Array 1 66053-66921 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXBY01000016.1 Pseudomonas aeruginosa strain JYH7 IPC1218_16.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 66053 28 100.0 33 ............................ TACTTGCTGAATACCGCGCCGATCCGACTGAGT 66114 28 100.0 32 ............................ TATCAGTGATGAGCAGTTGGCGGAGGTTGAGG 66174 28 100.0 32 ............................ TACATGATGCGACCCGAATTTCGCATTCGAAA 66234 28 100.0 32 ............................ CGCTGCCATCCGGCGCATTTCCCTCTCATAGC 66294 28 100.0 32 ............................ AACATCCAGCCCGAGCTGAGCGATATCCCCCG 66354 28 100.0 32 ............................ TGCTCGCTGATGACCAGCCGCAGCGCATGGTT 66414 28 96.4 32 .......................G.... CGCAAAGCCCCGCAGGACAATGACTTGATATC 66474 28 100.0 32 ............................ AATCCGAGGCGGAGTTCAGCCACTTGGCATAG 66534 28 96.4 32 .....................C...... GCAGTGATCGAGCGCGCACGGTCGCGCAAGAC 66594 28 100.0 32 ............................ AACCAGCGTGTCGATGCCGAAGCGAAGGCCCG 66654 28 100.0 32 ............................ AGTGAGCACGATCATCATGTCGGCCTGCTGGC 66714 28 100.0 32 ............................ ATCACCGGAGGCCACGGATTCGCTGTAGCTCA 66774 28 100.0 32 ............................ ACCAGCTGCTGCGAGTGCTGGTTCGCGCTGGC 66834 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 66894 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 15 28 97.6 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGAACTTCGTTGCGGACATGCCGATGAGGTGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 77814-75446 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXBY01000016.1 Pseudomonas aeruginosa strain JYH7 IPC1218_16.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 77813 28 100.0 32 ............................ ATAGACCTGAAAGAGGCCGCCCAAGTCCTGAT 77753 28 100.0 32 ............................ TCGGTCGGGCTGCGCCTAACGTAACGTCTGCA 77693 28 100.0 32 ............................ AGTCGATGAACATGAAAATCCCTGTCAATATC 77633 28 100.0 32 ............................ TGGGGCGAAACCCCTAGGCGCCGGGCTAGCTC 77573 28 100.0 32 ............................ TCCTCAAGTTTTGTCAGCCGAGCCAGCATTTC 77513 28 100.0 32 ............................ TGATTGCTGCGGCACCTGAACTGCTCTCCATT 77453 28 100.0 32 ............................ TACCCCTCATTAGCCCGGCAAGTCCGGGCATT 77393 28 100.0 32 ............................ TACCCCTCATTAGCCCGGCAAGTCCGGGCATT 77333 28 100.0 32 ............................ ACTCTGCGCCTCGACGTCGGGATCTACGAAAA 77273 28 100.0 32 ............................ ACCCGAATGCATCACCAACCCACGGCGTGCCC 77213 28 100.0 32 ............................ CTCCAGAGCGGGTCCGACAATAGTCAAAACCC 77153 28 100.0 32 ............................ AGGACTCAGCGAGCCTTCACAAGACGCCTCCA 77093 28 100.0 32 ............................ ATCGAGCAGTGCATCGCCGTCTACAACCAGCT 77033 28 100.0 32 ............................ TGATCGACATCAGGAACGCCCACAGAGGCCGC 76973 28 100.0 32 ............................ ATCACGCCCCAGCCACTTTTCAACCCCGCACT 76913 28 100.0 32 ............................ GGTGTGTGCGGCCAGCTCGGACCCGAACTTGA 76853 28 100.0 32 ............................ AGTCACAGCCGCCGCAGCAGCCAGACCGCCCG 76793 28 100.0 32 ............................ TTAGCGAGTCACCGGGACAAAGGTGACCACGG 76733 28 100.0 32 ............................ TGTCCGAACTCCCATCTGTTGCCCTGATCAAC 76673 28 100.0 32 ............................ AGAAACTGCGGAACCGGAAGTGCATTGATCAA 76613 28 100.0 32 ............................ AAGTTCGTGACTGAGCACCGGCACCTGGGCAT 76553 28 100.0 32 ............................ ATCACGTGTGATTTTCGATGAACGTGATTTTT 76493 28 100.0 32 ............................ GGAACGAAGCGGGTGCGACACGTCGCAACTGC 76433 28 100.0 32 ............................ AGACCATCACACCGGTGACGCTGCACATCGTC 76373 28 100.0 32 ............................ GCATAAAAGTGCCAACGTCGACTTTGTAGCGT 76313 28 100.0 32 ............................ AGGAGGTTCTGGTCCGTCGCCCAGTTCCCGGT 76253 28 100.0 32 ............................ TCGCCCGTCACGGAGCCCGCCGCCTTGGTCAC 76193 28 100.0 32 ............................ AGAATGGACTGCCGAGCGCCGGCCGCCAGTTG 76133 28 100.0 32 ............................ CGGCATTGCTGAATGCCATAGCGGATCTGCTC 76073 28 100.0 32 ............................ GGCATCCCCGAGCGCAAGCTTCCATCCCCGCC 76013 28 100.0 32 ............................ AGCGGCCTGGACCTGGTTCGGCCCGTCCAGGC 75953 28 100.0 32 ............................ CAGAAGCGCCGGCCGTTGGCGAAGAACCAGTA 75893 28 100.0 32 ............................ GATACCTGACGGCCTGGTGCTGGATCACCTGT 75833 28 100.0 32 ............................ TGTCCTTTCAACTCGGTCTGCTCGTAGAGGTT 75773 28 100.0 32 ............................ TTGAGAAGCCGCGGGTGTCTAAGAAACTGGTA 75713 28 100.0 32 ............................ AAGACGTGGCAGGCGGCCTACAACCACGACGA 75653 28 100.0 32 ............................ TGACTGCGGGGCTGCACGACATAGTCGTCGAC 75593 28 100.0 32 ............................ GTATGAAGTGTGTTACCGCGTGGGCGATTCCT 75533 28 100.0 32 ............................ TCGTAGTGGCCCCACGTCGGCGGTAGCTCGCC 75473 28 96.4 0 ...........A................ | ========== ====== ====== ====== ============================ ================================ ================== 40 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCACCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //