGTG 1301355 29 96.6 32 ............................T TTTGCGCCGTCGTTTCCGGCTTCGGTCTGCGC 1301416 29 96.6 32 ............................T CGGCGGAAGGACGCGGATATCTCGGCTTGTTC 1301477 29 96.6 32 ............................G CCCACCAGGCCGTCGGGCGTGGAAAACAGGCC 1301538 29 82.8 33 ...........GGAT.............A CGGGCTCAACACCACCCACGCGCGGACCCGTGA 1301600 29 96.6 32 ............................T CAGACGGGGCCATCCTTTGTTTATCAGTATGC 1301661 29 96.6 32 ............................G GAAAAGTGGATGGACGATATCCTATTTGAATT 1301722 29 96.6 32 ............................G TGTTCCCCGACAATCTAAGATTCCTGAGCAAT 1301783 29 100.0 32 ............................. ATAGCCTTTAGGCGGGCCAGCCGTCTGGCCGA 1301844 29 93.1 32 .................A..........T CTCATCATCGCTCTTGTTCTGCCACTGGGCAA 1301905 29 100.0 32 ............................. GGATCAAACGAGATGGGCCTGAACACGTCCTC 1301966 29 100.0 32 ............................. CTCTGATACATCCTGACGCGCGTTGTCTGCTG 1302027 29 96.6 32 ............................T CCGTGGCGCAAAGACCGACAGACCGGCGATAC 1302088 29 100.0 32 ............................. GGCATGGAAGCCCTCCTGCCTGGCCGAGGGGA 1302149 29 96.6 32 ..............T.............. GTCTGTGAGAAACGATGGATGATCCGTCCCCA 1302210 29 100.0 32 ............................. CCATCCCGCAGAATGCCTACGATCATTATCAA 1302271 29 100.0 32 ............................. TGCACCATCTTCAACCCCATCCAGTCCTTGCA 1302332 29 100.0 32 ............................. ACGCTCATGGCCTCCGTGTTGGCGGACAGGGG 1302393 29 96.6 32 .....................C....... AGCCGCCGCCAGCAGGGCCAAAGCCTGCAGAT 1302454 29 100.0 32 ............................. GGGATGTACTCAAGCATTTTAAGGGACGAATT 1302515 29 96.6 32 ............................T GATCTTCAAGACGTTCTGAAGTCTGCAAGACG 1302576 29 100.0 32 ............................. ATCATCTTGGTGCCGAGGCCGGTCTGATCCAT 1302637 29 100.0 32 ............................. GGAACAACACGATGCACGCCTGGGCCAGCGCT 1302698 29 96.6 32 ............................G TCACTCTTGAGCAGATCGGACCGCTGTGCATC 1302759 29 96.6 32 ............................T GACCTCGCACCACTCGGTGTCACCAGTGTGCT 1302820 29 100.0 32 ............................. CACTATGGAAAGGATGAAGATGATGAATAGTG 1302881 29 96.6 32 ............................T CACCCTGACGAGGACAGCCTGCCGGAGCCTTA 1302942 29 100.0 32 ............................. TACTGGGTCCATTTGACCAAGTGGTACCCAAC 1303003 29 100.0 32 ............................. CCGGTGACGAGCTGGCATCGGTCATGAGAGTG 1303064 29 100.0 32 ............................. AATTGGCACGGGCCACATGTAGACCCGATATT 1303125 29 96.6 32 ............................T CAGTGGCCGACTGCCGGCTTTGCGGTCCATGG 1303186 29 96.6 32 ............................G TCATCCGGGACTTATCCGACATCAGGGTGGCC 1303247 29 96.6 32 ............................T GCCTCTCCCAATGGGCTTTTGCATATGCGTCG 1303308 29 96.6 32 ............................T CTGCCGGATGGTGGGTCCAGAAAGTCGTTGGT 1303369 29 100.0 32 ............................. CGTGTTGAGCTGCTTGTCGTCGCCCACCAGGA 1303430 29 100.0 33 ............................. GGGCCTCTTGGCAGGTCCTCGCAGATCGGGCAG 1303492 29 100.0 32 ............................. CGTTGCATGATTTCCTGCGTCGAGGAGCAATG 1303553 29 96.6 33 ............................T CCCAGTCACCGTTCTTCAGGGCGATGGTGTACA 1303615 29 96.6 32 ............................A TCGTCTCTGGGCATGTCTTCATACCACTGTTT 1303676 29 93.1 32 ...T........................A CGCACGGTCCGCCTTGTTCGAAGCAGCGTCGG 1303737 29 96.6 32 ............................G GCTCCAGGGCGATATCACCGGACTTGGTGCCA 1303798 29 100.0 32 ............................. GAGTACCTGCACGCCCTGCAGGACCTGGGCAT 1303859 29 100.0 32 ............................. GGGGTAGATCGCAAGTATGTAGACCGGCTGAA 1303920 29 96.6 32 ............................T GGACGGCTGCACTTTTCAGCTTTGCCTGCTCG 1303981 29 100.0 32 ............................. AACGAGACATTCGGCCCATACCCCATCACCAC 1304042 29 96.6 32 ............................T GGTGCGGACTGGCCCGGCATCCCATTCGTCTC 1304103 29 100.0 32 ............................. CCGACAATACGATCGTACGATGAACAGACTTT 1304164 29 100.0 32 ............................. CGGCAGATGGAGAAGCTGAAACTCGGGTCTTC 1304225 29 96.6 32 ..................A.......... TGGGCCAGCGCCCACTCCAGGGTCATGCCCGA 1304286 29 96.6 32 ............................T TGTCGGGCGATGAAACCAGTCGGGTGAAAGTC 1304347 29 93.1 32 .................T..........T ATGGGAGGCTTTCACCTCTTTTCTCAGCTCAT 1304408 29 100.0 31 ............................. TGCTCCTGTCCGCCGCCGGCCATCTGGTCCG T [1304433] 1304469 29 100.0 32 ............................. CTGTACAATGCCGAAATCGAAGTCATCGTATG 1304530 29 96.6 32 ............................T GACTCGAAGGCTGCCAAGGCCGGAGCCGACCA 1304591 29 96.6 32 ............................T TTTGCAATCTGTGATGGTTTGCGGGTCTCAGG 1304652 29 96.6 32 ............................T GAACCAGCTTTCGTTTGCCGCCACCCGATACA 1304713 29 96.6 32 ............................G CTCTGGGTGGAGGGGTCGAACGGCATGGCCTG 1304774 29 100.0 43 ............................. AAGCAGTGGACCGTGGCTTCTTAAGAGTATACAAATACTATCG 1304846 29 86.2 0 ...T....T.........A.......T.. | ========== ====== ====== ====== ============================= =========================================== ================== 102 29 97.8 32 GTGCTCCCCGCATCCGCGGGGATGATCCC # Left flank : TGGCCACGTCACCGCTAGGGTCCGGGACCGGCTTTGGGAACGTATCACAGGGCAGATCCGAACGGGAAAGGCCATCATGGTCTATTCTGCCCGCAATGAGCAGCATCTGAGTTTCAAGGTGCATCGCTCAGATTGGAACCCAGTCGACTGTGAAGGATTGACTCTTATGGAGAGGCCTGCTGAAGGCGGCGATGGCAGATCTGCGGGTGGTGGAAACCGATACCGCCGAACTGGTTGGAGCAATGCAAGCAAGTACAGACGAGTGGCAAAGTTCCGGCGCTCGCGATCCAACTGAGTCCAAGCGGGACTCACTTTTCAGATGAGTTTTGCCGATGAGTGCCAGGTACTGATTACTGGGCCAGTGCATTGATAAGGATCTCTGTGTAGATGGTCTGAATCGCAGTGGCTGGGACGGGGAATGGAAGGGGCTCGAAATGCAAACTCATTAAAAATCAGAGATTTAGTCTATTATATTGTTGGGATTGCAAGGATTTCTAAGT # Right flank : CACAGGCTATCGGATGGATGCCCTGCAGGTTCACAAATATGAGAGGAGACGAATGACTATGGATGAGGATTTCATGAGAAAAATGGCATCCAAGGATAAGGCCTGCACCACTACTCATGACCATATTCCTGATGACCGGATCAACAGTCACGCGTCATGCTATCCCATCACTGATGATATGGATGAAACCGAACGCCGGGTCTGGGATTTGCTGGATGACGAGGACAGGAAAATGATTCAGTCGGATCGTACATACTATGGGACAAACTATGGTGCTGGCTTCGGCGGCAATAGCAAGGTGAGTTTCTACGATGTGCTCGGCATCAGGCAGTTCGACTGATTCATCCCGGGCTTCCACATGTTGCTGCAATCATCAAAAGAATCACTATAGGAGCGCCGGGAAGAATCCATGACCGCTTCATAGTTCGAACATGAGTGTTTGATTCTCTTTAAGTCCCAGTAATCGCATTGGTGTGCCCTGATTGAAGGTTCTGTCTGCC # Questionable array : NO Score: 5.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.60, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCATCCGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCATGCGCGGGGATGATCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //