Array 1 133860-132602 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSWF01000014.1 Parabacteroides gordonii strain OM02-37 OM02-37.Scaf14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 133859 29 100.0 35 ............................. ATGGTTTTAAGTGAGTTTCTTGTAGACGCTATAAA 133795 29 100.0 35 ............................. TACTTTCCATCGTGATAGATGTTGTCCATTTCTTG 133731 29 100.0 37 ............................. CTTTTATAGCGTCTACAAGAAACTCACTTAAAACCAT 133665 29 100.0 35 ............................. CTAACACGAAATCAAATGAATAATATCTTTCTAGG 133601 29 100.0 36 ............................. ATGTTTTGGATTGAAATAGCAGCACTGAGCGTAACT 133536 29 100.0 34 ............................. AAGCTATTTTGACTTTCAACGTATGATTTAATCT 133473 29 100.0 37 ............................. CCGGCATGCAAGGCGATTAGAGAAATACGGTGTACAC 133407 29 100.0 35 ............................. CTATTGATCTTTCAAATGATATATAGTCCCGCATT 133343 29 100.0 39 ............................. TTACTCTCTGTGATCTTAATTAATTCTTCCATGATAATT 133275 29 100.0 36 ............................. CCAAGTTCGCTCAACTTTTTCCCCGCAAGGGTCAGT 133210 29 100.0 36 ............................. GAACAAAAGGAGTATAGGAGACTGTTATCTCCTGAG 133145 29 100.0 36 ............................. GCTATCAATCTCTGATTGAATTTCTGCCTTTCTTGT 133080 29 100.0 35 ............................. TGCGAGTGCAGCCTCTATACCTGTCGTCGGATGGG 133016 29 100.0 37 ............................. CCTTGAATCTGCCCGCAATAGCAGGAAGTAATACAAG 132950 29 100.0 34 ............................. CTCATAAGGCATATCAGATGTAGGTCCTTTAGGA 132887 29 100.0 34 ............................. ATAGACCAGGTTACTTTACCGGCTTCATTGTCTC 132824 29 100.0 36 ............................. TGTGTTTTTATCTGTTATGCGAGGAGCTCCAGGGGT 132759 29 100.0 34 ............................. TTACCTGGATTATCTTTTCTCGTATCATAATCAA 132696 29 100.0 37 ............................. ATGTATCGCGGGAAACGATGGATCCCGTAAAAGCCTT 132630 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================= ================== 20 29 100.0 36 GTATTAATTGAACTTAGTAGAATAGAAAT # Left flank : CTTTTAAAATGTATTGGTAATGTATGTGATCTTAGTTTATGATTGTGGAGAAAAACGGGTCGCGAAGATGTTAAAACTTTGTCGGCGTTATTTGAACTGGATCCAGAATTCTGTCTTTGAAGGTGAGATATCCGAAGTTCGTCTAAAGGAGTTGATAATGCAGGCAGAAACCTTTATGGATAAGACCTGCGATAGTATCATTATTTTTAAGAATGCTTCAAAAGTGACAATGGATAAGCAGATTGTAGGTAAAGAATGCAGCTCTATTGATATATTCCTGTAACAATAGATATTTGTCGATCCTGTAATTTTTGAAATATACAGTGGTTGAAAATATGAAATAAGCTCTTTGACTTGTTGATTTATAGCTGTTTATGTGATATGTCGATCTCCAGTGTTTTTTATATTATTGGAGGTCGACATATTTTATCAGGAAAAATGGTTGTTTTTAAATTTTGAACTTATTGATATTTATAAGTTTATGTTTTTGGGACGATAAG # Right flank : AATTTTGAGCGTTTCGGTTCATCCGAGTACACTATGTATTAATTGAACTAACAAGTCTCAACTAATATAATATAGAATGAATTAAAATATGGGGTTTACAGCCTTAATTGTATCCCTCCCCAATTTTTTGTATCTTTGCCCCTCAAAGTAAAGTACAAAAGGCAATATGATCAGTTATTTACAGATAGACGGACTGACCAAGAGCTTCGGCGATTTGGTTCTTTTTGAGGATATTACATTTGGGATTGCACAAGGCCAGAAGGTGGGGCTTATCGCAAAGAACGGTACAGGTAAAACAACTTTACTGAATATCATTGCCGGGAAGGAGGATTATGATAGCGGGGCGGTTGTGTTCCGTAACGACCTGCGTGTCGGTTATCTGGAGCAGACACCGGTTTATCCCGAAGGACTGACTGTTCTTCAGGCCTGTTTCTATTCCCCGAATGAGACGGTTCGACTGATCGCTGAGTATGAAGAAGCGATGGCCAGTGACGATCATT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATTGAACTTAGTAGAATAGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [65.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 207131-206774 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSWF01000011.1 Parabacteroides gordonii strain OM02-37 OM02-37.Scaf11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ========================================= ================== 207130 27 100.0 37 ........................... TAATAATTCCGGATCGGCAAGTGCTATCGCCTGAGGG 207066 27 100.0 39 ........................... CACAGGTTATCTTCGACACTCTGCATGTATTTTTGTGGT 207000 27 100.0 38 ........................... ATGGTTACTATCATGCAACGTCTGCATGATGATGAGGG 206935 27 100.0 41 ........................... TCGATTGTAGCGACAAACGTTTCAGCCAATTTATTTGTGGT 206867 27 92.6 40 .............T.......A..... CAGATCGGACAGTAATTAGGTTGCAGAAGTTTCCAAAGGT 206800 27 81.5 0 .....................AA.TCT | ========== ====== ====== ====== =========================== ========================================= ================== 6 27 95.7 39 TTAATTGTACCTTAGTGGTATTTAAAG # Left flank : GTTCCAGGGATGAGGACAAGGCTTAATTGTACCAAGTGAAGATATATAGTTTTTCATTATCTTTGTTTTAACGTAGTAATTAATAGGTAAACAACAATGAACGAACAACAGCAAAATCGTGTAACTTATATCATCTATTGTATCAATGCTTTTGCAGAGCGTTACAAGTTGAGTGCAAAGCAAGCTTTTGCCTATCTGCAACGTTTCAAAGGACTTGTTTTTTTGGATGAATGCTACGAGGCCGAACATCAACTTTCGCTAAGCGATGCTGTTGACGACCTATCTGTTATCTGTAAACGAAATGGAGGAGGATTGGGATGATAACACTTTATCACGGATCGAATGTTGTGATCGAATCTGTTTGCCATTAAAGAATTGTCGATCCCCAGGGTATTTCATACAATTGCAGGTCGACAACTTCAATTAGTAAAAACGAAAGACCAAACAAGGCTAGAAGATATTTAGAGCAGGGAATCTCTATAAATTTGATAGGGGGTTAA # Right flank : TTTTCAAACTTTTTCTAACAGCGAAACTATCTGTTAATCAAAGACAATTCTCTCTTCAAAGGGAGGAGCCATCCTTTATATCAACAAAAAAAGCAATAAATTCATAGGCCAGACCAAATATATGACTATATTTGGGAGAAACTTAGTATACTATTAACTTACTTAGATTATATCTATACCTTATATAATATATAACCTAAATATAATACCAGAATTACTATATGAGAATACATTTATCAACGAGCGCCAACAACGAACTCGTACCTTTCAATTACCAGCAGAAACTTCTTGGTGTATTGCATCGCTGGCTCGGAACAAACGAACTACATGATAAAATATCCTTATACTCCTTCTCATGGTTAAAGGGAGGAAAAAGATACAAAAATGGACTTCATTTTCCTTATGGAGCCAATTGGTTTATCTCTTTTTGTGAGGAGAATTATGTCAAGACCATAATAAATGCAATCATGGACTCACCAGATATGTTTTGCGGAATGAAA # Questionable array : NO Score: 3.05 # Score Detail : 1:0, 2:0, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTAATTGTACCTTAGTGGTATTTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:74.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.70,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 208203-207582 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSWF01000011.1 Parabacteroides gordonii strain OM02-37 OM02-37.Scaf11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 208202 30 100.0 35 .............................. TACGATGCAAAGTCTTCCCCTTTTCCTTCTGTATA 208137 30 100.0 35 .............................. GGTGTAACTGTTCCTTTGTTTTTAACAGCATAATA 208072 30 100.0 36 .............................. CACATACCAGCTGCGCCCCCCAAAGGGCCAACTTGT 208006 30 100.0 36 .............................. ATTCCGAGCAAGGCAGCTCTGATATGTCGCCTGTAA 207940 30 100.0 36 .............................. GGACTTTATCCTTTCCTTTATATACGCTGTTTTCTG 207874 30 100.0 36 .............................. GGGAAGATTGTACAGCCAGCAACTTGGAAATAGGTA 207808 30 100.0 35 .............................. TAAATAGCGGCAGACCCAGGGGCACGGCCAATCGC 207743 30 100.0 36 .............................. TCGATCCTACAAAGCCGATAACTTCCCCCTTTCTCA 207677 29 86.7 37 ..A.....................G-...C ATACTTAAAAACCGGAAGGTTCCAGGGATGAGGACAA 207611 29 76.7 0 ..C...........A-....AA..A..T.. | G [207590] ========== ====== ====== ====== ============================== ===================================== ================== 10 30 96.3 36 GGTTTAATTGTACCTTAGTGGTATTTAAAG # Left flank : CCGGTAGGCTTGGGATATCCCAAACCTTCCATCCTTCTCCATCTTGTCAATAACCCCCAGCGCATAAATCACAAACCCATTACGCGCCACCCCTTTCCTGATACGATTAATTTCTTCCATACTCATTTCTTGTTTAAATTGATATTGGCATGGAATATAACAGAAAAAACGGGGGGATAGGTTCGGAAGATACCACTAAGGAACAATTTACTATGCAAATATAAAAAGCACCGGGACAAATTGGAGAATAAAACTTACAGGATATATTAATATAATGTATATTTGGAAGCTTTATTCTGTTTTAGTCGACTATAATGCAGAATAGCTGTCATCAACACAGTAGAAACATGTGATTTGGAGAGTATAAGAGGTAGATGATAGTTGTCGATCCCCAAGGTATTTCATACAATTGAAGGTCGACAACTATCATTGACAGAAAAGAAGGAACAAACAAGGCTAGGAGGTATTTAGAACAGGGGAAATCTATGGTTTCTATAAGG # Right flank : TTTTTCATTATCTTTGTTTTAACGTAGTAATTAATAGGTAAACAACAATGAACGAACAACAGCAAAATCGTGTAACTTATATCATCTATTGTATCAATGCTTTTGCAGAGCGTTACAAGTTGAGTGCAAAGCAAGCTTTTGCCTATCTGCAACGTTTCAAAGGACTTGTTTTTTTGGATGAATGCTACGAGGCCGAACATCAACTTTCGCTAAGCGATGCTGTTGACGACCTATCTGTTATCTGTAAACGAAATGGAGGAGGATTGGGATGATAACACTTTATCACGGATCGAATGTTGTGATCGAATCTGTTTGCCATTAAAGAATTGTCGATCCCCAGGGTATTTCATACAATTGCAGGTCGACAACTTCAATTAGTAAAAACGAAAGACCAAACAAGGCTAGAAGATATTTAGAGCAGGGAATCTCTATAAATTTGATAGGGGGTTAATTAATTGTACCTTAGTGGTATTTAAAGTAATAATTCCGGATCGGCAAGT # Questionable array : NO Score: 3.07 # Score Detail : 1:0, 2:0, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTTAATTGTACCTTAGTGGTATTTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.70,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //